BAC Information

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BAC

Clone NameB6Ng01-208C18
Chromosome7 (Build37)
Map Location 5,919,162 - 5,920,231
singlet/doubletsinglet
Overlap geneLOC100041666
Upstream geneGm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
Downstream geneV1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C18.bB6Ng01-208C18.g
ACCGA027120GA027121
length1,2111,075
definitionB6Ng01-208C18.b B6Ng01-208C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaaaatcaaataaccccattaaaaaatggggctcagaactgaa
caaagaattctcacctgagtcataccgaatggcagagaagcacctgaaaa
aatgctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctg
agattccacctcacaccagtcagaatgtctaagatcaaaaattcaggtga
cagcagatgctggcgaggatgtggagaaagaggaacactcctccattgtt
ggtgggattgcaggcttgtacaaccactctggaaatctgtctggcggttc
ctcagaaaattggacatagtactaccggaggatccagcaatacctctcct
gggcatatatccagaagatgccccaactggtaagaaggacacatgctcca
ctatgttcatagcagccttatttataatagccagaagccggaaagaaccc
agatgcccctcaacagaggaatggatacagaaaatgtggtacatctacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
ccaaatggatggacctggagggcatcatcctgagtgaggtaacacattca
caaaggaactcacacaatatgtactcactgataagtggatattagcccaa
aacctaggatacccaagatataagatacaatttcctaaacacatgaaact
caagaaaaatgaagactgaagtgtggacactatgcccctccttagaagtg
ggaacaaaacacccttggaaggagttacagagacaaagtttggagctgag
atgaaaggatggaccatgtagagactgccttatccagggatccaccccat
aatcagcatccaaacgatgacaccattgcatacactagcaagattttatc
gaaagggacccagatgtagctgtctcttgtgagactatgccggggcctag
caaacatagaagtggatgttcacagtcagctaatggatgggatcacaggc
ttcccaatgggaggagctagagaaagtacctaagagctaaagggatctgc
acctatagtgatcaacattatgactaccagtacccgagctctggactcta
gcgcattatgtatcaagatggcctagttcggcaatcctgaagaatgctca
atggaacatccaactttattgatccctagaatcagggtaatgtccctaga
gatgtcctgat
gaattcagaaatacaaattcagtgttggagatatggttcaagatctagtg
acctctgctctcctttttaccactgcattcatgtatttcccaccatacat
gtgagaaaaacagtcataggaatacaataattaagtataactttcaaaaa
tagaatgcagggctggagagatggctcagtggttaagagcatttggctat
tctatcagaggatctgggttcagttccaaaatctgaaatggcagctcaca
acagtctgtgactccaattctaggctatctgacaccttcacagtcataca
tgtaggcaaaacaaatgtgtgtgtgtgtttccttaaaatataaagaaatt
caaaatttataaatcataatagaatatgactgtgtgatggtttgtatatt
cttgaatcagggagtgggaccatctgaaggtgtggccttgttggaatagg
tgtgacctggttgaaatgggtgtgtcactgtgggtgtgggtataagatcc
tcaccctagttgactggaagtcagtcttccactagcagactttggatgaa
gatatagaactctcagctcctcctgtgtcatggatactgccatgctctca
ccttgatgataatggactgaacctctgaacctgtaagccagccccaaata
aatgttgttttttataagacttgccttggtcatggtgtctgttcacagca
gtaaaaccctaactaagacagactgaaatatgtttccccaaataatctat
cttctgttgttataattttacactcctcatcatagtgatataatgcaata
tatataatgcaatataatgatgatatttcaaaaatgtcaccagtgttata
ttcacccattacggaccttgatttacacatatatcatctatgtggaaaaa
agtctaagtgacccaaccactcttttgatttataagttttttgactttta
tcttggtttctagggattgagtgcatggacacataccagaatgcatcatc
agcttcatcacccacaatcaattaacatcatcacttgttgaagtctttgc
acacgaaaataattgaatgtcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5919162_5920231
seq2: B6Ng01-208C18.g_63_1137

seq1  GAATTCAGAAATACAAATTCAGTGTTGGAGATATGGTTCAAGATCTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATACAAATTCAGTGTTGGAGATATGGTTCAAGATCTAGTG  50

seq1  ACCTCTGCTCTCCTTTTTACCACTGCATTCATGTATTTCCCACCATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTCTCCTTTTTACCACTGCATTCATGTATTTCCCACCATACAT  100

seq1  GTGAGAAAAACAGTCATAGGAATACAATAATTAAGTATAACTTTCAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAACAGTCATAGGAATACAATAATTAAGTATAACTTTCAAAAA  150

seq1  TAGAATGCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCATTTGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCATTTGGCTAT  200

seq1  TCTATCAGAGGATCTGGGTTCAGTTCCAAAATCTGAAATGGCAGCTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGAGGATCTGGGTTCAGTTCCAAAATCTGAAATGGCAGCTCACA  250

seq1  ACAGTCTGTGACTCCAATTCTAGGCTATCTGACACCTTCACAGTCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGTGACTCCAATTCTAGGCTATCTGACACCTTCACAGTCATACA  300

seq1  TGTAGGCAAAACAAATGTGTGTGTGTGTTTCCTTAAAATATAAAGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAAAACAAATGTGTGTGTGTGTTTCCTTAAAATATAAAGAAATT  350

seq1  CAAAATTTATAAATCATAATAGAATATGACTGTGTGATGGTTTGTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTATAAATCATAATAGAATATGACTGTGTGATGGTTTGTATATT  400

seq1  CTTGAATCAGGGAGTGGGACCATCTGAAGGTGTGGCCTTGTTGGAATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCAGGGAGTGGGACCATCTGAAGGTGTGGCCTTGTTGGAATAGG  450

seq1  TGTGACCTGGTTGAAATGGGTGTGTCACTGTGGGTGTGGGTATAAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTGGTTGAAATGGGTGTGTCACTGTGGGTGTGGGTATAAGATCC  500

seq1  TCACCCTAGTTGACTGGAAGTCAGTCTTCCACTAGCAGACTTTGGATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTAGTTGACTGGAAGTCAGTCTTCCACTAGCAGACTTTGGATGAA  550

seq1  GATATAGAACTCTCAGCTCCTCCTGTGTCATGGATACTGCCATGCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAACTCTCAGCTCCTCCTGTGTCATGGATACTGCCATGCTCTCA  600

seq1  CCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAATA  650

seq1  AATGTTGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCA  700

seq1  GTAAAACCCTAACTAAGACAGACTGAAATATGTTTCCCCAAATAATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCCTAACTAAGACAGACTGAAATATGTTTCCCCAAATAATCTAT  750

seq1  CTTCTGTTGTTATAATTTTACACTCCTCATCATAGTGATATAATGCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGTTATAATTTTACACTCCTCATCATAGTGATATAATGCAATA  800

seq1  TATATAATGCAATATAATGATGATATTTCAAAAATGTCACCAGTGTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGCAATATAATGATGATATTTCAAAAATGTCACCAGTGTTATA  850

seq1  TTCACCCA-GAAGGACCTTGATTTACACATATATCATCTATGTGGAAAAA  899
      ||||||||  | ||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCATTACGGACCTTGATTTACACATATATCATCTATGTGGAAAAA  900

seq1  AGTCTAAGTGACCCAACCACTCTTTTGATTTATAAG-TTTTTGAATTTTA  948
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGTCTAAGTGACCCAACCACTCTTTTGATTTATAAGTTTTTTGACTTTTA  950

seq1  TCTGGTTTTCTAAGGAATTGAGTGC-TGGACACATACCTG-ATGCATCTC  996
      ||| | ||||| ||| ||||||||| |||||||||||| | |||||||  
seq2  TCTTGGTTTCT-AGGGATTGAGTGCATGGACACATACCAGAATGCATCAT  999

seq1  CAGCTTTAATCACCCACAATCAA-TAACATCATCAC-TGTTAAAGTCTTT  1044
      |||| || ||||||||||||||| |||||||||||| |||| ||||||||
seq2  CAGC-TTCATCACCCACAATCAATTAACATCATCACTTGTTGAAGTCTTT  1048

seq1  GCACAC-AAAATATTTGAAAGTCAGTG  1070
      |||||| |||||| ||||| |||||||
seq2  GCACACGAAAATAATTGAATGTCAGTG  1075