BAC Information

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BAC

Clone NameB6Ng01-206H05
Chromosome7 (Build37)
Map Location 12,845,403 - 12,846,538
singlet/doubletsinglet
Overlap geneV1rg9
Upstream geneLOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
Downstream geneV1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206H05.bB6Ng01-206H05.g
ACCGA025861GA025862
length9971,138
definitionB6Ng01-206H05.b B6Ng01-206H05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaggtgtgactggtgtgtctttccttcagtatctgctctacac
tctttctccatatttattcccgtgagtattttgtattttgttcccctttc
ttttctttcttttctttctttttcttttctttctttctttttcctttctt
ttctttcttttccttttcttttcttctttttattttctcttctttttttc
tttttcttttttttttgagacagggtttctctgtgtagccctgactgtcc
tggaactcactctgtagaacagactgacctcaaactcagaaatctgcttg
cctctgtctcccaagtgctgagattaaaggtatgtgccaccactgcccag
atttttcttccttttaagtaggaccaaaactcccacactttagtactcct
tcttcttgatcttcatgtggtctgtgaattgtatcttgggtattctgacc
ttctgggctaatatccatttatcagtgagtgcataccaaatgtgttcttt
tgtgaatgggatacctcacttaggataatattttctagtcccatcaattt
gtctaggaatttcatgaattcataatttttaatagctgagtagtacttca
ttgggtaaacatacacattttctgtatccatttctctgttgaaggacatc
tagattttttccaggttctggctattataaataaggacactatgaacata
gtggagcacgtgtccttgttatatgttggagagtcttttgggtatatgct
cagctgggtcctcaggtaattctatgtccaatatcctgaagaaccacaag
attgatttccagagtggttgtaccagcttgcaatcccaccagcaatggag
gagtattcccctttcttcacatcctcaccatctgctgtcaacctgagatt
ttgatcttagccattctgactgatatgaggtgaaatctcagggttgtttt
gatttgcatttccctgatgactaaggatgtggacatttctttagtgc
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgactgtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccatttagatt
catagatctgcctgcctctgtgttttgagtcataccattaatgtgtacac
catgacatccattaaaaaatttaaactttagaaaacatattctatatttt
aattgcaataatatattaaaaattcttttttttcagtgagagagctatac
aaataaagtaatatcatgaatgttttattcaagataacttcatgaaacag
tgtacacttaatttccagggtctattgactataataaattgatttatctt
ttcaataggcatgaaaatgacttctataaacttgccaatgggaatattcc
tcttttcccagattgtaatgggaatctttggcaattcctcaatactattt
tattatgtcattttcatattcagtgggaaacatttaatgcctaaagacat
gatcatagagcacttgactttatccaactgcttgtctctaatctcaaaag
gcattccacagacattgtctgattttggatttaaaaactttctggatgat
attggatgcaaagtgataatgtatatttaccgagtaacaagggggatgtc
cctgtatgcaatgtgcctactgggttgtttccaagcaatcacaatcagtc
ccagcaactccagatggattatgcttaaacacagagccacaaagtatatt
gggttcttcctgtttagtcagttggcttgtggatttgcttctaaacatca
tgacgctagtaaaagtgacagtcccacttacagcaaaatgtgacaaaaca
cgatagttatgggtactgctcatggtggcttcaagcatcttggcactgca
ctgtatatgtttctaactctgcttctctgtgaatgcctgtgtctaagtct
cattgactgtgtcaggtgtctcttatgatgaatatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12845403_12846538
seq2: B6Ng01-206H05.g_69_1206 (reverse)

seq1  AGGATATTCATCAT-AGAGACACTTGA-GCAGGCCATGAGACTTAGACAC  48
      |||||||||||||| |||||||| |||  ||| | |||||||||||||||
seq2  AGGATATTCATCATAAGAGACACCTGACACAGTCAATGAGACTTAGACAC  50

seq1  AGGCCATCAC--AGAAGCAGAGTAAG-AACATATACAGTGCAGTTGCCAG  95
      ||||  ||||  ||||||||||| || |||||||||||||||| ||||| 
seq2  AGGCATTCACAGAGAAGCAGAGTTAGAAACATATACAGTGCAG-TGCCAA  99

seq1  ATTGCTTGGAGCAAACCATGAGCAGTACCCATAACTATTCGTG-TTTGTC  144
        |||||| |||  ||||||||||||||||||||||| ||||| ||||||
seq2  GATGCTTGAAGC-CACCATGAGCAGTACCCATAACTA-TCGTGTTTTGTC  147

seq1  ACATTTTTGCTGTAAGTGGGGACTGTCACTTTTACTAGCGTCATGATGTT  194
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACA-TTTTGCTGTAAGT-GGGACTGTCACTTTTACTAGCGTCATGATGTT  195

seq1  TAGAAGCAAATTCACAAGCCAACTGACTAAACAGGAAGAA-CCAATATAC  243
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TAGAAGCAAATCCACAAGCCAACTGACTAAACAGGAAGAACCCAATATAC  245

seq1  TTTGTGGCTCTGTGTTTAAGCATAATCCATCTGGAGTTGCTGGGACTGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCTCTGTGTTTAAGCATAATCCATCTGGAGTTGCTGGGACTGAT  295

seq1  TGTGATTGCTTGGAAACAACCCAGTAGGCACATTGCATACAGGGACATCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGCTTGGAAACAACCCAGTAGGCACATTGCATACAGGGACATCC  345

seq1  CCCTTGTTACTCGGTAAATATACATTATCACTTTGCATCCAATATCATCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTACTCGGTAAATATACATTATCACTTTGCATCCAATATCATCC  395

seq1  AGAAAGTTTTTAAATCCAAAATCAGACAATGTCTGTGGAATGCCTTTTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTTTAAATCCAAAATCAGACAATGTCTGTGGAATGCCTTTTGA  445

seq1  GATTAGAGACAAGCAGTTGGATAAAGTCAAGTGCTCTATGATCATGTCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGACAAGCAGTTGGATAAAGTCAAGTGCTCTATGATCATGTCTT  495

seq1  TAGGCATTAAATGTTTCCCACTGAATATGAAAATGACATAATAAAATAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTAAATGTTTCCCACTGAATATGAAAATGACATAATAAAATAGT  545

seq1  ATTGAGGAATTGCCAAAGATTCCCATTACAATCTGGGAAAAGAGGAATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAATTGCCAAAGATTCCCATTACAATCTGGGAAAAGAGGAATAT  595

seq1  TCCCATTGGCAAGTTTATAGAAGTCATTTTCATGCCTATTGAAAAGATAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGGCAAGTTTATAGAAGTCATTTTCATGCCTATTGAAAAGATAA  645

seq1  ATCAATTTATTATAGTCAATAGACCCTGGAAATTAAGTGTACACTGTTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTATTATAGTCAATAGACCCTGGAAATTAAGTGTACACTGTTTC  695

seq1  ATGAAGTTATCTTGAATAAAACATTCATGATATTACTTTATTTGTATAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTATCTTGAATAAAACATTCATGATATTACTTTATTTGTATAGC  745

seq1  TCTCTCACTGAAAAAAAAGAATTTTTAATATATTATTGCAATTAAAATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTGAAAAAAAAGAATTTTTAATATATTATTGCAATTAAAATAT  795

seq1  AGAATATGTTTTCTAAAGTTTAAATTTTTTAATGGATGTCATGGTGTACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTTTTCTAAAGTTTAAATTTTTTAATGGATGTCATGGTGTACA  845

seq1  CATTAATGGTATGACTCAAAACACAGAGGCAGGCAGATCTATGAATCTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGGTATGACTCAAAACACAGAGGCAGGCAGATCTATGAATCTAA  895

seq1  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  945

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACAGTCAATAAGACAAAAAGACCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACAGTCAATAAGACAAAAAGACCAC  995

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  1045

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  1095

seq1  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1138