BAC Information

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BAC

Clone NameB6Ng01-205H15
Chromosome13 (Build37)7 (Build37)
Map Location 48,520,662 - 48,521,07926,646,365 - 26,647,385
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4931429P17Rik, Id4, LOC667351
Downstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205H15.bB6Ng01-205H15.g
ACCGA025146GA025147
length3911,032
definitionB6Ng01-205H15.b B6Ng01-205H15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,520,662 - 48,521,079)(26,646,365 - 26,647,385)
sequence
tcctttgtgatgactaaatagagcaaaagccaatgagttttccagcatat
cctcaagattcattttactgttgctttatttcaccatttccatttgtttt
tcttccccatgggcctctgggctctcaagtccctagttcaatatcaggca
ttcaagcccagacatgacatggttactcccacaagctttgtgccaccatt
gagtgcaggacagcactgtactctgttcatggctggctgcatgtctatga
tttcagtttcggtagcctgtagtgttcctttcatatcaaagatactagag
catagggtagaaatttttatgtagtcaccagcttcacccctccatgttca
gtggagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccaaatgcagatcaagatggtctggaactcacagggatctgtttg
cctctgccttttaaatgataggatcagaggtgtgtgtcactagtccacat
cccttcttgggttcctccttaactctcaaggtaagcagctggaccaagaa
gaggtcatcttgaggctcttagtcccacctgggtcttccttgagcagtcc
ctgaatctcatcatgctctttaaatattcatttatttttgtcttatatgt
atgaatctgtgtatttgcctgaatctttgtggaccacatgcatgcctgtt
tcctgcaaaggtcagaagagggtggtagatcccctggaactggagttaca
gctggttgtgagctctgtgtgggtgctggcagcccaacccaggtccatgg
aacaggttctcttaaccactgagccatctctctagcccagcccccattcc
tgccctttaatgccagggaccgaggaaagcaaggaaagtccctcactaca
aaaaaaaaaacagacaacagacatccttgtgcacagagtgcagtcctagg
ttataaataaggaaacaggagcagagagtttaggatgcttgtccaaggtc
ccacagttcatcaacagttggtctagcttgtaggttgaggcccttttggg
gtctaaccaatgcaataaaccaatccaagatcaattaaactaaaaaagag
ggtgctggaaagatggctcatggggttggagctatggctcagtggttaag
agcactgaatgctctctagaagacctgggttcaactacgagcacccatat
ggcagctcacaatttgtcttgtaactctaatgatctgatgccctcaccct
tgacatactttgcaggcaaacaacaatgcacattaaaaaaaaggtaaaaa
aaaaaattagcttttttggagggcagttacttgggtggggttacaagttc
caaggaatgattgccttggaaaattgtcttgcagatggtggttgcttggg
gactcaatgtgtatggtactagaaaaaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48520662_48521079
seq2: B6Ng01-205H15.b_395_441 (reverse)

seq1  CACACACACACACACACACACACACACACACACA----CACGTGCACACA  46
      ||||||||||||||||||||||||||||||||||    ||| || |||  
seq2  CACACACACACACACACACACACACACACACACAACTCCAC-TGAACA--  47

seq1  CTCGAGTGCTTTGTTTCCCTTCTTTGAAGTTCTTGGCTGTGAGGTGCCCT  96
                                                        
seq2  --------------------------------------------------  47

seq1  CCAGGAGATGCTGCTCTTCAACAGGCCCAAAGCAACAGGCCCAGCCACTT  146
                                                        
seq2  --------------------------------------------------  47

seq1  AAAGCTAAAAAACTGTAAACCAAAATAAGCCTATTCTCTTCACAAGTTGA  196
                                                        
seq2  --------------------------------------------------  47

seq1  TTTTTCTCAACCATTTGTTACAGGAATGGAAACTCAAATGAATGTTAAAT  246
                                                        
seq2  --------------------------------------------------  47

seq1  AAAAATATATGAACAAATATGTGAAAGCTCCCTGTGTCGATGAATTAATA  296
                                                        
seq2  --------------------------------------------------  47

seq1  GCTTTATGCTGATGGCTCTCACAAACCAAAACACACACACACACACATTG  346
                                                        
seq2  --------------------------------------------------  47

seq1  TGGCAAGTGAATGCATGCACACACATGTAAAATAAATATTAAAAGGCAAA  396
                                                        
seq2  --------------------------------------------------  47

seq1  ATAAACTCTACTCCACTGAACA  418
                            
seq2  ----------------------  47

seq1: chr7_26646365_26647385
seq2: B6Ng01-205H15.g_69_1100

seq1  GAATTCCAAATGCAGATCAAGATGGTCTGGAACTCACAGGGATCTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGCAGATCAAGATGGTCTGGAACTCACAGGGATCTGTTTG  50

seq1  CCTCTGCCTTTTAAATGATAGGATCAGAGGTGTGTGTCACTAGTCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTTTAAATGATAGGATCAGAGGTGTGTGTCACTAGTCCACAT  100

seq1  CCCTTCTTGGGTTCCTCCTTAACTCTCAAGGTAAGCAGCTGGACCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTGGGTTCCTCCTTAACTCTCAAGGTAAGCAGCTGGACCAAGAA  150

seq1  GAGGTCATCTTGAGGCTCTTAGTCCCACCTGGGTCTTCCTTGAGCAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATCTTGAGGCTCTTAGTCCCACCTGGGTCTTCCTTGAGCAGTCC  200

seq1  CTGAATCTCATCATGCTCTTTAAATATTCATTTATTTTTGTCTTATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTCATCATGCTCTTTAAATATTCATTTATTTTTGTCTTATATGT  250

seq1  ATGAATCTGTGTATTTGCCTGAATCTTTGTGGACCACATGCATGCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTGTGTATTTGCCTGAATCTTTGTGGACCACATGCATGCCTGTT  300

seq1  TCCTGCAAAGGTCAGAAGAGGGTGGTAGATCCCCTGGAACTGGAGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAAGGTCAGAAGAGGGTGGTAGATCCCCTGGAACTGGAGTTACA  350

seq1  GCTGGTTGTGAGCTCTGTGTGGGTGCTGGCAGCCCAACCCAGGTCCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGTGAGCTCTGTGTGGGTGCTGGCAGCCCAACCCAGGTCCATGG  400

seq1  AACAGGTTCTCTTAACCACTGAGCCATCTCTCTAGCCCAGCCCCCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTCTCTTAACCACTGAGCCATCTCTCTAGCCCAGCCCCCATTCC  450

seq1  TGCCCTTTAATGCCAGGGACCGAGGAAAGCAAGGAAAGTCCCTCACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTAATGCCAGGGACCGAGGAAAGCAAGGAAAGTCCCTCACTACA  500

seq1  AAAAAAAAAACAGACAACAGACATCCTTGTGCACAGAGTGCAGTCCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAGACAACAGACATCCTTGTGCACAGAGTGCAGTCCTAGG  550

seq1  TTATAAATAAGGAAACAGGAGCAGAGAGTTTAGGATGCTTGTCCAAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAAGGAAACAGGAGCAGAGAGTTTAGGATGCTTGTCCAAGGTC  600

seq1  CCACAGTTCATCAACAGTTGGTCTAGCTTGTAGGTTGAGGCCCTTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTCATCAACAGTTGGTCTAGCTTGTAGGTTGAGGCCCTTTTGGG  650

seq1  GTCTAACCAATGCAATAAACCAATCCAAGATCAATTAAAACTAAAAAAGA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCTAACCAATGCAATAAACCAATCCAAGATCAATT-AAACTAAAAAAGA  699

seq1  GGGTGCTGGAAAGATGGCTCATGGGGTTGGAGCTATGGCTCAGTGGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGAAAGATGGCTCATGGGGTTGGAGCTATGGCTCAGTGGTTAA  749

seq1  GAGCACTGAATGCTCTCTAGAAGACCTGGGTTCAACTACGAGCACCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGAATGCTCTCTAGAAGACCTGGGTTCAACTACGAGCACCCATA  799

seq1  TGGCAGCTCACAA-TTGTC-TGTAACTCTAA-GATCTGATGCCCTCACCC  847
      ||||||||||||| ||||| ||||||||||| ||||||||||||||||||
seq2  TGGCAGCTCACAATTTGTCTTGTAACTCTAATGATCTGATGCCCTCACCC  849

seq1  -TGACATAC-TTGCAGGCAAAACAACAATGCACATT-AAAAAAAGGTAAA  894
       |||||||| |||||||| ||||||||||||||||| |||||||||||||
seq2  TTGACATACTTTGCAGGC-AAACAACAATGCACATTAAAAAAAAGGTAAA  898

seq1  AAAAAAAA-TAGCTTTTTTGGAGGGCAGTTAC-TGGGTGGGGTTACCAGT  942
      |||||||| ||||||||||||||||||||||| ||||||||||||| |||
seq2  AAAAAAAATTAGCTTTTTTGGAGGGCAGTTACTTGGGTGGGGTTACAAGT  948

seq1  TCCAAGGAATGA-TGCCATGG-AAATTGTCATGCAGATGGTGGTGG--TT  988
      |||||||||||| |||| ||| |||||||| ||||||||||||| |  | 
seq2  TCCAAGGAATGATTGCCTTGGAAAATTGTCTTGCAGATGGTGGTTGCTTG  998

seq1  GGGACTCAAAGTGTAAGG-ATCAGAAAAACCACT  1021
      ||||||||| ||||| || |  ||||||||||||
seq2  GGGACTCAATGTGTATGGTACTAGAAAAACCACT  1032