BAC Information

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BAC

Clone NameB6Ng01-207E06
Chromosome7 (Build37)
Map Location 139,663,320 - 139,788,773
singlet/doubletdoublet
Overlap geneLOC100043683, Oat, Nkx1-2
Upstream geneHmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream gene2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207E06.bB6Ng01-207E06.g
ACCGA026468GA026469
length880653
definitionB6Ng01-207E06.b B6Ng01-207E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,663,320 - 139,664,197)(139,788,123 - 139,788,773)
sequence
gaattcaaaggtgaaatgactccccccagacagaccttgcctggtcttgt
ttcctccaatcaagttactgatggagattttttttaaaaataaaaataaa
aggagacaggccaagctgggacctcctcatgggtcagtctgggagcctcc
ctcgagggcagaaatcagaggtgggttggcctggaaaatggtacctcctg
tcctagcatctaagaaggtccagagctaagaggcgcaagcagcaagagaa
gtgtaccctacctcactcagggtgccaaagccactgagaaggagctcagg
gtacccacatatacctgaacaccgagcacacgggtatgagctacacagat
tcggtgtcaaacgcttgggggtacgtgtagaacaactgcagtgtagtcag
cccaaaatgcaaacctcgatcgttagcttctactttacctgacagccttc
ctcccacggtgctatagcaagcttagggtgaacttggtgccaaaaacgta
ctccttttctcacacaagagccaggttggaatgtagaaacgtaaaaatcc
agcaggcttctaagggtgactcctggtaccactagatagaagaatggggt
ttagattggagcagactggccctgtctctggcatgtgaccttagcagagc
actttttctatatccataagcttcttccatgctcttgggaggatcatttc
ttcaggacagacagaaacacagcccatgtcaccatgtggtacctactaat
accaagtgactagtaatgagaagctgaaatacctttgtgcctcaaggtca
gtgttctctctaggggccggtgtttttgtgtatatacatgcaaacagggt
attctagaggtagtgtgtgtgtgtgtgtgt
gaattcacgagtgatcagtatgatgacgcgggtccccgcttcacagaggg
gcactgaccgccccctcctggtgtgccccttccctccgactgctggtgac
gccaccagagggcgaggagaagtcacctgcagactacaaccacacaagcc
actgaggggtcgaggcgatgtccgtccagaccaggctgttttaaacgttt
ccagcttctggacctcattcttccctttgatttacttcgagggctctgtt
ctttaccgtgtctggctaataagggttcccaggatggagaccagagggag
ccaagatgccctgggcaccagttgctagcaccaaggactgaatctttaaa
ggtggcaggacttatgaagaggaagaaacttttcttcctggcgttggaag
tggctcagcacggaactcccaaatcctgaacaaagctggagcacgaggaa
cccaaagcagatgcagttgttgagtgggctggtttcaagatgcacgacct
tagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagactccattgttg
agtgggctggtttcaagatgcacgaccttagtgtgtgtgtgtgtgtgtgt
gtagacttccatttgtggcccgaagttgtttagcgctgtatcttatattc
acc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139663320_139664197
seq2: B6Ng01-207E06.b_42_921

seq1  GAATTCAAAGGTGAAATGACTCCCCCCAGACAGACCTTGCCTGGTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTGAAATGACTCCCCCCAGACAGACCTTGCCTGGTCTTGT  50

seq1  TTCCTCCAATCAAGTTACTGATGGAGATTTTTTTTAAAAATAAAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAATCAAGTTACTGATGGAGATTTTTTTTAAAAATAAAAATAAA  100

seq1  AGGAGACAGGCCAAGCTGGGACCTCCTCATGGGTCAGTCTGGGAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGGCCAAGCTGGGACCTCCTCATGGGTCAGTCTGGGAGCCTCC  150

seq1  CTCGAGGGCAGAAATCAGAGGTGGGTTGGCCTGGAAAATGGTACCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGCAGAAATCAGAGGTGGGTTGGCCTGGAAAATGGTACCTCCTG  200

seq1  TCCTAGCATCTAAGAAGGTCCAGAGCTAAGAGGCGCAAGCAGCAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCATCTAAGAAGGTCCAGAGCTAAGAGGCGCAAGCAGCAAGAGAA  250

seq1  GTGTACCCTACCTCACTCAGGGTGCCAAAGCCACTGAGAAGGAGCTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCCTACCTCACTCAGGGTGCCAAAGCCACTGAGAAGGAGCTCAGG  300

seq1  GTACCCACATATACCTGAACACCGAGCACACGGGTATGAGCTACACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACATATACCTGAACACCGAGCACACGGGTATGAGCTACACAGAT  350

seq1  TCGGTGTCAAACGCTTGGGGGTACGTGTAGAACAACTGCAGTGTAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTCAAACGCTTGGGGGTACGTGTAGAACAACTGCAGTGTAGTCAG  400

seq1  CCCAAAATGCAAACCTCGATCGTTAGCTTCTACTTTACCTGACAGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATGCAAACCTCGATCGTTAGCTTCTACTTTACCTGACAGCCTTC  450

seq1  CTCCCACGGTGCTATAGCAAGCTTAGGGTGAACTTGGTGCCAAAAACGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGGTGCTATAGCAAGCTTAGGGTGAACTTGGTGCCAAAAACGTA  500

seq1  CTCCTTTTCTCACACAAGAGCCAGGTTGGAATGTAGAAACGTAAAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTCACACAAGAGCCAGGTTGGAATGTAGAAACGTAAAAATCC  550

seq1  AGCAGGCTTCTAAGGGTGACTCCTGGTACCACTAGATAGAAGAATGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCTAAGGGTGACTCCTGGTACCACTAGATAGAAGAATGGGGT  600

seq1  TTAGATTGGAGCAGACTGGCCCTGTCTCTGGCATGTGACCTTAGCAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGGAGCAGACTGGCCCTGTCTCTGGCATGTGACCTTAGCAGAGC  650

seq1  ACTTTTTCTATATCCATAAGCTTCTTCCATGCTCTTGGGAGGATCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTATATCCATAAGCTTCTTCCATGCTCTTGGGAGGATCATTTC  700

seq1  TTCAGGACAGACAGAAACACAGCCCATGTCACCATGTGGTACCTACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAGACAGAAACACAGCCCATGTCACCATGTGGTACCTACTAAT  750

seq1  ACCAAGTGACTAGTAATGAGAAGCTGAAATACCTTTGTGCCTCAAGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGACTAGTAATGAGAAGCTGAAATACCTTTGTGCCTCAAGGTCA  800

seq1  GTGTTCTCTCTA-GGGCCGGTG-TTTTGTGTATATACATGCAAACAGGGT  848
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  GTGTTCTCTCTAGGGGCCGGTGTTTTTGTGTATATACATGCAAACAGGGT  850

seq1  ATTCTAGAGGTAGTGTGTGTGTGTGTGTGT  878
      ||||||||||||||||||||||||||||||
seq2  ATTCTAGAGGTAGTGTGTGTGTGTGTGTGT  880

seq1: chr7_139788123_139788773
seq2: B6Ng01-207E06.g_66_718 (reverse)

seq1  GGTGAATAT-AGGTACAGCGCTGAACAACTTCGGGCCACAAATGG-AGTC  48
      ||||||||| || ||||||||| |||||||||||||||||||||| ||||
seq2  GGTGAATATAAGATACAGCGCTAAACAACTTCGGGCCACAAATGGAAGTC  50

seq1  TACACACACACACACACACACACTAAGGTCGTGCATCTTGAAACCAGCCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACTAAGGTCGTGCATCTTGAAACCAGCCC  100

seq1  ACTCAACAATGGAGTCTACACACACACACACACACACACACACACACACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAATGGAGTCTACACACACACACACACACACACACACACACACA  150

seq1  CTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTT  200

seq1  GGGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTGGGAGTTCCGTGCTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTGGGAGTTCCGTGCTGAG  250

seq1  CCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCTCTTCATAAGTCCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCTCTTCATAAGTCCTGCC  300

seq1  ACCTTTAAAGATTCAGTCCTTGGTGCTAGCAACTGGTGCCCAGGGCATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAAGATTCAGTCCTTGGTGCTAGCAACTGGTGCCCAGGGCATCT  350

seq1  TGGCTCCCTCTGGTCTCCATCCTGGGAACCCTTATTAGCCAGACACGGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTCTGGTCTCCATCCTGGGAACCCTTATTAGCCAGACACGGTA  400

seq1  AAGAACAGAGCCCTCGAAGTAAATCAAAGGGAAGAATGAGGTCCAGAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGAGCCCTCGAAGTAAATCAAAGGGAAGAATGAGGTCCAGAAGC  450

seq1  TGGAAACGTTTAAAACAGCCTGGTCTGGACGGACATCGCCTCGACCCCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACGTTTAAAACAGCCTGGTCTGGACGGACATCGCCTCGACCCCTC  500

seq1  AGTGGCTTGTGTGGTTGTAGTCTGCAGGTGACTTCTCCTCGCCCTCTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGTGTGGTTGTAGTCTGCAGGTGACTTCTCCTCGCCCTCTGGT  550

seq1  GGCGTCACCAGCAGTCGGAGGGAAGGGGCACACCAGGAGGGGGCGGTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCACCAGCAGTCGGAGGGAAGGGGCACACCAGGAGGGGGCGGTCAG  600

seq1  TGCCCCTCTGTGAAGCGGGGACCCGCGTCATCATACTGATCACTCGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCTGTGAAGCGGGGACCCGCGTCATCATACTGATCACTCGTGAA  650

seq1  TTC  651
      |||
seq2  TTC  653