BAC Information

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BAC

Clone NameB6Ng01-202A18
Chromosome7 (Build37)
Map Location 11,671,884 - 11,672,905
singlet/doubletsinglet
Overlap geneLOC635187
Upstream geneLOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1
Downstream geneLOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202A18.bB6Ng01-202A18.g
ACCGA022648GA022649
length1,035884
definitionB6Ng01-202A18.b B6Ng01-202A18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctcacatggaaggcccagatacaaactgggccttggggttaa
caagcaccttttccaaatacaaacttttaaaatgcacttgcaaattgaaa
gaattgggtgggtagggtgatgaactcagtagatagaacagttcctttgt
gatcaggaaacctgactttaaatgaaatgaacctgcaaatacctggccat
gactcaggattaatttaacccctgccttgagtgatggagacaggcagatc
ctaaaagctggccagcctctggcagaaatgactgggtgaggtccaatgag
agaccttgccttaaaggaatatagttaataaagacactgaatgtcatcct
ctgtctttgttagtgtgtgtctgtaggtatgtacacacacacacacacac
acacacacatacacaacacaaatagagttttgctttcctagtctttatca
gtgtttgcctttgccagtaagattccatgtaaaattagcaaacatcccag
gaaggaatttccctatgtcgatgagctacatttccttggttcctcttgag
acacacaccatcattatgtacatcttaaatcttcctcagacgaaaggata
gaccatctagagactgccatacccacggatccaccccataatcagactcc
aaactctgacaccattttatacaccagcaagattttgctgaaaggaccct
gatatagctgtctcttgtgaggctatgccagggatgggtaaacacagaag
tggaggctcacggttagctattggatggatcacagggcccccaatggaag
agctagagaaagtacccaaggagctaaaggagttctgcaacctctataag
gtagaaaaaacaatatgaactaaccagtaacctcccagagctcatgtctc
tagctgcactatgaatatagaatgatgagcctagtcggccattattgggg
aagaagaaagccacatggtcttgcaaattttatatacctcagtacaagcg
aattgcaaagacaagaagtggaagtgggggggggt
gaattcattggtcttaccatgttccccatcatcctgaaacagttggtctg
atagaaagatggaatggccttttgaagatgcagttacagcgccaattagg
tggtaacagcatggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagtgtctgatatatggtaaagtttcccccatagccaggatc
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtcaccataattc
taggttctgctggcctagaagttttggctccagacgggggagtgctccta
ccagaagctacaacaaatattctattgaactggaagctcagacttccccc
tggttattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagatttcatggggaaattggat
tacctcttcacaatggaggtaagcaagattatgtctggagtgtaggagat
cccttagggcgtctcttagtactaccatgtcctgtgattatagtcaatgg
gaaactacaacagcctaatccaagtaggatgtcaaagggcacagacccat
caggaatgaaggtatgggtcaatcctccaggaagaaatccaagacctgct
gaggtgctggctgaaggtgaaggaaattcagaatgggtagtagaggaata
tccctccatggcttctgcatcagctcctgcttcctgatctgcttgagttc
cagtccctgacttcatttggtcatacagcagtatggaagtgtagctgata
accctttcctccccaactgctctttggttatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11671884_11672905
seq2: B6Ng01-202A18.b_45_1079

seq1  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50

seq1  CAAGCACCTTTTCCAAATACAAACTTTTAAAATGCACTTGCAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCTTTTCCAAATACAAACTTTTAAAATGCACTTGCAAATTGAAA  100

seq1  GAATTGGGTGGGTAGGGTGATGAACTCAGTAGATAGAACAGTTCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTGGGTAGGGTGATGAACTCAGTAGATAGAACAGTTCCTTTGT  150

seq1  GATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGGCCAT  200

seq1  GACTCAGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAGGCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAGGCAGATC  250

seq1  CTAAAAGCTGGCCAGCCTCTGGCAGAAATGACTGGGTGAGGTCCAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCTGGCCAGCCTCTGGCAGAAATGACTGGGTGAGGTCCAATGAG  300

seq1  AGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCCT  350

seq1  CTGTCTTTGTTAGTGTGTGTCTGTAGGTATGTACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGTTAGTGTGTGTCTGTAGGTATGTACACACACACACACACAC  400

seq1  ACACACACATACACAACACAAATAGAGTTTTGCTTTCCTAGTCTTTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACACAACACAAATAGAGTTTTGCTTTCCTAGTCTTTATCA  450

seq1  GTGTTTGCCTTTGCCAGTAAGATTCCATGTAAAATTAGCAAACATCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCCTTTGCCAGTAAGATTCCATGTAAAATTAGCAAACATCCCAG  500

seq1  GAAGGAATTTCCCTATGTCGATGAGCTACATTTCCTTGGTTCCTCTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATTTCCCTATGTCGATGAGCTACATTTCCTTGGTTCCTCTTGAG  550

seq1  ACACACACCATCATTATGTACATCTTAAATCTTCCTCAGACGAAAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCATCATTATGTACATCTTAAATCTTCCTCAGACGAAAGGATA  600

seq1  GACCATCTAGAGACTGCCATACCCACGGATCCACCCCATAATCAGACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTAGAGACTGCCATACCCACGGATCCACCCCATAATCAGACTCC  650

seq1  AAACTCTGACACCATTTTATACACCAGCAAGATTTTGCTGAAAGGACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGACACCATTTTATACACCAGCAAGATTTTGCTGAAAGGACCCT  700

seq1  GATATAGCTGTCTCTTGTGAGGCTATGCCAGGGATGGGTAAACACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCTGTCTCTTGTGAGGCTATGCCAGGGATGGGTAAACACAGAAG  750

seq1  TGGAGGCTCACGGTTAGCTATTGGATGGATCACAGGGCCCCCAATGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCACGGTTAGCTATTGGATGGATCACAGGGCCCCCAATGGAAG  800

seq1  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGAG-TCTGCAACC-CTATAA-  847
      |||||||||||||||||||||||||||||||| ||||||||| |||||| 
seq2  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGAGTTCTGCAACCTCTATAAG  850

seq1  GTAG-AAAAACAATATGAACTAACCAGT-ACCT-CCAGAGCTCATGTCTC  894
      |||| ||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GTAGAAAAAACAATATGAACTAACCAGTAACCTCCCAGAGCTCATGTCTC  900

seq1  TAGCTGCA-TATGTAT-TAGAA-GATG-GCCTAGTCGGCCATTATT-GGG  939
      |||||||| |||| || ||||| |||| |||||||||||||||||| |||
seq2  TAGCTGCACTATGAATATAGAATGATGAGCCTAGTCGGCCATTATTGGGG  950

seq1  AAGA--GAGGCCCCTTGGTCTTGCAAACTTTATATACCTCAGTACAGGCG  987
      ||||   | ||| | |||||||||||| |||||||||||||||||| |||
seq2  AAGAAGAAAGCCACATGGTCTTGCAAATTTTATATACCTCAGTACAAGCG  1000

seq1  AA-TGCCAAGACCAAGAAGTGGGAGTGGGGGGGGGT  1022
      || ||| |||| |||||||||| |||||||||||||
seq2  AATTGCAAAGA-CAAGAAGTGGAAGTGGGGGGGGGT  1035