BAC Information

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BAC

Clone NameB6Ng01-201N02
Chromosome7 (Build37)
Map Location 78,100,598 - 78,258,686
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201N02.bB6Ng01-201N02.g
ACCGA022483GA022484
length1,129701
definitionB6Ng01-201N02.b B6Ng01-201N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,100,598 - 78,101,721)(78,257,996 - 78,258,686)
sequence
gaattcataacgaaaatctcaaaactatgacctctttaacgctagaatgg
tctcagagcttccagtggtaaatttctgaaactcccagggcgtgatcaga
ttgtgtatgggcagactcaactttgtgatttagacaaacctaacccacga
tacctgggacaatacggcatctaagataaatgctcgcttctttgacttat
ttattttatttctctaacgattggttgaggaaaggactaatgattgagga
agcctccaacattaacataacagacaccttaataggcagtgacagacatc
ttgataggcagtgtaaatttaactgttcagtgagcttagatctcttcgtc
ctatcacagtatgtggaaagtattggaagatgaagccagctactcacaac
acagtgctagaaagggtgatgcagtaaggggacatgccatcatagaagct
attgctagtgcaggaggcttctcaaagtgacaaggcaataacaggtatca
cccctgaagcatataaactcctggccaccatgggcttctcagattgtggc
agctgtgcttggctatctcttagcatcaagatgagagacataagaactac
tcagggcttcctgagtttattctcctctcctcactgatagagctgctata
cctacataatggtcattgccaaagatcctagacaatgggtttctggtctt
tacttattttttctcttggtatttcctctgactgtagatctatatagtac
tgcctgactgtgtcttggcctgagtgacaaggtgccctctgggggagggg
cggaacataacaaaagcttgcagccttttagtcacctggtaggttacact
gacacttcatctattttacactcttgctacacagtggcaggaatgagggg
ctaagaggaggctttcagtagttagaatatcagagccaacttggagtacc
atgtctaaagtttccgttgtttgcagagtttccttttgccacccaagtac
aggaatacatttgttaatgacgataaactgatatgagaatatccacgact
atccacaattcatattattatgtcctagtatttatattgtctaaatcttt
ccctccaactgggtgtcttctggacgtaa
gaattcactcttttgatcaggctggccttgaacacagagagatctcctgt
ctctgcttccagagtgctgggataaagggcgtgtcccactcctgacctcc
ttcaactttatttcacatgtgcttctctctagaaactctctttctgagca
ggaaaatggttttttgttgttgttggtggtggtttttttgttttggtatt
agaaatgaacaggagggtgttcatattggtcaggttgtagaacccaaagg
atctatgtttggatcctgaaatctagcttgttgtagcataatagctgtct
ggctgtagactgatcagctaccttagttgtatttatagtttgctcctgag
cttggaagtttccttttttgatattttagaaactgatatacttccgaaaa
cttgtacacaaaccctcttccacacatccacttccacagaaatatcatca
gtgaaaaaggcagaaatttagaaataggcaaagaagaggtctttatatca
catagcttctaggaaaagcccttttccatcagtcactgcccatttcatgt
ttccttactctctttattcagtaggcttctctctcagtcagtccttaaag
aagcatatttttccattgtatggagcaaaattttcatcagtaaattttct
tatgattttcacttaagtccaaattacttattagtgggtacactatccaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78100598_78101721
seq2: B6Ng01-201N02.b_42_1170

seq1  GAATTCATAACGAAAATCTCAAAACTATGACCTCTTTAACGCTAGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACGAAAATCTCAAAACTATGACCTCTTTAACGCTAGAATGG  50

seq1  TCTCAGAGCTTCCAGTGGTAAATTTCTGAAACTCCCAGGGCGTGATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCTTCCAGTGGTAAATTTCTGAAACTCCCAGGGCGTGATCAGA  100

seq1  TTGTGTATGGGCAGACTCAACTTTGTGATTTAGACAAACCTAACCCACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGGGCAGACTCAACTTTGTGATTTAGACAAACCTAACCCACGA  150

seq1  TACCTGGGACAATACGGCATCTAAGATAAATGCTCGCTTCTTTGACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGACAATACGGCATCTAAGATAAATGCTCGCTTCTTTGACTTAT  200

seq1  TTATTTTATTTCTCTAACGATTGGTTGAGGAAAGGACTAATGATTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTCTCTAACGATTGGTTGAGGAAAGGACTAATGATTGAGGA  250

seq1  AGCCTCCAACATTAACATAACAGACACCTTAATAGGCAGTGACAGACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAACATTAACATAACAGACACCTTAATAGGCAGTGACAGACATC  300

seq1  TTGATAGGCAGTGTAAATTTAACTGTTCAGTGAGCTTAGATCTCTTCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGCAGTGTAAATTTAACTGTTCAGTGAGCTTAGATCTCTTCGTC  350

seq1  CTATCACAGTATGTGGAAAGTATTGGAAGATGAAGCCAGCTACTCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAGTATGTGGAAAGTATTGGAAGATGAAGCCAGCTACTCACAAC  400

seq1  ACAGTGCTAGAAAGGGTGATGCAGTAAGGGGACATGCCATCATAGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTAGAAAGGGTGATGCAGTAAGGGGACATGCCATCATAGAAGCT  450

seq1  ATTGCTAGTGCAGGAGGCTTCTCAAAGTGACAAGGCAATAACAGGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGTGCAGGAGGCTTCTCAAAGTGACAAGGCAATAACAGGTATCA  500

seq1  CCCCTGAAGCATATAAACTCCTGGCCACCATGGGCTTCTCAGATTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAGCATATAAACTCCTGGCCACCATGGGCTTCTCAGATTGTGGC  550

seq1  AGCTGTGCTTGGCTATCTCTTAGCATCAAGATGAGAGACATAAGAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTTGGCTATCTCTTAGCATCAAGATGAGAGACATAAGAACTAC  600

seq1  TCAGGGCTTCCTGAGTTTATTCTCCTCTCCTCACTGATAGAGCTGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTTCCTGAGTTTATTCTCCTCTCCTCACTGATAGAGCTGCTATA  650

seq1  CCTACATAATGGTCATTGCCAAAGATCCTAGACAATGGGTTTCTGGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAATGGTCATTGCCAAAGATCCTAGACAATGGGTTTCTGGTCTT  700

seq1  TACTTATTTTTTCTCTTGGTATTTCCTCTGACTGTAGATCTATATAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTTTCTCTTGGTATTTCCTCTGACTGTAGATCTATATAGTAC  750

seq1  TGCCTGACTGTGTCTTGGCCTGAGTGACAAGGTGCCCTCTGGGGGAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTGTGTCTTGGCCTGAGTGACAAGGTGCCCTCTGGGGGAGGGG  800

seq1  CGGAACATAACAAAAGCTTGCAGCCTTTTAGTCACCTGGTAGGTTACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACATAACAAAAGCTTGCAGCCTTTTAGTCACCTGGTAGGTTACACT  850

seq1  GACACTTCATCTATTTTACACTCTTGCTACACAGTGGCAGGAATGAGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCATCTATTTTACACTCTTGCTACACAGTGGCAGGAATGAGGGG  900

seq1  CTAAGAGGAGGCTTTCAGTAGTTAGAATATCAGAGCCAAC-TGGAGTACC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAGAGGAGGCTTTCAGTAGTTAGAATATCAGAGCCAACTTGGAGTACC  950

seq1  ATGTCTAAAAGTTTCCGT--GTTGCAGAGTTTCCTTTTGCCACCCAAGTA  997
      |||||| |||||||||||   |||||||||||||||||||||||||||||
seq2  ATGTCT-AAAGTTTCCGTTGTTTGCAGAGTTTCCTTTTGCCACCCAAGTA  999

seq1  CAGGAATACATTTGTAAATGAACGAAGGAAACTGATATGAGAATAT-CAC  1046
      ||||||||||||||| |||| ||||   |||||||||||||||||| |||
seq2  CAGGAATACATTTGTTAATG-ACGA--TAAACTGATATGAGAATATCCAC  1046

seq1  GACTATCACAAATTCAATATTATTATGT-CTAGTA-TTATTATGTCT-AA  1093
      |||||||   ||||| |||||||||||| |||||| ||||  ||||| ||
seq2  GACTATCCACAATTC-ATATTATTATGTCCTAGTATTTATATTGTCTAAA  1095

seq1  TCTTTCCCT-CAACTGGTTGTC-TCT-GACGTAA  1124
      ||||||||| ||||||| |||| ||| |||||||
seq2  TCTTTCCCTCCAACTGGGTGTCTTCTGGACGTAA  1129

seq1: chr7_78257996_78258686
seq2: B6Ng01-201N02.g_68_767 (reverse)

seq1  TTGGATAGTGTA-CCACTAATAAGTTATTTGGACTTAAGTG-AAATCATA  48
      |||||||||||| |||||||||||| ||||||||||||||| ||||||||
seq2  TTGGATAGTGTACCCACTAATAAGTAATTTGGACTTAAGTGAAAATCATA  50

seq1  AGAAAA-TTACTGATG-AAATTTTGCTCCATACAATGG-AAAATATGCTT  95
      |||||| ||||||||| ||||||||||||||||||||| |||||||||||
seq2  AGAAAATTTACTGATGAAAATTTTGCTCCATACAATGGAAAAATATGCTT  100

seq1  C-TTAAGGACTGACTGAGAGAGAAGCCTACTGAAT-AAGAGAGTAAGGAA  143
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTTAAGGACTGACTGAGAGAGAAGCCTACTGAATAAAGAGAGTAAGGAA  150

seq1  ACATG-AATGGGCAGTGACTGATGGAAAAGGGCTTTTCCTAGAAGCTATG  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATGGGCAGTGACTGATGGAAAAGGGCTTTTCCTAGAAGCTATG  200

seq1  TGATAT-AAGACCTCTTCTTTGCCTATTTCTAAATTTCTGCCTTTTTCAC  241
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGACCTCTTCTTTGCCTATTTCTAAATTTCTGCCTTTTTCAC  250

seq1  TGATGATATTTCTGTGGATGTGGATGTGTGGAAGAGGGTTTGTGTACAAG  291
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGATGATATTTCTGTGGAAGTGGATGTGTGGAAGAGGGTTTGTGTACAAG  300

seq1  TTTTCGGAAGTATATCAGTTTCTAAAATATCAAAAAAGGAAACTTCCAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGGAAGTATATCAGTTTCTAAAATATCAAAAAAGGAAACTTCCAAG  350

seq1  CTCAGGAGCAAACTATAAATACAACTAAGGTAGCTGATCAGTCTACAGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGCAAACTATAAATACAACTAAGGTAGCTGATCAGTCTACAGCC  400

seq1  AGACAGCTATTATGCTACAACAAGCTAGATTTCAGGATCCAAACATAGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTATTATGCTACAACAAGCTAGATTTCAGGATCCAAACATAGAT  450

seq1  CCTTTGGGTTCTACAACCTGACCAATATGAACACCCTCCTGTTCATTTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGTTCTACAACCTGACCAATATGAACACCCTCCTGTTCATTTCT  500

seq1  AATACCAAAACAAAAAAACCACCACCAACAACAACAAAAAACCATTTTCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAAACAAAAAAACCACCACCAACAACAACAAAAAACCATTTTCC  550

seq1  TGCTCAGAAAGAGAGTTTCTAGAGAGAAGCACATGTGAAATAAAGTTGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAAAGAGAGTTTCTAGAGAGAAGCACATGTGAAATAAAGTTGAA  600

seq1  GGAGGTCAGGAGTGGGACACGCCCTTTATCCCAGCACTCTGGAAGCAGAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGGAGTGGGACACGCCCTTTATCCCAGCACTCTGGAAGCAGAG  650

seq1  ACAGGAGATCTCTCTGTGTTCAAGGCCAGCCTGATCAAAAGAGTGAATTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGATCTCTCTGTGTTCAAGGCCAGCCTGATCAAAAGAGTGAATTC  700