BAC Information

Click to search

BAC

Clone NameB6Ng01-207M13
Chromosome7 (Build37)
Map Location 24,311,359 - 24,312,454
singlet/doubletsinglet
Overlap geneLOC667651
Upstream geneEG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032
Downstream geneLOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207M13.bB6Ng01-207M13.g
ACCGA026839GA026840
length1,0951,146
definitionB6Ng01-207M13.b B6Ng01-207M13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtacatacttcagcatatgtagttgaagaggaaataaaggaa
cggcaatgaagaaagcaagagtctctgagacattttcagagacaagtcag
acaccgggtcaatcagtgggttatgctgaggaaaaagcaacaacttcaca
agtcttacaaagcagcagaaaaggaaggctctatagccatgcagtattca
gatttggcacatttaacttctaaaaggacaagtgttttccctggcaattt
gaatgtttctgttggaaggtttaggttatccacttcccaggtgcttggtg
atgcaacagaagatggagagaatcagaatcagttgtttcaagaacaagct
caagctcttcatcaactttgaaacaggcaagtcaccagctggcttccttt
aaaactgtgagtgaaagaaatacatcagtgcttccaaatggtggaaggaa
aagttgtcccacccaagagggctttggctgtgggaaaatttcatttgttg
ccataagtgaggagagagagaatttttttgtgagctgccagcatgatttc
ctttctgaagacaaagaaaaggctttcagcaaaattcagaaagtaaaatt
caaaaatcccttatctggaggctttgccagaccacctggaggagccatct
tggttcccagacccctcagagtctagtctgtgcaggtgagattatgtcta
cagaagctaacagcttctgggacaggtgaaagccacacggcttctgggtc
agacccctttaaaggctccagacatccgggcaccttccctgctggaggag
aggtgtctgtcccgcctgggagggctttgccagagcacctgggagagcca
tcttggttctggacccttcagagacaactctgcacaggtgagagtgtgga
ctacagaagctaacagcttcttggacaggccctgtttcagccttcatctt
ctgccaggaagcaggtccgaagccagaatatctgtgcacctgctctgcag
agagagctttcctacagagagtatgcctgaccactgaactcagaagaact
gctagtcctcccaggtctgctgatgaggcttaaaagaatcaggga
gaattctccaaagcatccgggcttttatgaaggctacttgctgaacgcta
caaactgacagtaaaaccctattgttgtagccaacacttaaataattcct
tggacataaaaaagttgagctgatgcatacttagattatttacaaagagt
gttcttgatactgtagagcactctgcatgctaacaaagaaaagaatagta
aacatcaatccagctataaactttgttatttgtaatatgacctgcctaaa
agatatggatcacaataattatacaaagctcgtggaagtaaccaaacagt
atctggcctgattgaaggaccatcctatgagatggaacccattcctgaaa
ctgggtggtgaagaagaacctgagataaagtagatcagggccacagggca
acacgaaatactagtgtactgctaaagaaatataccaacaaattgacttc
taatcatattcagctacactcatagatcagcaccttgtttggccatcatc
agaagattccttttgcagcagatagggactaacaatgactatattttata
gccataaaatatgtagagtgagatacttttgaatactcagtcctggatgg
gatgtcttcatcaaatccttttcttcaggagttatagaagtcttttggat
tggagacctaggaagtataagagccaaaggggaaggagggcacaaaagaa
gtaagatcctttaagcacagcatgcacatatacactccaagaaaatgaga
gtttatgtactagaccttcatggctctgtacatgatgagatcctagaact
taaagacatggacacatgcactcaacattgacccagaagctagatgataa
ccacatgttatttaaaaaaaaaagaactttttttttgcaagggggatctc
ccagggggaaacaagtcattcttatgggtaggccccatgcaatcagtaga
tggccaatacaaaatgacttactggcatccttaggttcatttttctcata
tggtattcaggaattcttttactttaaactcatgtgtctattgtgtacat
tatgttcaggtttgccatttttatgatacctgtgtgtgaaacggtgggtt
cgtgtctatacagtttctgacttttagtacattggcctgaatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24311359_24312454
seq2: B6Ng01-207M13.b_46_1140

seq1  GAATTCCAGTACATACTTCAGCATATGTAGTTGAAGAGGAAATAAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACATACTTCAGCATATGTAGTTGAAGAGGAAATAAAGGAA  50

seq1  CGGCAATGAAGAAAGCAAGAGTCTCTGAGACATTTTCAGAGACAAGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATGAAGAAAGCAAGAGTCTCTGAGACATTTTCAGAGACAAGTCAG  100

seq1  ACACCGGGTCAATCAGTGGGTTATGCTGAGGAAAAAGCAACAACTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGGGTCAATCAGTGGGTTATGCTGAGGAAAAAGCAACAACTTCACA  150

seq1  AGTCTTACAAAGCAGCAGAAAAGGAAGGCTCTATAGCCATGCAGTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACAAAGCAGCAGAAAAGGAAGGCTCTATAGCCATGCAGTATTCA  200

seq1  GATTTGGCACATTTAACTTCTAAAAGGACAAGTGTTTTCCCTGGCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCACATTTAACTTCTAAAAGGACAAGTGTTTTCCCTGGCAATTT  250

seq1  GAATGTTTCTGTTGGAAGGTTTAGGTTATCCACTTCCCAGGTGCTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCTGTTGGAAGGTTTAGGTTATCCACTTCCCAGGTGCTTGGTG  300

seq1  ATGCAACAGAAGATGGAGAGAATCAGAATCAGTTGTTTCAAGAACAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGAAGATGGAGAGAATCAGAATCAGTTGTTTCAAGAACAAGCT  350

seq1  CAAGCTCTTCATCAACTTTGAAACAGGCAAGTCACCAGCTGGCTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTTCATCAACTTTGAAACAGGCAAGTCACCAGCTGGCTTCCTTT  400

seq1  AAAACTGTGAGTGAAAGAAATACATCAGTGCTTCCAAATGGTGGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGAGTGAAAGAAATACATCAGTGCTTCCAAATGGTGGAAGGAA  450

seq1  AAGTTGTCCCACCCAAGAGGGCTTTGGCTGTGGGAAAATTTCATTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCCACCCAAGAGGGCTTTGGCTGTGGGAAAATTTCATTTGTTG  500

seq1  CCATAAGTGAGGAGAGAGAGAATTTTTTTGTGAGCTGCCAGCATGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTGAGGAGAGAGAGAATTTTTTTGTGAGCTGCCAGCATGATTTC  550

seq1  CTTTCTGAAGACAAAGAAAAGGCTTTCAGCAAAATTCAGAAAGTAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAGACAAAGAAAAGGCTTTCAGCAAAATTCAGAAAGTAAAATT  600

seq1  CAAAAATCCCTTATCTGGAGGCTTTGCCAGACCACCTGGAGGAGCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCCCTTATCTGGAGGCTTTGCCAGACCACCTGGAGGAGCCATCT  650

seq1  TGGTTCCCAGACCCCTCAGAGTCTAGTCTGTGCAGGTGAGATTATGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAGACCCCTCAGAGTCTAGTCTGTGCAGGTGAGATTATGTCTA  700

seq1  CAGAAGCTAACAGCTTCTGGGACAGGTGAAAGCCACACGGCTTCTGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTAACAGCTTCTGGGACAGGTGAAAGCCACACGGCTTCTGGGTC  750

seq1  AGACCCCTTT-AAGGCTCCAGACATCCGGGCACCTTCCCTGCTGGAGGAG  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTTAAAGGCTCCAGACATCCGGGCACCTTCCCTGCTGGAGGAG  800

seq1  AGGTGTCTGTCCCGCCTGGGAGGGCTTTGCCAGAGCACCTGGGAGAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTGTCCCGCCTGGGAGGGCTTTGCCAGAGCACCTGGGAGAGCCA  850

seq1  TCTTGGTTCTGGACCCTTCAGAGACAACTCTGCACAGGTGAGAGTGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTCTGGACCCTTCAGAGACAACTCTGCACAGGTGAGAGTGTGGA  900

seq1  CTACAGAAGCTAACAGCTTCTTGGACAGGCCCTGTTTCAGGCCTTCATCT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTACAGAAGCTAACAGCTTCTTGGACAGGCCCTGTTTCA-GCCTTCATCT  949

seq1  TCTGCCAGGAGGCAGGTCCGAAGGCCAG-ATATCTGTGCACCTGCTCTGC  998
      |||||||||| ||||||||||| ||||| |||||||||||||||||||||
seq2  TCTGCCAGGAAGCAGGTCCGAA-GCCAGAATATCTGTGCACCTGCTCTGC  998

seq1  AAGAGGAGAGCTTTCCTACAGAGAGTATG-CTGACAACTGAAACTCAGAA  1047
       ||| |||||||||||||||||||||||| ||||| |||| |||||||||
seq2  -AGA-GAGAGCTTTCCTACAGAGAGTATGCCTGACCACTG-AACTCAGAA  1045

seq1  G-ACAGCTAGT-CTCCCAGGTCTGCTGATAGAGGC-TAAAAGAATCAAGG  1094
      | || |||||| ||||||||||||||||| ||||| |||||||||| |||
seq2  GAACTGCTAGTCCTCCCAGGTCTGCTGAT-GAGGCTTAAAAGAATC-AGG  1093

seq1  GA  1096
      ||
seq2  GA  1095