BAC Information

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BAC

Clone NameB6Ng01-201O01
Chromosome7 (Build37)
Map Location 24,388,722 - 24,572,855
singlet/doubletdoublet
Overlap geneEG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573
Upstream geneLOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103
Downstream geneEG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201O01.bB6Ng01-201O01.g
ACCGA022529GA022530
length1,1081,072
definitionB6Ng01-201O01.b B6Ng01-201O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,388,722 - 24,389,828)(24,571,786 - 24,572,855)
sequence
gaattcctacaactgataacctcagcaaaaactaacttaaaaaatattac
ctttcctatactcaaagaataaacaggctcagaaataaattaggaaaatg
acatctttcataatagtaacaaacaatataaaatatcttattgtgaatct
aactaagcaagtgaaagatctgtatgacaagaacttcaagtctctgaaga
aagaaactgaggttctcacaagatggaaagctcttccctgctctcgtatt
ggccaggttagtatagtaaaaatgaccatcttgctgaaagcaatctacag
attcaatgcaatccccatcaaaattccaactcaattcttcataaagttag
aaagagcaatttacaaattcatctggaatgactaaaaacccactttgtca
tactacaaagtcgctgtctgtacatgagaatataaaagacaccagatcac
atattgtctgtctggaagtacttgattttagcatgattttgcaaaaagaa
aagcatatggtgtaatgtacccccccaccccccaggaaatacatctaaga
aatctcttgatctccactggagtgcttctttctactcttgatgacaacat
caattcagaacttagaatctttcaaaggaaacttgactagtcattaagtt
ctaacaaactcttggcatcatccttaattaccagaaagtgaaaatgattt
gctctggggataaatgtttttttctttcattagaggtattgcaacatccc
cacacagacacaataaataatatcacagataacacagtaatggggtctct
gagtgatgtcagggccacgcattgtctcttcatgagctctgatagtgggt
ctcagtcagtgatcagtgaatcacttcatggaaaatatggggcaggtaag
gatttcttttggatctgtcttctgaaataattacacagaaaagatcatca
aacgtagtggaaatcagactctgtttctgcagtaactctcagaagcagcc
ttcatccctgtgagcattctcaacattgataaatgtaggtggagattcct
gcaattgtaaatatttggcttagactagaatttcttatgcaatcatgggt
gtttcgta
gaattctctttggtagtgacaggaagcagcacatgtttcagaagcagttc
atgattgtcttcctcaccctcttccagtggtgtcaccaggtatgagggga
aggatagcctgcatcctcaggctggccatcagtaatgggctcttactgaa
tgatagcaacattctgaatgatggcctcttcctgtttgatggcctctttc
tgtgaaaggttcctttcctccatgagggttttttttttctgaaaggtatc
cccagaggaggagtctgtgagtggtacactcttaggtgcctgcagagatc
cagagaactcctcttgggaactgcaggagaatgtattcctgtcaaactta
tatccgatgactctcatggtcctgaccatgctagggctcggggtgcctgg
gaaaatctgtgtggaattaggtggtaaacctgcttcactgtccctgtccc
tgatcattgggtgcctcatgatttggagaatggtcagcctcctgcaggga
ttgatattaagtatttctatgatgatattgaaaatattaatggaatcata
aggaatgctgatgtttacagttatgatctgccacctcacctccacataag
accagtcttttaaggcaagctccctgccaacatgaggacctctaaactcc
agatatccacagggagaccctcaaattcctctgctttcaagagttctggg
gcaaagtcagggagtgtgccaaagaaatcaaccagcttctgtccaggaat
cactttagcagccaggacaaaatcacacagcttggtggtcctcctgtagt
tgatcaaactgttgctggcctttatgtctgtgtggacaatgtgatggcca
tggcagtactgcactgcatgtactatctgggcaaacatccttcaagtctc
actctcctctaaagaccccaactggaagattcagtctagtagctctccct
ctgaggcatactcaatcaccaggtagtggtctttcttctctggaccacat
gaatcagcttgatattgttaggatggctaagggacttccataatcctggc
ttcccatgcagaatgactgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24388722_24389828
seq2: B6Ng01-201O01.b_42_1149

seq1  GAATTCCTACAACTGATAACCTCAGCAAAAACTAACTTAAAAAATATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAACTGATAACCTCAGCAAAAACTAACTTAAAAAATATTAC  50

seq1  CTTTCCTATACTCAAAGAATAAACAGGCTCAGAAATAAATTAGGAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATACTCAAAGAATAAACAGGCTCAGAAATAAATTAGGAAAATG  100

seq1  ACATCTTTCATAATAGTAACAAACAATATAAAATATCTTATTGTGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTCATAATAGTAACAAACAATATAAAATATCTTATTGTGAATCT  150

seq1  AACTAAGCAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGA  200

seq1  AAGAAACTGAGGTTCTCACAAGATGGAAAGCTCTTCCCTGCTCTCGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGAGGTTCTCACAAGATGGAAAGCTCTTCCCTGCTCTCGTATT  250

seq1  GGCCAGGTTAGTATAGTAAAAATGACCATCTTGCTGAAAGCAATCTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTAGTATAGTAAAAATGACCATCTTGCTGAAAGCAATCTACAG  300

seq1  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCATAAAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCATAAAGTTAG  350

seq1  AAAGAGCAATTTACAAATTCATCTGGAATGACTAAAAACCCACTTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAATTTACAAATTCATCTGGAATGACTAAAAACCCACTTTGTCA  400

seq1  TACTACAAAGTCGCTGTCTGTACATGAGAATATAAAAGACACCAGATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAGTCGCTGTCTGTACATGAGAATATAAAAGACACCAGATCAC  450

seq1  ATATTGTCTGTCTGGAAGTACTTGATTTTAGCATGATTTTGCAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCTGTCTGGAAGTACTTGATTTTAGCATGATTTTGCAAAAAGAA  500

seq1  AAGCATATGGTGTAATGTACCCCCCCACCCCCCAGGAAATACATCTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATGGTGTAATGTACCCCCCCACCCCCCAGGAAATACATCTAAGA  550

seq1  AATCTCTTGATCTCCACTGGAGTGCTTCTTTCTACTCTTGATGACAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGATCTCCACTGGAGTGCTTCTTTCTACTCTTGATGACAACAT  600

seq1  CAATTCAGAACTTAGAATCTTTCAAAGGAAACTTGACTAGTCATTAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGAACTTAGAATCTTTCAAAGGAAACTTGACTAGTCATTAAGTT  650

seq1  CTAACAAACTCTTGGCATCATCCTTAATTACCAGAAAGTGAAAATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAACTCTTGGCATCATCCTTAATTACCAGAAAGTGAAAATGATTT  700

seq1  GCTCTGGGGATAAATGTTTTTTTCTTTCATTAGAGGTATTGCAACATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGATAAATGTTTTTTTCTTTCATTAGAGGTATTGCAACATCCC  750

seq1  CACACAGACACAATAAATAATATCACAGATAACACAGTAATGGGGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACAATAAATAATATCACAGATAACACAGTAATGGGGTCTCT  800

seq1  GAGTGATGTCAGGGCCACGCATTGTCTCTTCATGAGCTCTGATAGTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGTCAGGGCCACGCATTGTCTCTTCATGAGCTCTGATAGTGGGT  850

seq1  CTCAGTCAGTGATCAGTGAATCACTTCATGGAAAATATGGGGCAGGTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGTGATCAGTGAATCACTTCATGGAAAATATGGGGCAGGTAAG  900

seq1  GATTTCTTTTGGATCTGTCTTCTGAAATAATTACACAGAAAAGATCATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTTGGATCTGTCTTCTGAAATAATTACACAGAAAAGATCATCA  950

seq1  AACGTAGTGGAATTCAGAACTCTGTTTCTGCAGTAACTCTCAGAAGCAGG  1000
      |||||||||||| |||| |||||||||||||||||||||||||||||| |
seq2  AACGTAGTGGAAATCAG-ACTCTGTTTCTGCAGTAACTCTCAGAAGCA-G  998

seq1  CCTTCATCCCTGTGAGCATCTCCAACATTGATAAATGTAGGT-GAGATTC  1049
      |||||||||||||||||||   |||||||||||||||||||| |||||||
seq2  CCTTCATCCCTGTGAGCATTCTCAACATTGATAAATGTAGGTGGAGATTC  1048

seq1  CTGCAATTGTAAATATTT-GCTTAGACTAG-ATTTCTTATGCAATCAATG  1097
      |||||||||||||||||| ||||||||||| ||||||||||||||||  |
seq2  CTGCAATTGTAAATATTTGGCTTAGACTAGAATTTCTTATGCAATCATGG  1098

seq1  GTGTTTCGTA  1107
      ||||||||||
seq2  GTGTTTCGTA  1108

seq1: chr7_24571786_24572855
seq2: B6Ng01-201O01.g_63_1134 (reverse)

seq1  CCTCAGTCA-TCTGCAT-GGAAGCCAGGATTAT-GAAGTCCCTTAGCCAT  47
      ||||||||| ||||||| ||||||||||||||| ||||||||||||||||
seq2  CCTCAGTCATTCTGCATGGGAAGCCAGGATTATGGAAGTCCCTTAGCCAT  50

seq1  CCTAACAATATCAAGCTGATTCATGTGGTCCAGAGAAGAAAGACCACCTA  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTAACAATATCAAGCTGATTCATGTGGTCCAGAGAAGAAAGACCA-CTA  99

seq1  CCTGGTGATTGAGTATGCCTCAGAGGGAGAGCTACTAGACTGAATCTTCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGATTGAGTATGCCTCAGAGGGAGAGCTACTAGACTGAATCTTCC  149

seq1  AGTTGGGGTCTTTAGAGGAGAGTGAGACTTGAAGGATGTTTGCCCAGATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGTCTTTAGAGGAGAGTGAGACTTGAAGGATGTTTGCCCAGATA  199

seq1  GTACATGCAGTGCAGTACTGCCATGGCCATCACATTGTCCACACAGACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCAGTGCAGTACTGCCATGGCCATCACATTGTCCACACAGACAT  249

seq1  AAAGGCCAGCAACAGTTTGATCAACTACAGGAGGACCACCAAGCTGTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGCAACAGTTTGATCAACTACAGGAGGACCACCAAGCTGTGTG  299

seq1  ATTTTGTCCTGGCTGCTAAAGTGATTCCTGGACAGAAGCTGGTTGATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCTGGCTGCTAAAGTGATTCCTGGACAGAAGCTGGTTGATTTC  349

seq1  TTTGGCACACTCCCTGACTTTGCCCCAGAACTCTTGAAAGCAGAGGAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCACACTCCCTGACTTTGCCCCAGAACTCTTGAAAGCAGAGGAATT  399

seq1  TGAGGGTCTCCCTGTGGATATCTGGAGTTTAGAGGTCCTCATGTTGGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTCCCTGTGGATATCTGGAGTTTAGAGGTCCTCATGTTGGCAG  449

seq1  GGAGCTTGCCTTAAAAGACTGGTCTTATGTGGAGGTGAGGTGGCAGATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGCCTTAAAAGACTGGTCTTATGTGGAGGTGAGGTGGCAGATCA  499

seq1  TAACTGTAAACATCAGCATTCCTTATGATTCCATTAATATTTTCAATATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAAACATCAGCATTCCTTATGATTCCATTAATATTTTCAATATC  549

seq1  ATCATAGAAATACTTAATATCAATCCCTGCAGGAGGCTGACCATTCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGAAATACTTAATATCAATCCCTGCAGGAGGCTGACCATTCTCCA  599

seq1  AATCATGAGGCACCCAATGATCAGGGACAGGGACAGTGAAGCAGGTTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGGCACCCAATGATCAGGGACAGGGACAGTGAAGCAGGTTTAC  649

seq1  CACCTAATTCCACACAGATTTTCCCAGGCACCCCGAGCCCTAGCATGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATTCCACACAGATTTTCCCAGGCACCCCGAGCCCTAGCATGGTC  699

seq1  AGGACCATGAGAGTCATCGGATATAAGTTTGACAGGAATACATTCTCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATGAGAGTCATCGGATATAAGTTTGACAGGAATACATTCTCCTG  749

seq1  CAGTTCCCAAGAGGAGTTCTCTGGATCTCTGCAGGCACCTAAGAGTGTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAAGAGGAGTTCTCTGGATCTCTGCAGGCACCTAAGAGTGTAC  799

seq1  CACTCACAGACTCCTCCTCTGGGGATACCTTTCAGAAAAAAAAAACCCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAGACTCCTCCTCTGGGGATACCTTTCAGAAAAAAAAAACCCTC  849

seq1  ATGGAGGAAAGGAACCTTTCACAGAAAGAGGCCATCAAACAGGAAGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAAAGGAACCTTTCACAGAAAGAGGCCATCAAACAGGAAGAGGC  899

seq1  CATCATTCAGAATGTTGCTATCATTCAGTAAGAGCCCATTACTGATGGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCAGAATGTTGCTATCATTCAGTAAGAGCCCATTACTGATGGCC  949

seq1  AGCCTGAGGATGCAGGCTATCCTTCCCCTCATACCTGGTGACACCACTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGGATGCAGGCTATCCTTCCCCTCATACCTGGTGACACCACTGG  999

seq1  AAGAGGGTGAGGAAGACAATCATGAACTGCTTCTGAAACATGTGCTGCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTGAGGAAGACAATCATGAACTGCTTCTGAAACATGTGCTGCTT  1049

seq1  CCTGTCACTACCAAAGAGAATTC  1070
      |||||||||||||||||||||||
seq2  CCTGTCACTACCAAAGAGAATTC  1072