BAC Information

Click to search

BAC

Clone NameB6Ng01-206E02
Chromosome7 (Build37)
Map Location 38,046,219 - 38,196,478
singlet/doubletdoublet
Overlap genenone
Upstream geneTshz3, LOC100043874
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206E02.bB6Ng01-206E02.g
ACCGA025719GA025720
length1,1751,029
definitionB6Ng01-206E02.b B6Ng01-206E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,195,315 - 38,196,478)(38,046,219 - 38,047,239)
sequence
gaattcactctactaatagatttttcttacattaaaatatctttttattt
aaagaattaaccctacttgattaaggtattttattcagtagtgaagattg
aaccttgggcctcctacttgttaggaaaatgctctgcaagagccaagtgc
ccagcacaccacagggaaattctaggcaagctcctactgagccacacccc
cagcccctcactgggggattctaggcaggggctctaccactgagccacac
ccccagtccctcactggggaattctaggcaggggctctactactgagtca
caccccagtccctctctggggggttctagttccatgtccttttttcttta
aatttggagacagaaccaatggatacattgccccaatctgactttgaact
caggctatagcccaaacagtcctgaaatgtatggccatcctacctcagct
tctcactacttggacctggaccactagtcccaaggcagcccttctatgct
gagtatactgtcacctatcaacttattctagtattagctaggatttattc
tatttctgctccactgttagaagcttggttttgaaacatctctggcaggt
tttgatatcaatgctactcctttaaaaggtagttaggggattttttcccc
ccacaaaactcttgagcagtcaaacagaacttggatcacgtgtctttgga
aggattcatagaatcgaggtgtggaaacgtgatggttgtccttggttaac
cgtgcactatggaggttataccttggtgcattcttcacttagcttatcag
tgactctcactcttttcttcatggtaattggctaacttaaaatctctctg
tgtctctgtctctgtctctgtctctgtctctctctctctctctctgtccc
ttcctctccaccaccaccccaccccgggcccccagagtcaattttcttct
tttggcaaaaggtatttcatttagtttcattgaaaattattttacacaca
attagacacacattcctccttcttaacttttttatttttatgtttatggt
gttctgcctgcatgcatgccttgtgcacagttgtcagagatgttgttcac
atccccttgggactggtgtttacaagcagtggtgcaccactcatgttagc
acctgggaattcaacctgggtcctt

gaattctccatggatctcctgactgaggtctgtttagactcttggattct
ctctgtgatagggagctccccacctcccaggcagccaggactaatttaag
atgccctgttgccaaatcttgacttaatagaattggagccgtttcctccc
ctgggtaggacagaggcatagctgtttgagattaggaagtctttggtttt
tcatggtgtgcttggaacccaaaggccagtgtatagcaataccagacaaa
aagggagtgggagagaataagacacagcttaagcatctttcaggcccaaa
gctatttgacaaatatcactttattgcccatgttaaggaacttgtgagct
aagaccaaaattatcattaaaaagataaactgtagattctagagaaagtc
caagttcaatgacctgctccaaggttggcagaactggtaagaacggagct
tagatggcattgggtcctgggagtcaccaagatctgtatggagtcaggtg
gtgtgtcacaggcttttaatctcagcactcaagaggcagaagcaggtgta
cctctacagcctggtctacacagccagtaggctccagaccagctagggct
acatagtcaacccctgtctcaaatgcgtccagtgtctgagaagccattgt
cacaacagctggtaaaatgtttggtcactatcacaaaattgctacagtaa
tgaactacaccccaccccacctcccaattttgggggagcatcgtcccatt
ctctacaagccatcttttgtcaggggcagtcatgttctttgaacacctga
aagtgtgttagctttgtgtactagcttctcagtctccttcttcaagaaaa
gagttcagccaagcagtggtggcacgcgcctttaatcccagcacttgggg
aggcagaggcaggtggatttattgatttcgaggtcagcctggtctacaaa
gtgagtttccagggacagccaggctacacagagaaaccttgttctcgaaa
tcaaaaaaagaaaaatggaaaagaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38195315_38196478
seq2: B6Ng01-206E02.b_31_1205 (reverse)

seq1  AAGGACCCAGGTTTGATTCCCA-GTGCCTACATG-GTGGTGCACCACTGC  48
      |||||||||||||  ||||||| ||||  ||||| |||||||||||||||
seq2  AAGGACCCAGGTTGAATTCCCAGGTGCTAACATGAGTGGTGCACCACTGC  50

seq1  TTGT-AACACCAGTCCC-AGGGGATGTG-ACACCTTCTTCTGGCCACTTG  95
      |||| |||||||||||| |||||||||| ||| | || |||| | || ||
seq2  TTGTAAACACCAGTCCCAAGGGGATGTGAACAACATC-TCTGACAAC-TG  98

seq1  TGCAC-AGGCATGCATGCAGGCAGAACACCCATAAACAT-AAAATAAAAA  143
      ||||| |||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGCACAAGGCATGCATGCAGGCAGAACA-CCATAAACATAAAAATAAAAA  147

seq1  GTTTAAG-AGGAGG-ATGTGTTGTCTAATTGTGTGT-AAATAATTTTCAA  190
        ||||| |||||| ||||| ||||||||||||||| |||||||||||||
seq2  AGTTAAGAAGGAGGAATGTG-TGTCTAATTGTGTGTAAAATAATTTTCAA  196

seq1  TG-AACTAAATG-AATACCTTTTTGCCAAAGA--GAAATTGACTCTGGGG  236
      || ||||||||| ||||||||||  | |||||   |||||||||||||||
seq2  TGAAACTAAATGAAATACCTTTTGCCAAAAGAAGAAAATTGACTCTGGGG  246

seq1  G-CCGGGGTGGGGTGGTGGTGGAGAGGAAGGGACAGAGAGAGAGAGAGAG  285
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGTGGGGTGGTGGTGGAGAGGAAGGGACAGAGAGAGAGAGAGAG  296

seq1  AGACAGAGACAGAGACAGAGACAGAGACACAGAGAGATTTTAAGTTAGCC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGACAGAGACAGAGACACAGAGAGATTTTAAGTTAGCC  346

seq1  AATTACCATGAAGAAAAGAGTGAGAGTCACTGATAAGCTAAGTGAAGAAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCATGAAGAAAAGAGTGAGAGTCACTGATAAGCTAAGTGAAGAAT  396

seq1  GCACCAAGGTATAACCTCCATAGTGCACGGTTAACCAAGGACAACCATCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGGTATAACCTCCATAGTGCACGGTTAACCAAGGACAACCATCA  446

seq1  CGTTTCCACACCTCGATTCTATGAATCCTTCCAAAGACACGTGATCCAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCACACCTCGATTCTATGAATCCTTCCAAAGACACGTGATCCAAG  496

seq1  TTCTGTTTGACTGCTCAAGAGTTTTGTGGGGGGAAAAAATCCCCTAACTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGACTGCTCAAGAGTTTTGTGGGGGGAAAAAATCCCCTAACTA  546

seq1  CCTTTTAAAGGAGTAGCATTGATATCAAAACCTGCCAGAGATGTTTCAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAGGAGTAGCATTGATATCAAAACCTGCCAGAGATGTTTCAAA  596

seq1  ACCAAGCTTCTAACAGTGGAGCAGAAATAGAATAAATCCTAGCTAATACT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTCTAACAGTGGAGCAGAAATAGAATAAATCCTAGCTAATACT  646

seq1  AGAATAAGTTGATAGGTGACAGTATACTCAGCATAGAAGGGCTGCCTTGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGTTGATAGGTGACAGTATACTCAGCATAGAAGGGCTGCCTTGG  696

seq1  GACTAGTGGTCCAGGTCCAAGTAGTGAGAAGCTGAGGTAGGATGGCCATA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGGTCCAGGTCCAAGTAGTGAGAAGCTGAGGTAGGATGGCCATA  746

seq1  CATTTCAGGACTGTTTGGGCTATAGCCTGAGTTCAAAGTCAGATTGGGGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGGACTGTTTGGGCTATAGCCTGAGTTCAAAGTCAGATTGGGGC  796

seq1  AATGTATCCATTGGTTCTGTCTCCAAATTTAAAGAAAAAAGGACATGGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCATTGGTTCTGTCTCCAAATTTAAAGAAAAAAGGACATGGAA  846

seq1  CTAGAACCCCCCAGAGAGGGACTGGGGTGTGACTCAGTAGTAGAGCCCCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCCCCCAGAGAGGGACTGGGGTGTGACTCAGTAGTAGAGCCCCT  896

seq1  GCCTAGAATTCCCCAGTGAGGGACTGGGGGTGTGGCTCAGTGGTAGAGCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAATTCCCCAGTGAGGGACTGGGGGTGTGGCTCAGTGGTAGAGCC  946

seq1  CCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTAGGAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTAGGAGC  996

seq1  TTGCCTAGAATTTCCCTGTGGTGTGCTGGGCACTTGGCTCTTGCAGAGCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGAATTTCCCTGTGGTGTGCTGGGCACTTGGCTCTTGCAGAGCA  1046

seq1  TTTTCCTAACAAGTAGGAGGCCCAAGGTTCAATCTTCACTACTGAATAAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAACAAGTAGGAGGCCCAAGGTTCAATCTTCACTACTGAATAAA  1096

seq1  ATACCTTAATCAAGTAGGGTTAATTCTTTAAATAAAAAGATATTTTAATG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAATCAAGTAGGGTTAATTCTTTAAATAAAAAGATATTTTAATG  1146

seq1  TAAGAAAAATCTATTAGTAGAGTGAATTC  1164
      |||||||||||||||||||||||||||||
seq2  TAAGAAAAATCTATTAGTAGAGTGAATTC  1175


seq1: chr7_38046219_38047239
seq2: B6Ng01-206E02.g_67_1095

seq1  GAATTCTCCATGGATCTCCTGACTGAGGTCTGTTTAGACTCTTGGATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGATCTCCTGACTGAGGTCTGTTTAGACTCTTGGATTCT  50

seq1  CTCTGTGATAGGGAGCTCCCCACCTCCCAGGCAGCCAGGACTAATTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATAGGGAGCTCCCCACCTCCCAGGCAGCCAGGACTAATTTAAG  100

seq1  ATGCCCTGTTGCCAAATCTTGACTTAATAGAATTGGAGCCGTTTCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGTTGCCAAATCTTGACTTAATAGAATTGGAGCCGTTTCCTCCC  150

seq1  CTGGGTAGGACAGAGGCATAGCTGTTTGAGATTAGGAAGTCTTTGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGGACAGAGGCATAGCTGTTTGAGATTAGGAAGTCTTTGGTTTT  200

seq1  TCATGGTGTGCTTGGAACCCAAAGGCCAGTGTATAGCAATACCAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTGCTTGGAACCCAAAGGCCAGTGTATAGCAATACCAGACAAA  250

seq1  AAGGGAGTGGGAGAGAATAAGACACAGCTTAAGCATCTTTCAGGCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTGGGAGAGAATAAGACACAGCTTAAGCATCTTTCAGGCCCAAA  300

seq1  GCTATTTGACAAATATCACTTTATTGCCCATGTTAAGGAACTTGTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGACAAATATCACTTTATTGCCCATGTTAAGGAACTTGTGAGCT  350

seq1  AAGACCAAAATTATCATTAAAAAGATAAACTGTAGATTCTAGAGAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAAATTATCATTAAAAAGATAAACTGTAGATTCTAGAGAAAGTC  400

seq1  CAAGTTCAATGACCTGCTCCAAGGTTGGCAGAACTGGTAAGAACGGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAATGACCTGCTCCAAGGTTGGCAGAACTGGTAAGAACGGAGCT  450

seq1  TAGATGGCATTGGGTCCTGGGAGTCACCAAGATCTGTATGGAGTCAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCATTGGGTCCTGGGAGTCACCAAGATCTGTATGGAGTCAGGTG  500

seq1  GTGTGTCACAGGCTTTTAATCTCAGCACTCAAGAGGCAGAAGCAGGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACAGGCTTTTAATCTCAGCACTCAAGAGGCAGAAGCAGGTGTA  550

seq1  CCTCTACAGCCTGGTCTACACAGCCAGTAGGCTCCAGACCAGCTAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAGCCTGGTCTACACAGCCAGTAGGCTCCAGACCAGCTAGGGCT  600

seq1  ACATAGTCAACCCCTGTCTCAAATGCGTCCAGTGTCTGAGAAGCCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCAACCCCTGTCTCAAATGCGTCCAGTGTCTGAGAAGCCATTGT  650

seq1  CACAACAGCTGGTAAAATGTTTGGTCACTATCACAAAATTGCTACAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGCTGGTAAAATGTTTGGTCACTATCACAAAATTGCTACAGTAA  700

seq1  TGAACTACACCCCACCCCACCTCCCAATTTTGGGGGAGCATCGTCCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACACCCCACCCCACCTCCCAATTTTGGGGGAGCATCGTCCCATT  750

seq1  CTCTACAAGCCATCTTTTGTCAGGGGCAGTCATGTTCTTTGAACACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAAGCCATCTTTTGTCAGGGGCAGTCATGTTCTTTGAACACCTGA  800

seq1  AAGTGTGTTAGCTTTGTGTACTAGCTTCTCAGTCTCCTTCTTCAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTAGCTTTGTGTACTAGCTTCTCAGTCTCCTTCTTCAAGAAAA  850

seq1  GAGTTCAGCCAAGCAGTGGTGGCACGCGCCTTTAATCCCAGCACTT-GGG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTTCAGCCAAGCAGTGGTGGCACGCGCCTTTAATCCCAGCACTTGGGG  900

seq1  AGGCAGAGGCAGGTGGATTTA-TGATTTCGAGGTCAGCCTGGTCTACAAA  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGTGGATTTATTGATTTCGAGGTCAGCCTGGTCTACAAA  950

seq1  GTGAG-TTCCA-GGACAGCCAGGGCTACACAGAGAAACCCTG-TCTCGAA  995
      ||||| ||||| ||||||||| ||||||||||||||||| || ||||| |
seq2  GTGAGTTTCCAGGGACAGCCA-GGCTACACAGAGAAACCTTGTTCTCG-A  998

seq1  AATCAAAAAAAAAAA----GAAAA-AAGGAA  1021
      ||||||||||| |||    ||||| ||||||
seq2  AATCAAAAAAAGAAAAATGGAAAAGAAGGAA  1029


| Home | SequenceCutter | Blast | Download |