BAC Information

Click to search

BAC

Clone NameB6Ng01-201G20
Chromosome7 (Build37)15 (Build37)
Map Location 7,067,455 - 7,068,57892,520,889 - 92,520,994
singlet/doubletsingletsinglet
Overlap gene5730403M16Rik
Upstream geneZfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822
Downstream gene2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201G20.bB6Ng01-201G20.g
ACCGA022203GA022204
length1,1181,031
definitionB6Ng01-201G20.b B6Ng01-201G20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,067,455 - 7,068,578)(92,520,889 - 92,520,994)
sequence
gaattcatgtctcattattaaaccactccgttcccccgtcatccaaactc
agcagcatggaaactgcactctgtgaagtcaagaacacagagctcagtct
cccggagctccctggtgtcaactcctgggtaacagaaagatgacagcagt
cctcatcatgttccagtatacctactagagcaggaagcttcagtagctgt
gtctcacaaaggccactctcagaacttctccttaaggtcaggttcaaccc
tagggctgaaggtttgccagcggctgaagctgctctctacaaactctgca
cccagagacctatgcagggtgtgcgtgttgttttcagaaaacacttatgg
tccgatcagagcctatcccaggatccaagggatgcatcctagtccagtga
ccgctctgcttttatgggctagaggtgtggctggatgatgcccacgcttg
ctttgaagcgttagacacttcttttttcctcctgctgagatttcaggtgt
tcatggagatgaataagggacctcttcccctcatggctctcctatgggtt
tatcgagcgtgaatcttccggtgtttgtacaggctagagctactgcagta
caccttgtcacactccctgcacgcatactgctttgctacaacgtgcactt
tcatgtgtctaatgaagttgtagctggaattgaagactcgtccacactcg
ttgcacttgaaaggcttgccgtgaactgttagatgttcaatgagctcgga
gttctgggtgaaatacatgccacattcaccgcagctgaaaggcttctccg
cggtatgactgtagaaatgattcagaaggccctctctgctcctgtacgat
ttgccacattcactacactcaaagggcatttcaccagtatgaaatcgata
atggaccttaaggccttctttgctcctgtacgatttcccacattcagtgc
acttaaaggcatctcctcctggtgtggagtccctgatgagaaataggaga
tattatgcttgaaggcttgcacactccactgcacctatagtttcttctcg
ggtggtgcatctgaaatgcctaatgagaacgctttttggctgagacttgc
cacactcggtgcactgaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcaggaaaatgcaaatcaaaacaaccctgaga
ttccacctcacacctatcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccctatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
agcaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctagtatacccaagatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagatgtggga
acaaaacactcttgaaaggagttacagcgacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcacacactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccc
tataggtgacacatatgaactaaccagtacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7067455_7068578
seq2: B6Ng01-201G20.b_44_1161

seq1  GAATTCATGTCTCATTATTAAACCACTCCGTTCCCCCGTCATCCAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCTCATTATTAAACCACTCCGTTCCCCCGTCATCCAAACTC  50

seq1  AGCAGCATGGAAACTGCACTCTGTGAAGTCAAGAACACAGAGCTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGGAAACTGCACTCTGTGAAGTCAAGAACACAGAGCTCAGTCT  100

seq1  CCCGGAGCTCCCTGGTGTCAACTCCTGGGTAACAGAAAGATGACAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAGCTCCCTGGTGTCAACTCCTGGGTAACAGAAAGATGACAGCAGT  150

seq1  CCTCATCATGTTCCAGTATACCTACTAGAGCAGGAAGCTTCAGTAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCATGTTCCAGTATACCTACTAGAGCAGGAAGCTTCAGTAGCTGT  200

seq1  GTCTCACAAAGGCCACTCTCAGAACTTCTCCTTAAGGTCAGGTTCAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAAAGGCCACTCTCAGAACTTCTCCTTAAGGTCAGGTTCAACCC  250

seq1  TAGGGCTGAAGGTTTGCCAGCGGCTGAAGCTGCTCTCTACAAACTCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGAAGGTTTGCCAGCGGCTGAAGCTGCTCTCTACAAACTCTGCA  300

seq1  CCCAGAGACCTATGCAGGGTGTGCGTGTTGTTTTCAGAAAACACTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACCTATGCAGGGTGTGCGTGTTGTTTTCAGAAAACACTTATGG  350

seq1  TCCGATCAGAGCCTATCCCAGGATCCAAGGGATGCATCCTAGTCCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCAGAGCCTATCCCAGGATCCAAGGGATGCATCCTAGTCCAGTGA  400

seq1  CCGCTCTGCTTTTATGGGCTAGAGGTGTGGCTGGATGATGCCCACGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCTGCTTTTATGGGCTAGAGGTGTGGCTGGATGATGCCCACGCTTG  450

seq1  CTTTGAAGCGTTAGACACTTCTTTTTTCCTCCTGCTGAGATTTCAGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCGTTAGACACTTCTTTTTTCCTCCTGCTGAGATTTCAGGTGT  500

seq1  TCATGGAGATGAATAAGGGACCTCTTCCCCTCATGGCTCTCCTATGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGATGAATAAGGGACCTCTTCCCCTCATGGCTCTCCTATGGGTT  550

seq1  TATCGAGCGTGAATCTTCCGGTGTTTGTACAGGCTAGAGCTACTGCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGCGTGAATCTTCCGGTGTTTGTACAGGCTAGAGCTACTGCAGTA  600

seq1  CACCTTGTCACACTCCCTGCACGCATACTGCTTTGCTACAACGTGCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTCACACTCCCTGCACGCATACTGCTTTGCTACAACGTGCACTT  650

seq1  TCATGTGTCTAATGAAGTTGTAGCTGGAATTGAAGACTCGTCCACACTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTCTAATGAAGTTGTAGCTGGAATTGAAGACTCGTCCACACTCG  700

seq1  TTGCACTTGAAAGGCTTGCCGTGAACTGTTAGATGTTCAATGAGCTCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTGAAAGGCTTGCCGTGAACTGTTAGATGTTCAATGAGCTCGGA  750

seq1  GTTCTGGGTGAAATACATGCCACATTCACCGCAGCTGAAAGGCTTCTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGTGAAATACATGCCACATTCACCGCAGCTGAAAGGCTTCTCCG  800

seq1  CGGTATGACTGTAGAAATGATTCAGAAGGCCCTCTCTGCTCCTGTACGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATGACTGTAGAAATGATTCAGAAGGCCCTCTCTGCTCCTGTACGAT  850

seq1  TTGCCACATTCACTACACTCAAAGGGCATTTCACCAGTATGAAATCGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACATTCACTACACTCAAAGGGCATTTCACCAGTATGAAATCGATA  900

seq1  ATGGACCTTAAGGCCTTCTTTGCTCCTGTACGATTTCCCACATTCAGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTTAAGGCCTTCTTTGCTCCTGTACGATTTCCCACATTCAGTGC  950

seq1  ACTTAAAAGGCATCT-CTCCT-GTGTGGAGTCCCTGATGAGAAATAAGGG  998
      |||| |||||||||| ||||| ||||||||||||||||||||||||  ||
seq2  ACTT-AAAGGCATCTCCTCCTGGTGTGGAGTCCCTGATGAGAAATA--GG  997

seq1  AGATATTATGCTTGAAGGCTTTGCCACACT-CACTGCACCTATAAGGTTT  1047
      |||||||||||||||||||||   |||||| |||||||||||||  ||||
seq2  AGATATTATGCTTGAAGGCTT--GCACACTCCACTGCACCTATA--GTTT  1043

seq1  C-TCTCCGGT-GTGCATTCTGAAATGCTTAATGAGAAAGGCTTTTTGGCT  1095
      | |||| ||| ||||| |||||||||| ||||||| || |||||||||||
seq2  CTTCTCGGGTGGTGCA-TCTGAAATGCCTAATGAG-AACGCTTTTTGGCT  1091

seq1  GAAGGACTTGCCACACTCGGTGCACTGAA  1124
      ||  |||||||||||||||||||||||||
seq2  GA--GACTTGCCACACTCGGTGCACTGAA  1118

seq1: chr15_92520889_92520994
seq2: B6Ng01-201G20.g_995_1096

seq1  TGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGCACCCAAGG  50
      |||||||| |||||||| ||||||||||||||||||||||| ||||||||
seq2  TGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG  50

seq1  AGCTGAAGGGGTCTGCAACCCTATAGGAGGAACAACAATATGAACTAACC  100
      |||| ||||| |||||||||||||||| |  ||    |||||||||||||
seq2  AGCTAAAGGGATCTGCAACCCTATAGGTGACAC----ATATGAACTAACC  96

seq1  AGTACC  106
      ||||||
seq2  AGTACC  102