BAC Information

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BAC

Clone NameB6Ng01-206H23
Chromosome7 (Build37)
Map Location 90,478,530 - 90,614,509
singlet/doubletdoublet
Overlap geneEG666160
Upstream geneAdamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik
Downstream geneTmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206H23.bB6Ng01-206H23.g
ACCGA025897GA025898
length1,123583
definitionB6Ng01-206H23.b B6Ng01-206H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,478,530 - 90,479,645)(90,613,927 - 90,614,509)
sequence
gaattctattctgcccagtaacctgaaatgaattattgatagatgctttc
agctctgtgtcctctcagatatttcaaagtcagtgttagtcagggcattt
tctcattcagcctttactgaggtcaagatttgtgaagcagtgattttccg
gataagggttagggggaggaacccccgtgccctagaaagtgtggagctgc
acataattggcccctctctaacccagttctctgaaaggtatcagcaacct
ccacatggagaagtaggagtgctggtatctcaaagcaggcagagctccac
accaggtctgggaagggggcacatggtaaccagtgcttctataattctga
gaaataccttacatttaagcttatgtttttctgttatctgagtcttggaa
caagtctgtcaaggatagcaggggaaaatgagatttttgatttgctatga
ataaaaggagaaagctgccaccaaggattgcagggttcttccccttttgc
ttgcaccccacccattttgtgttctagaatagtgttccgatttttataac
tggtcttgacaataagacggttctgaaaaggcaggcttttttctcttaat
gactcagattttaatgttattctgctgtggcaaactgtgcattaggcact
ccttagcaaaataattagtgcattattaaagtattcctttgaagtgcttt
aagctgactgatggctaaagaaaaatagcataataaaatatactggttaa
atatgttataaaataataactcttggaaaaccctctgaaggaaaactatt
tgggggggtcatgaaaatatttaacatccattatttaaaactatgagaaa
aacttccctaattcaatcttttgcaaaggaagctcagattaatcattgtt
taaacattcgtatgtagatgcagtttcctgtacacattatcatggttgtc
agttttccctataatacttaattacactagtgatattttataggatgttg
tataggttcacgatattactttcatatgtggagttttttcattcatatca
ttccaatataatccttggtcttgttaatgaatcatggggctctcactaat
ttctctgtccatagcgtatatgt
gaattcatctccgaagagcctgtaaacttgacaagctcttgtcaaaagga
aagttagtaaaggcttcataaagcagctagatggtggggatggaggtcct
ctctgcccgcagaacctctggagaagggatgggacactgatacgctgctt
ttactcttctgtgaaaatatttatactttcagggttgcttgagtctagga
agtatcagtctttattgctagttgagctatctagaatacttccttggggt
tagattttaacactttgtttttttttttttttttaaaataagagatcacc
atagagactcccaacattacctactctggattatatctataaacagcctt
ttaaagccttttttcctatgcccatctcttttcttccttgtgatatctat
agctttgttttattattcctaggtgagcttcttggacaagatgtgtaata
tacttataagttacagtcattagtgaagtgatttaagaccatgaattttc
ctctgacaacagctttgtactattgattctaatgaagttttaatggtcgg
tcttctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_90478530_90479645
seq2: B6Ng01-206H23.b_48_1170

seq1  GAATTCTATTCTGCCCAGTAACCTGAAATGAATTATTGATAGATGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCTGCCCAGTAACCTGAAATGAATTATTGATAGATGCTTTC  50

seq1  AGCTCTGTGTCCTCTCAGATATTTCAAAGTCAGTGTTAGTCAGGGCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGTCCTCTCAGATATTTCAAAGTCAGTGTTAGTCAGGGCATTT  100

seq1  TCTCATTCAGCCTTTACTGAGGTCAAGATTTGTGAAGCAGTGATTTTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCAGCCTTTACTGAGGTCAAGATTTGTGAAGCAGTGATTTTCCG  150

seq1  GATAAGGGTTAGGGGGAGGAACCCCCGTGCCCTAGAAAGTGTGGAGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGGTTAGGGGGAGGAACCCCCGTGCCCTAGAAAGTGTGGAGCTGC  200

seq1  ACATAATTGGCCCCTCTCTAACCCAGTTCTCTGAAAGGTATCAGCAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTGGCCCCTCTCTAACCCAGTTCTCTGAAAGGTATCAGCAACCT  250

seq1  CCACATGGAGAAGTAGGAGTGCTGGTATCTCAAAGCAGGCAGAGCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGAGAAGTAGGAGTGCTGGTATCTCAAAGCAGGCAGAGCTCCAC  300

seq1  ACCAGGTCTGGGAAGGGGGCACATGGTAACCAGTGCTTCTATAATTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCTGGGAAGGGGGCACATGGTAACCAGTGCTTCTATAATTCTGA  350

seq1  GAAATACCTTACATTTAAGCTTATGTTTTTCTGTTATCTGAGTCTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCTTACATTTAAGCTTATGTTTTTCTGTTATCTGAGTCTTGGAA  400

seq1  CAAGTCTGTCAAGGATAGCAGGGGAAAATGAGATTTTTGATTTGCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGTCAAGGATAGCAGGGGAAAATGAGATTTTTGATTTGCTATGA  450

seq1  ATAAAAGGAGAAAGCTGCCACCAAGGATTGCAGGGTTCTTCCCCTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAGAAAGCTGCCACCAAGGATTGCAGGGTTCTTCCCCTTTTGC  500

seq1  TTGCACCCCACCCATTTTGTGTTCTAGAATAGTGTTCCGATTTTTATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCCACCCATTTTGTGTTCTAGAATAGTGTTCCGATTTTTATAAC  550

seq1  TGGTCTTGACAATAAGACGGTTCTGAAAAGGCAGGCTTTTTTCTCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGACAATAAGACGGTTCTGAAAAGGCAGGCTTTTTTCTCTTAAT  600

seq1  GACTCAGATTTTAATGTTATTCTGCTGTGGCAAACTGTGCATTAGGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGATTTTAATGTTATTCTGCTGTGGCAAACTGTGCATTAGGCACT  650

seq1  CCTTAGCAAAATAATTAGTGCATTATTAAAGTATTCCTTTGAAGTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAAAATAATTAGTGCATTATTAAAGTATTCCTTTGAAGTGCTTT  700

seq1  AAGCTGACTGATGGCTAAAGAAAAATAGCATAATAAAATATACTGGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACTGATGGCTAAAGAAAAATAGCATAATAAAATATACTGGTTAA  750

seq1  ATATGTTATAAAATAATAACTCTTGGAAAA-CCTCTGAAGGAAAACTATT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATGTTATAAAATAATAACTCTTGGAAAACCCTCTGAAGGAAAACTATT  800

seq1  T-GGGGGGTCATGAAAATATTTAACATCCATTATTTAAAACTATGAGAAA  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGTCATGAAAATATTTAACATCCATTATTTAAAACTATGAGAAA  850

seq1  AACTT-CCTAATTCAATCTTTTGCAAA-GAAGCTCAGATTAATCATTG-T  895
      ||||| ||||||||||||||||||||| |||||||||||||||||||| |
seq2  AACTTCCCTAATTCAATCTTTTGCAAAGGAAGCTCAGATTAATCATTGTT  900

seq1  TAAACATTCGTATGTAGATGCAG-TTCCTGTACACATTATCATGGTGTTC  944
      ||||||||||||||||||||||| ||||||||||||||||||||||  ||
seq2  TAAACATTCGTATGTAGATGCAGTTTCCTGTACACATTATCATGGTTGTC  950

seq1  AGTTTT-CCTATAATACTT-ATTACACTAGTGATATTTTATAGGATGTTG  992
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTTTCCCTATAATACTTAATTACACTAGTGATATTTTATAGGATGTTG  1000

seq1  TATAGGTTCACAATTATTATTTTAATATGT-GAGTTTTTTCATTCATATC  1041
      ||||||||||| | ||||| ||| |||||| |||||||||||||||||||
seq2  TATAGGTTCACGA-TATTACTTTCATATGTGGAGTTTTTTCATTCATATC  1049

seq1  ATTTCCAAATATTAATCCTT-GTCTTGTTAATG-ATCATTGGGCTCTCAC  1089
      |||  | |||| |||||||| |||||||||||| ||||| ||||||||||
seq2  ATT--CCAATA-TAATCCTTGGTCTTGTTAATGAATCATGGGGCTCTCAC  1096

seq1  TAATTTTCTCTGT-CATAGCGAATATGT  1116
      ||| ||||||||| ||||||| ||||||
seq2  TAA-TTTCTCTGTCCATAGCGTATATGT  1123

seq1: chr7_90613927_90614509
seq2: B6Ng01-206H23.g_70_652 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCGACCATTAAAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACCGACCATTAAAACTTC  50

seq1  ATTAGAATCAATAGTACAAAGCTGTTGTCAGAGGAAAATTCATGGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATCAATAGTACAAAGCTGTTGTCAGAGGAAAATTCATGGTCTTA  100

seq1  AATCACTTCACTAATGACTGTAACTTATAAGTATATTACACATCTTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCACTAATGACTGTAACTTATAAGTATATTACACATCTTGTCC  150

seq1  AAGAAGCTCACCTAGGAATAATAAAACAAAGCTATAGATATCACAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTCACCTAGGAATAATAAAACAAAGCTATAGATATCACAAGGAA  200

seq1  GAAAAGAGATGGGCATAGGAAAAAAGGCTTTAAAAGGCTGTTTATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGATGGGCATAGGAAAAAAGGCTTTAAAAGGCTGTTTATAGATA  250

seq1  TAATCCAGAGTAGGTAATGTTGGGAGTCTCTATGGTGATCTCTTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGAGTAGGTAATGTTGGGAGTCTCTATGGTGATCTCTTATTTTA  300

seq1  AAAAAAAAAAAAAAAACAAAGTGTTAAAATCTAACCCCAAGGAAGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACAAAGTGTTAAAATCTAACCCCAAGGAAGTATTC  350

seq1  TAGATAGCTCAACTAGCAATAAAGACTGATACTTCCTAGACTCAAGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCTCAACTAGCAATAAAGACTGATACTTCCTAGACTCAAGCAAC  400

seq1  CCTGAAAGTATAAATATTTTCACAGAAGAGTAAAAGCAGCGTATCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTATAAATATTTTCACAGAAGAGTAAAAGCAGCGTATCAGTGT  450

seq1  CCCATCCCTTCTCCAGAGGTTCTGCGGGCAGAGAGGACCTCCATCCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCTTCTCCAGAGGTTCTGCGGGCAGAGAGGACCTCCATCCCCAC  500

seq1  CATCTAGCTGCTTTATGAAGCCTTTACTAACTTTCCTTTTGACAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTGCTTTATGAAGCCTTTACTAACTTTCCTTTTGACAAGAGCT  550

seq1  TGTCAAGTTTACAGGCTCTTCGGAGATGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  TGTCAAGTTTACAGGCTCTTCGGAGATGAATTC  583