BAC Information

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BAC

Clone NameB6Ng01-204J17
Chromosome7 (Build37)
Map Location 8,966,633 - 9,059,362
singlet/doubletdoublet
Overlap geneV2r14, EG628128, EG434109
Upstream geneLOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754
Downstream geneLOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204J17.bB6Ng01-204J17.g
ACCGA024504GA024505
length1,1131,154
definitionB6Ng01-204J17.b B6Ng01-204J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,966,633 - 8,967,734)(9,058,207 - 9,059,362)
sequence
gaattcttcaaatcttcaattaactttaaaccatctaatatttattcagc
tttttccaatatttgaagccactgcagagctatttgacatcatgggatac
tccatattcaaggtcgctacagaataatttatcatctccaaccatattta
atcagtgtctgcatactctactatttttatatacattttctcaagctttg
caacagtaatttatttgaggtcatatttgttatctgtgactgaaaggaca
tatttttcatatttcaaatttcttcaaatactaacttgcttctctgttgc
tttaattaaactttgataaggaaagtgaggaggaaggtgtgatttgacat
atggcttatagttatagagagacaagtgtggatataaggaaactggaact
aaagaatagattattttctttgtgataagacaaggcaaaatcttttaata
tcagtttcccaaaacatttttctgattctcccattaatgaaaaaaactgc
caacattactttaggctgtttttttttcccaaaagatcttaaaagaacac
tacgtactgtctcaactgcccacagtaagatggacattcttacatcaatt
accaaagaagaaaatgcttcaaagatatgaggacaggctagtgttggctg
agagaatatttcaattaagtttcctctgtccatagcacttagaaccaagt
tgaaaataattaactaaaaaacgtcaggttgcaaattctgtagttttcac
atacagctcaatatcagcactttttttcctaaattactagacactcagat
accatgcaatattttttcaacgcatttccaatattcatttctggcccatt
aaataatggacattgtaaaattgtcaatcaggggcctggcagtggtggca
ccacaccttttaatcccagcacttggaaaggcagaggccaggtggatttt
cttgagtttaaaggccagctctttttccaacaaagttgagttttcaggac
aagccaaggctacacagagaaacccctgcctcaacactacaccctcactc
ccaccccacactaaacaaaacaaaagccaatatgtcaaccagattctgtg
aaataaatgagct
gaattccaaacacagagaaaaatgcagatccaaacacaggtatgcaacac
acacacacacacacaccaaacacacgcacacaaacacacgaatatacaca
cagacacctagagtggctcacatcttttccaagtcacacatataatacat
ctatacattcatttacaaacaaatatacgtacatgttgacacacatatgt
aaatattcattcacataagtgacaatcttatccactcaaataaaaacaca
gatatgaaatcacacaaaataatacactggcacacatacaaccacacaca
cagacatacagacatacacacacacactcacacaaacacacacacacaca
cacacagagagagagagagagagagagagagagagagagagagagaggga
ggctgacagcaaaacacggggagtggtataaatatataaggaacagccat
gaataatattgacacacagagagttttatattcacacctaaagacaaaaa
ggaaggcaaaggccttgccaagtacaaagaaataggcagacacatacata
gtaaagcaggtacaaatccatataagtacttataaacacttacaaaatac
atacattgaacacaatgaaacctactctgacaaaaccccaaagaaacata
cacacatatataaacaaacacttatagaaagaaattcctacatagaaata
attgttgctcaattccactttcatacagagagataaaacatatatgttga
aagtaacacaaatataaatgcagatacacagaaagagtagaaaatataca
tatactcagtgagaagcatacattcacacataaaaacatatttgtacaga
cagaaatgaataccaacactatttcttgtttagttactctcagaaaaccc
agcatgttctccagagcctacactctttgcagaatcactggattacacta
atgaaaatattcctccaaatgattcatataattgaccaaatataaataaa
aactcatcttctaatcatggaaaaaatttatgaggaaagaacttttttat
tatccaatattagaacggcatgcctataagatatttgttgctcgtataaa
aaaccacaacatttcaactgctacttggatctttccaatcacattccata
acaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8966633_8967734
seq2: B6Ng01-204J17.b_50_1162

seq1  GAATTCTTCAAATCTTCAATTAACTTTAAACCATCTAATATTTATTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATCTTCAATTAACTTTAAACCATCTAATATTTATTCAGC  50

seq1  TTTTTCCAATATTTGAAGCCACTGCAGAGCTATTTGACATCATGGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATATTTGAAGCCACTGCAGAGCTATTTGACATCATGGGATAC  100

seq1  TCCATATTCAAGGTCGCTACAGAATAATTTATCATCTCCAACCATATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTCAAGGTCGCTACAGAATAATTTATCATCTCCAACCATATTTA  150

seq1  ATCAGTGTCTGCATACTCTACTATTTTTATATACATTTTCTCAAGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTCTGCATACTCTACTATTTTTATATACATTTTCTCAAGCTTTG  200

seq1  CAACAGTAATTTATTTGAGGTCATATTTGTTATCTGTGACTGAAAGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAATTTATTTGAGGTCATATTTGTTATCTGTGACTGAAAGGACA  250

seq1  TATTTTTCATATTTCAAATTTCTTCAAATACTAACTTGCTTCTCTGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCATATTTCAAATTTCTTCAAATACTAACTTGCTTCTCTGTTGC  300

seq1  TTTAATTAAACTTTGATAAGGAAAGTGAGGAGGAAGGTGTGATTTGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAACTTTGATAAGGAAAGTGAGGAGGAAGGTGTGATTTGACAT  350

seq1  ATGGCTTATAGTTATAGAGAGACAAGTGTGGATATAAGGAAACTGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTATAGTTATAGAGAGACAAGTGTGGATATAAGGAAACTGGAACT  400

seq1  AAAGAATAGATTATTTTCTTTGTGATAAGACAAGGCAAAATCTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGATTATTTTCTTTGTGATAAGACAAGGCAAAATCTTTTAATA  450

seq1  TCAGTTTCCCAAAACATTTTTCTGATTCTCCCATTAATGAAAAAAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCCAAAACATTTTTCTGATTCTCCCATTAATGAAAAAAACTGC  500

seq1  CAACATTACTTTAGGCTGTTTTTTTTTCCCAAAAGATCTTAAAAGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTACTTTAGGCTGTTTTTTTTTCCCAAAAGATCTTAAAAGAACAC  550

seq1  TACGTACTGTCTCAACTGCCCACAGTAAGATGGACATTCTTACATCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACTGTCTCAACTGCCCACAGTAAGATGGACATTCTTACATCAATT  600

seq1  ACCAAAGAAGAAAATGCTTCAAAGATATGAGGACAGGCTAGTGTTGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAAGAAAATGCTTCAAAGATATGAGGACAGGCTAGTGTTGGCTG  650

seq1  AGAGAATATTTCAATTAAGTTTCCTCTGTCCATAGCACTTAGAACCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATTTCAATTAAGTTTCCTCTGTCCATAGCACTTAGAACCAAGT  700

seq1  TGAAAATAATTAACTAAAAAACGTCAGGTTGCAAATTCTGTAGTTTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATTAACTAAAAAACGTCAGGTTGCAAATTCTGTAGTTTTCAC  750

seq1  ATACAGCTCAATATCAGCAC-TTTTTTCCTAAATTACTAGACACTCAGAT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACAGCTCAATATCAGCACTTTTTTTCCTAAATTACTAGACACTCAGAT  800

seq1  ACCATGCAATATTTTTTCAACGCATTTCCAATATTCATTTCTGG-CCATT  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCATGCAATATTTTTTCAACGCATTTCCAATATTCATTTCTGGCCCATT  850

seq1  AAATAATGGACATTGTAAAA-TGTCAATCAGGGGCCTGGCAGTGGTGGCA  897
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATAATGGACATTGTAAAATTGTCAATCAGGGGCCTGGCAGTGGTGGCA  900

seq1  -CACACC-TTTAATCCCAGCACTTGG-AAGGCAGAGG-CAGGTGGATTT-  942
       |||||| |||||||||||||||||| |||||||||| ||||||||||| 
seq2  CCACACCTTTTAATCCCAGCACTTGGAAAGGCAGAGGCCAGGTGGATTTT  950

seq1  -CTGAGTTT-AAGGCCAGC-CTTTT--CCACAAAG-TGAG-TTTCAGGAC  985
        ||||||| ||||||||| |||||  | |||||| |||| |||||||||
seq2  CTTGAGTTTAAAGGCCAGCTCTTTTTCCAACAAAGTTGAGTTTTCAGGAC  1000

seq1  -AGCCAGGGCTACACAGAGAAA-CCCTGCCTCAAAACACACACACACACA  1033
       ||||| ||||||||||||||| ||||||||||| ||  |||| | ||| 
seq2  AAGCCAAGGCTACACAGAGAAACCCCTGCCTCAACAC-TACACCCTCACT  1049

seq1  CACACACACACACAAAACAAAAACAAAAAAGCAAATAAATGTCAACCAGA  1083
      | ||| | ||||| |||||||   | |||||| |||  ||||||||||||
seq2  CCCAC-CCCACACTAAACAAA---ACAAAAGCCAAT--ATGTCAACCAGA  1093

seq1  TTCTGTG-AATAAATGAGCT  1102
      ||||||| ||||||||||||
seq2  TTCTGTGAAATAAATGAGCT  1113

seq1: chr7_9058207_9059362
seq2: B6Ng01-204J17.g_69_1222 (reverse)

seq1  TTGTTAT-GAATGTGATTGGAAAAAGAATTCACAGATTAGCAGTGAAAAT  49
      ||||||| |||||||||||||||    || ||   | |||||||  ||||
seq2  TTGTTATGGAATGTGATTGGAAA---GATCCA---AGTAGCAGTTGAAAT  44

seq1  G-TGTGGTTTTATACA-GAGCAAACAAATATC-TATTAGCATGCCCCTTC  96
      | ||||||||| || | |||| |||||||||| |||  ||||| || |||
seq2  GTTGTGGTTTTTTATACGAGC-AACAAATATCTTATAGGCATG-CCGTTC  92

seq1  TAATATTGGAT-ATAAAAA--GTCTTTCCTCATTAAATTTTTCCATGATT  143
      ||||||||||| |||||||   ||||||||||| || |||||||||||||
seq2  TAATATTGGATAATAAAAAAGTTCTTTCCTCATAAATTTTTTCCATGATT  142

seq1  AGAAGATGAGTTTTTATTTATATTT-GTCAATTATATGGAAATCATTTGG  192
      ||||||||||||||||||||||||| ||||||||||||  ||||||||||
seq2  AGAAGATGAGTTTTTATTTATATTTGGTCAATTATATG--AATCATTTGG  190

seq1  AGGAATTATTTTCATTAGTGTAATCCAGTGATTCTGCAAAGAGTGTAGGC  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAA-TATTTTCATTAGTGTAATCCAGTGATTCTGCAAAGAGTGTAGGC  239

seq1  TCTGGAGAACATGCTGGGTTTTCTGAGAGTAACTAAACAAGAAATAGTGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAACATGCTGGGTTTTCTGAGAGTAACTAAACAAGAAATAGTGT  289

seq1  TGGTATTCATTTCTGTCTGTACAAATATGTTTTTATGTGTGAATGTATGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCATTTCTGTCTGTACAAATATGTTTTTATGTGTGAATGTATGC  339

seq1  TTCTCACTGAGTATATGTATATTTTCTACTCTTTCTGTGTATCTGCATTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGAGTATATGTATATTTTCTACTCTTTCTGTGTATCTGCATTT  389

seq1  ATATTTGTGTTACTTTCAACATATATG-TTTATCTCTCTGTATGAAAGTG  441
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATTTGTGTTACTTTCAACATATATGTTTTATCTCTCTGTATGAAAGTG  439

seq1  GAATTGAGCAACAATTATTTCTATGTAGGAATTTCTTTCTATAAGTGTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGCAACAATTATTTCTATGTAGGAATTTCTTTCTATAAGTGTTT  489

seq1  GTTTATATATGTGTGTATGTTTCTTTGGGGTTTTGTCAGAGTAGGTTTCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATGTGTGTATGTTTCTTTGGGGTTTTGTCAGAGTAGGTTTCA  539

seq1  TTGTGTTCAATGTATGTATTTTGTAAGTGTTTATAAGTACTTATATGGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCAATGTATGTATTTTGTAAGTGTTTATAAGTACTTATATGGAT  589

seq1  TTGTACCTGCTTTACTATGTATGTGTCTGCCTATTTCTTTGTACTTGGCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTGCTTTACTATGTATGTGTCTGCCTATTTCTTTGTACTTGGCA  639

seq1  AGGCCTTTGCCTTCCTTTTTGTCTTTAGGTGTGAATATAAAACTCTCTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTGCCTTCCTTTTTGTCTTTAGGTGTGAATATAAAACTCTCTGT  689

seq1  GTGTCAATATTATTCATGGCTGTTCCTTATATATTTATACCACTCCCCGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATATTATTCATGGCTGTTCCTTATATATTTATACCACTCCCCGT  739

seq1  GTTTTGCTGTCAGCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTGTCAGCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  789

seq1  CTCTCTCTCTCTGTGTGTGTGTGTGTGTGTTTGTGTGAGTGTGTGTGTGT  841
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTTTGTGTGAGTGTGTGTGTGT  839

seq1  ATGTCTGTATGTCTGTGTGTGTGGTTGTATGTGTGCCAGTGTATTATTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTATGTCTGTGTGTGTGGTTGTATGTGTGCCAGTGTATTATTTT  889

seq1  GTGTGATTTCATATCTGTGTTTTTATTTGAGTGGATAAGATTGTCACTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTTCATATCTGTGTTTTTATTTGAGTGGATAAGATTGTCACTTA  939

seq1  TGTGAATGAATATTTACATATGTGTGTCAACATGTACGTATATTTGTTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGAATATTTACATATGTGTGTCAACATGTACGTATATTTGTTTG  989

seq1  TAAATGAATGTATAGATGTATTATATGTGTGACTTGGAAAAGATGTGAGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATGTATAGATGTATTATATGTGTGACTTGGAAAAGATGTGAGC  1039

seq1  CACTCTAGGTGTCTGTGTGTATATTCGTGTGTTTGTGTGCGTGTGTTTGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGGTGTCTGTGTGTATATTCGTGTGTTTGTGTGCGTGTGTTTGG  1089

seq1  TGTGTGTGTGTGTGTGTGTTGCATACCTGTGTTTGGATCTGCATTTTTCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTGCATACCTGTGTTTGGATCTGCATTTTTCT  1139

seq1  CTGTGTTTGGAATTC  1156
      |||||||||||||||
seq2  CTGTGTTTGGAATTC  1154