BAC Information

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BAC

Clone NameB6Ng01-207C14
Chromosome13 (Build37)7 (Build37)
Map Location 27,339,799 - 27,340,82446,800,931 - 46,801,432
singlet/doubletsingletsinglet
Overlap genePrl3b1
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1
Downstream genePrl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C14.bB6Ng01-207C14.g
ACCGA026389GA026390
length1,072910
definitionB6Ng01-207C14.b B6Ng01-207C14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,339,799 - 27,340,824)(46,800,931 - 46,801,432)
sequence
gaattcaagggcttctggaaggactgaagatcatattcaatagggtaaga
ccactcacttttcatctcctacatggaagtggtgatttgtttacagagaa
gtgaaattttcaatattccatttctgagataaaattttatatttagatag
atagatagatagatagatagatagatagatagataggtagatagatagat
agataatataataatacatatgtagtaattatgtggaaggactggagatc
gtattcaacagggtaagaccactcactttttatctcctacatggaagagg
tgatttgtttaagaagtgaaaattttcaatactccatttctgagataaaa
atttatatttaaatcaatgaataaatatgtaataatacaataatacatta
gtaataaatatatattatatcatatataaaattcagtaacagccttgcca
ataaggagttgctgtttataaatccaaccttcttcaggatctttactaag
aatcacacccatcagaactctcaatagaaagtagatgtttctcataggaa
ctcagaaagtagcctcaataggtagaatggatatctccaactaacacaga
aaatctgataacagtcttagaactcctaaactttaacacattcaagatat
gtttggtatgttcaaagatttagaagaatacattatctaaagaaactggc
caaagtttaaaagatggaataaataagatattattgtcccctaaaaacca
taatatttatgatccttaggaatgtgctgagaagttactactcccttttt
actgtcttttgaccaaatacacaaaatactttttcaatgtttcttattct
cccattacttgatattactctcacctggaatatactttcatctggagatc
aattgaccacataagaaaaatatggtattccttattccaaattccattta
agagggcccaatgggctttttaaaataaatttgggctccatatgaattac
aagacctggctgtatacttatacattttgctaaccaattcacaattcaat
ggttaccttggtttcagaagta
gaattctcttcagtaagcagccacttccttgttaaaacatcacattttgt
ggtcactgttcattggacagtagaggcagcaatataaacatagcagacag
gctttaagctcccaaacattccccccaatatattttcatatattgttgag
attaaaattatattatttgtcctttatatttcctccctctaaagtctttc
atataatactcactgttctctttcagattttcagatttttaaatttatta
ttgtgaatatacataaagggtattatttactataacaaacaaatgcaccc
cctcacacaaacacatttaaaacctcaatctctataacatatcccaacac
aatttttcaaagacatggaaagaacaattttcaaattcatctggaaagtc
aaaaaaagaaaacagaatagcaaaaacaaaaacgaaaaaaccccaaaaaa
atcaaacaaaaaacaaaacaacaaaacaaacaaacaaacaaaaaacctaa
aacttaataataaaagaatggctgggggaattaccatctctgacctcaag
ctttacatcatagcaatagtgatgaacacttcatgtgttacacttttgtt
acagatacagccacgttgatcaatggaataaaattgaagagggggaatta
ataccagacatttacgggcacttgatctttgacaaagaagccaaacacaa
acaatggaaaaaagaaagtatcttcaacaaatcatgctggcctaactggc
tgacactatgcagaaaaatgataatagacccatatttgtcaccttgagca
aagctcaagttcaagtggatcaaggacctcaacagaatatcagataaact
gaaatagaggaaaatgtgggaaagagccttgaactcattggcatgggggg
ggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27339799_27340824
seq2: B6Ng01-207C14.b_47_1104

seq1  GAATTCAAGGGCTTCTGGAAGGACTGAAGATCATATTCAATAGGGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGCTTCTGGAAGGACTGAAGATCATATTCAATAGGGTAAGA  50

seq1  CCACTCACTTTTCATCTCCTACATGGAAGTGGTGATTTGTTTACAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACTTTTCATCTCCTACATGGAAGTGGTGATTTGTTTACAGAGAA  100

seq1  GTGAAATTTTCAATATTCCATTTCTGAGATAAAATTTTATATTTAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTTCAATATTCCATTTCTGAGATAAAATTTTATATTTAGATAG  150

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGAT  200

seq1  AGATAATATAATAATACATATGTAGTAATTATGTGGAAGGACTGGAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATAATAATACATATGTAGTAATTATGTGGAAGGACTGGAGATC  250

seq1  GTATTCAACAGGGTAAGACCACTCACTTTTTATCTCCTACATGGAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACAGGGTAAGACCACTCACTTTTTATCTCCTACATGGAAGAGG  300

seq1  TGATTTGTTTAAGAAGTGAAAATTTTCAATACTCCATTTCTGAGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTTAAGAAGTGAAAATTTTCAATACTCCATTTCTGAGATAAAA  350

seq1  ATTTATATTTAAATCAATGAATAAATATGTAATAATACAATAATACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTAAATCAATGAATAAATATGTAATAATACAATAATACATTA  400

seq1  GTAATAAATATATATTATATCATATATAAAATTCAGTAACAGCCTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATATATATTATATCATATATAAAATTCAGTAACAGCCTTGCCA  450

seq1  ATAAGGAGTTGCTGTTTATAAATCCAACCTTCTTCAGGATCTTTACTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGTTGCTGTTTATAAATCCAACCTTCTTCAGGATCTTTACTAAG  500

seq1  AATCACACCCATCAGAACTCTCAATAGAAAGTAGATGTTTCTCATAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACCCATCAGAACTCTCAATAGAAAGTAGATGTTTCTCATAGGAA  550

seq1  CTCAGAAAGTAGCCTCAATAGGTAGAATGGATATCTCCAACTAACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGTAGCCTCAATAGGTAGAATGGATATCTCCAACTAACACAGA  600

seq1  AAATCTGATAACAGTCTTAGAACTCCTAAACTTTAACACATTCAAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATAACAGTCTTAGAACTCCTAAACTTTAACACATTCAAGATAT  650

seq1  GTTTGGTATGTTCAAAGATTTAGAAGAATACATTATCTAAAG-AACTGGC  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTTGGTATGTTCAAAGATTTAGAAGAATACATTATCTAAAGAAACTGGC  700

seq1  C-AAGTTT-AAAGATGGAAT-AATAAGATATTATTGTCCC--TAAAACCA  744
      | |||||| ||||||||||| |||||||||||||||||||   |||||||
seq2  CAAAGTTTAAAAGATGGAATAAATAAGATATTATTGTCCCCTAAAAACCA  750

seq1  TAATATTAATGATCCTTAGGAATGTGCTGAGAAGTTACTACT-CCTTTTT  793
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TAATATTTATGATCCTTAGGAATGTGCTGAGAAGTTACTACTCCCTTTTT  800

seq1  ACTGTCCTTTGACCAAATACAC-AAATAC-TTTTCAATG-TTCTTATTCT  840
      |||||| ||||||||||||||| |||||| ||||||||| ||||||||||
seq2  ACTGTCTTTTGACCAAATACACAAAATACTTTTTCAATGTTTCTTATTCT  850

seq1  -CCATTACTTGATA-TACTCTCACAT-GAATATAC-TTCATCT-GAGATC  885
       ||||||||||||| ||||||||| | |||||||| ||||||| ||||||
seq2  CCCATTACTTGATATTACTCTCACCTGGAATATACTTTCATCTGGAGATC  900

seq1  AA-TGA-CACATAAG-AAAATAT-GTATT-CTTATACCATATTCAATTTT  930
      || ||| |||||||| ||||||| ||||| ||||| ||| |||| |||| 
seq2  AATTGACCACATAAGAAAAATATGGTATTCCTTATTCCAAATTCCATTTA  950

seq1  AGA-GGCCTAATG---CTTTTATAATAA--TTTGGCT-CATATGAATTAC  973
      ||| |||| ||||    ||||| |||||  || |||| ||||||||||||
seq2  AGAGGGCCCAATGGGCTTTTTAAAATAAATTTGGGCTCCATATGAATTAC  1000

seq1  AA-ACCT-GCTGTATACTAATACATTTT-CTAAC--AATCACAATTCAAT  1018
      || |||| |||||||||| ||||||||| |||||  | ||||||||||||
seq2  AAGACCTGGCTGTATACTTATACATTTTGCTAACCAATTCACAATTCAAT  1050

seq1  GTTTACCT  1026
      | ||||||
seq2  GGTTACCT  1058

seq1: chr7_46800931_46801432
seq2: B6Ng01-207C14.g_511_978 (reverse)

seq1  TCCCCCCCCCCCCCCCGTGCCTCT----------CACTTT-TGAGATTGT  39
      |||||||||||||||| ||||  |          | ||||   | ||| |
seq2  TCCCCCCCCCCCCCCCATGCCAATGAGTTCAAGGCTCTTTCCCACATTTT  50

seq1  TGTCAAGGCCTTGGAGAGTAGATATTTGGTACTCTGCAGTGTTACTTTAT  89
        || |    ||  ||      ||| || || ||||  | | | ||| ||
seq2  CCTCTA----TTTCAG----TTTATCTGATATTCTGTTGAGGTCCTTGAT  92

seq1  AGGTTTTCTAAATGTGAGCAAAACTCAGTGTCCAGACACTGAAATA---G  136
          |   | ||  |||||    ||||  ||   |||    |||||   |
seq2  CCACT---TGAACTTGAGCTTTGCTCAAGGT---GAC----AAATATGGG  132

seq1  TTCAGCATGCTGTACCTTGATGGTGGAGTAATGGAAACGTCTCAG-GAGT  185
      |  |  ||  | |  ||  || |||                ||||  |||
seq2  TCTATTATCATTTTTCTGCATAGTG----------------TCAGCCAGT  166

seq1  --GTTCTGCAATGCTCTGTCTG-----ACTTTTACTGTTTT-TATTCTTT  227
        |  | || ||| | ||| ||     |||||  || ||||  ||| |||
seq2  TAGGCCAGC-ATGATTTGT-TGAAGATACTTT--CTTTTTTCCATTGTTT  212

seq1  GAGAATTTCATACATTATATTTC---GATCATATTCATCCCCCTCA---C  271
      | |  |  |     || | | ||   |||||      | ||| | |    
seq2  GTGTTTGGC-----TTCTTTGTCAAAGATCA----AGTGCCCGTAAATGT  253

seq1  CTGTTCTTCCCAGATCCACAT-TCCACTTCTATCAGTCCACTCATATATA  320
      ||| | ||   |  ||| | | | || || |||   |||| | ||  |  
seq2  CTGGTATT---AATTCCCCCTCTTCAATTTTAT---TCCATTGATCAA--  295

seq1  TGTGTGTGTGTGTGTGTGTATGTATACAGTATAATATGTATGCATATATG  370
               |||  ||| | |||| |||    ||  ||||  || ||   
seq2  --------CGTGGCTGTATCTGTA-ACA----AAAGTGTA-ACACATGAA  331

seq1  TTGTACATATATATATATATTATATAATATATTTTATATAGAAGGGCTGT  420
       ||| |||   |||   ||| || ||| |  ||      |||   | |  
seq2  GTGTTCATCACTATTGCTATGATGTAA-AGCTTGAGGTCAGAGATGGTAA  380

seq1  TT-------TGTTTGTTTTGTTGGTTGGTTGT-GTTTTTTTGTTTTATGT  462
      ||          || |||| ||  |  ||| | | |||||||||   |||
seq2  TTCCCCCAGCCATTCTTTTATTATTAAGTTTTAGGTTTTTTGTT---TGT  427

seq1  TT-TTTGTTTT-TTGTTTTTTGTTTTTGTTTTTGTTTTTTGG  502
      || |||||||| ||||||| | |||||||||   ||||||||
seq2  TTGTTTGTTTTGTTGTTTTGT-TTTTTGTTTGATTTTTTTGG  468