BAC Information

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BAC

Clone NameB6Ng01-208H17
Chromosome7 (Build37)
Map Location 87,354,232 - 87,485,750
singlet/doubletdoublet
Overlap geneSema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a
Upstream geneAbhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2
Downstream geneHddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H17.bB6Ng01-208H17.g
ACCGA027352GA027353
length9371,089
definitionB6Ng01-208H17.b B6Ng01-208H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,484,814 - 87,485,750)(87,354,232 - 87,355,289)
sequence
gaattctgcagtgggagacttgtagcttccagattagtggagaggaagtc
actaaatcataattacaaccaatgctgtaaatgaaaacaagtaacagaag
ctgctttgtcttaaggggtttggacggtgttaataaagaggatttgttaa
tcttggacacattgtagtaggaggtttaattctgaatctgccgcgtttgt
cttcaaggtacttgcgagctcccagatttgtatgcaaaatatgtgtatgc
atctgtatttatcccctgctctcgtgggactctgggctctgcaaaccctg
acttgtagcagccagtagacaaccttgagtctctcctgtctccccagggg
tccaggcccgctcctagcactgggcatctacactctactgctgatggcac
tgatgactacagatttcgtgcacttctgccgtggtcggggacggagagaa
aaacaaaactccagcggctgccgccgcctttcctttagagcctcttccgc
gcgccctctacaggttccagtgggaacagactaggcgctcgtgaagcagc
cctgagcctgagcctgcgcctgcgcaacgcgagtaccccgcccttgcaca
gacccaaccacttcttggcctcgccttgtttagcgtaacactgacgcatt
gctggggcggggcagtcgccggcatctcgcggatcccagggacacctttg
ctctaaagactgcgcctgcactggctcttggagcttagcttcgtgatgac
tgtgagtggcccggagacccccgagccccgaccttccgaccccggggtgc
gtactgattctcctgtgccatctcccctttcacacatgcgccttcgcacc
tggtcgccgtcaccttattctagcccttcacgggactcggccaagacccg
gctcttctcccaggcgcgctgctctgcccaacgcctt
gaattcagtgggtgtcatacagaagggcctcctggagcttctcagagtgt
agtccttgggctacctcctcctaagtcactgggagctggtcaagaggctc
agaccagcagtttcagaatctcttgggagggcctggagtccgggtgatgt
ttagggaggttggcattggtgctggaactttccttggccccccaatttat
cgaagtactaagggttggaagtctctggagctgcaggagttgagtttgag
aaaaggctcttggtggtttaaagagaggtttcaactgcctctggcctcag
gcaggaccgttccttaaagttctagcgcagccctgtgtgtaactctgggt
tttaggagtttgtcaagacttcagccacagagctatacaaatgtcctcaa
acttctgcaccgcatccctccccaggagagcttctggggcgcagcggtgg
gggccctgttgtccagtgactggagctgctctctacctcatgtgtctcag
caggcttactagggaagccccacctgagagctgcttcagcaccctgtgct
gtgtggtaaaaaaaagctgagcttccgtcaaagggctagtgtggtttcct
gttcttgaacagtgtgagaaccaagttttttcatttcccctttctccgtg
gctaccaggagtcttggtactaaattttgcaacccaccccaatagctatg
taaagatcctgtgacctgcttgtgtgaccgctcttttctctctggtttag
atgttcttcttcagattggttttttctctgcctgtgattttaatgcttct
attctcaacactttcttgtcttttgttgttttccttacctcttccttgga
aacaggctggagggtattgtaaagacacggggaacacgcagacacacatg
gaagtcatccctccacattgcttggctggcatgcttgtcttcattggact
tcccagcctctgtagagtgtgtttgtttgcattggtcctgaaccaactgg
tctgttgggacaatgccctgaaggcttgctcaagggctcgccttcctgct
ttggttgtgggtttttagtctctttacttttgtttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_87484814_87485750
seq2: B6Ng01-208H17.b_46_982 (reverse)

seq1  AAGGCGTTGGGCAGAGCAGCGCGCCTGGGAGAAGAGCCGGGTCTTGGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTTGGGCAGAGCAGCGCGCCTGGGAGAAGAGCCGGGTCTTGGCCG  50

seq1  AGTCCCGTGAAGGGCTAGAATAAGGTGACGGCGACCAGGTGCGAAGGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGTGAAGGGCTAGAATAAGGTGACGGCGACCAGGTGCGAAGGCGC  100

seq1  ATGTGTGAAAGGGGAGATGGCACAGGAGAATCAGTACGCACCCCGGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAAAGGGGAGATGGCACAGGAGAATCAGTACGCACCCCGGGGTC  150

seq1  GGAAGGTCGGGGCTCGGGGGTCTCCGGGCCACTCACAGTCATCACGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCGGGGCTCGGGGGTCTCCGGGCCACTCACAGTCATCACGAAGC  200

seq1  TAAGCTCCAAGAGCCAGTGCAGGCGCAGTCTTTAGAGCAAAGGTGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCAAGAGCCAGTGCAGGCGCAGTCTTTAGAGCAAAGGTGTCCCT  250

seq1  GGGATCCGCGAGATGCCGGCGACTGCCCCGCCCCAGCAATGCGTCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCGCGAGATGCCGGCGACTGCCCCGCCCCAGCAATGCGTCAGTGT  300

seq1  TACGCTAAACAAGGCGAGGCCAAGAAGTGGTTGGGTCTGTGCAAGGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTAAACAAGGCGAGGCCAAGAAGTGGTTGGGTCTGTGCAAGGGCGG  350

seq1  GGTACTCGCGTTGCGCAGGCGCAGGCTCAGGCTCAGGGCTGCTTCACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCGCGTTGCGCAGGCGCAGGCTCAGGCTCAGGGCTGCTTCACGAG  400

seq1  CGCCTAGTCTGTTCCCACTGGAACCTGTAGAGGGCGCGCGGAAGAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGTCTGTTCCCACTGGAACCTGTAGAGGGCGCGCGGAAGAGGCTC  450

seq1  TAAAGGAAAGGCGGCGGCAGCCGCTGGAGTTTTGTTTTTCTCTCCGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAGGCGGCGGCAGCCGCTGGAGTTTTGTTTTTCTCTCCGTCCC  500

seq1  CGACCACGGCAGAAGTGCACGAAATCTGTAGTCATCAGTGCCATCAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCACGGCAGAAGTGCACGAAATCTGTAGTCATCAGTGCCATCAGCAG  550

seq1  TAGAGTGTAGATGCCCAGTGCTAGGAGCGGGCCTGGACCCCTGGGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTAGATGCCCAGTGCTAGGAGCGGGCCTGGACCCCTGGGGAGAC  600

seq1  AGGAGAGACTCAAGGTTGTCTACTGGCTGCTACAAGTCAGGGTTTGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGACTCAAGGTTGTCTACTGGCTGCTACAAGTCAGGGTTTGCAGA  650

seq1  GCCCAGAGTCCCACGAGAGCAGGGGATAAATACAGATGCATACACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGTCCCACGAGAGCAGGGGATAAATACAGATGCATACACATATT  700

seq1  TTGCATACAAATCTGGGAGCTCGCAAGTACCTTGAAGACAAACGCGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACAAATCTGGGAGCTCGCAAGTACCTTGAAGACAAACGCGGCAG  750

seq1  ATTCAGAATTAAACCTCCTACTACAATGTGTCCAAGATTAACAAATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATTAAACCTCCTACTACAATGTGTCCAAGATTAACAAATCCTC  800

seq1  TTTATTAACACCGTCCAAACCCCTTAAGACAAAGCAGCTTCTGTTACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAACACCGTCCAAACCCCTTAAGACAAAGCAGCTTCTGTTACTTG  850

seq1  TTTTCATTTACAGCATTGGTTGTAATTATGATTTAGTGACTTCCTCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTACAGCATTGGTTGTAATTATGATTTAGTGACTTCCTCTCCA  900

seq1  CTAATCTGGAAGCTACAAGTCTCCCACTGCAGAATTC  937
      |||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGGAAGCTACAAGTCTCCCACTGCAGAATTC  937

seq1: chr7_87354232_87355289
seq2: B6Ng01-208H17.g_67_1155

seq1  GAATTCAGTGGGTGTCATACAGAAGGGCCTCCTGGAGCTTCTCAGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTGTCATACAGAAGGGCCTCCTGGAGCTTCTCAGAGTGT  50

seq1  AGTCCTTGGGCTACCTCCTCCTAAGTCACTGGGAGCTGGTCAAGAGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGGGCTACCTCCTCCTAAGTCACTGGGAGCTGGTCAAGAGGCTC  100

seq1  AGACCAGCAGTTTCAGAATCTCTTGGGAGGGCCTGGAGTCCGGGTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCAGTTTCAGAATCTCTTGGGAGGGCCTGGAGTCCGGGTGATGT  150

seq1  TTAGGGAGGTTGGCATTGGTGCTGGAACTTTCCTTGGCCCCCCAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGGTTGGCATTGGTGCTGGAACTTTCCTTGGCCCCCCAATTTAT  200

seq1  CGAAGTACTAAGGGTTGGAAGTCTCTGGAGCTGCAGGAGTTGAGTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTACTAAGGGTTGGAAGTCTCTGGAGCTGCAGGAGTTGAGTTTGAG  250

seq1  AAAAGGCTCTTGGTGGTTTAAAGAGAGGTTTCAACTGCCTCTGGCCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTCTTGGTGGTTTAAAGAGAGGTTTCAACTGCCTCTGGCCTCAG  300

seq1  GCAGGACCGTTCCTTAAAGTTCTAGCGCAGCCCTGTGTGTAACTCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCGTTCCTTAAAGTTCTAGCGCAGCCCTGTGTGTAACTCTGGGT  350

seq1  TTTAGGAGTTTGTCAAGACTTCAGCCACAGAGCTATACAAATGTCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGTTTGTCAAGACTTCAGCCACAGAGCTATACAAATGTCCTCAA  400

seq1  ACTTCTGCACCGCATCCCTCCCCAGGAGAGCTTCTGGGGCGCAGCGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCACCGCATCCCTCCCCAGGAGAGCTTCTGGGGCGCAGCGGTGG  450

seq1  GGGCCCTGTTGTCCAGTGACTGGAGCTGCTCTCTACCTCATGTGTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTTGTCCAGTGACTGGAGCTGCTCTCTACCTCATGTGTCTCAG  500

seq1  CAGGCTTACTAGGGAAGCCCCACCTGAGAGCTGCTTCAGCACCCTGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTACTAGGGAAGCCCCACCTGAGAGCTGCTTCAGCACCCTGTGCT  550

seq1  GTGTGGTAAAAAAAAGCTGAGCTTCCGTCAAAGGGCTAGTGTGGTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAAAAAAAAGCTGAGCTTCCGTCAAAGGGCTAGTGTGGTTTCCT  600

seq1  GTTCTTGAACAGTGTGAGAACCAAGTTTTTTCATTTCCCCTTTCTCCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAACAGTGTGAGAACCAAGTTTTTTCATTTCCCCTTTCTCCGTG  650

seq1  GCTACCAGGAGTCTTGGTACTAAA-TTTGCAACCCACCCCAATAGCTATG  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTACCAGGAGTCTTGGTACTAAATTTTGCAACCCACCCCAATAGCTATG  700

seq1  TAAAGATCCTGTGACCTGCTTGTGTGACCGCTCTTTTCTCTCTGGTTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCCTGTGACCTGCTTGTGTGACCGCTCTTTTCTCTCTGGTTTAG  750

seq1  ATG-TCTTCTTCAGATTGG-TTTTTCTCTGCCTGTGATTTTAATGCTTCT  797
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTTCTTCTTCAGATTGGTTTTTTCTCTGCCTGTGATTTTAATGCTTCT  800

seq1  A-TCTCAACACTTTCTTGTC-TTTGT--GTTTCCTTACCTCTTCC-TGGA  842
      | |||||||||||||||||| |||||   |||||||||||||||| ||||
seq2  ATTCTCAACACTTTCTTGTCTTTTGTTGTTTTCCTTACCTCTTCCTTGGA  850

seq1  ACCAGGCT-GAGGGTA-TGTAAAGACACGGG--ACACGCAGACACACAT-  887
      | |||||| ||||||| ||||||||||||||  |||||||||||||||| 
seq2  AACAGGCTGGAGGGTATTGTAAAGACACGGGGAACACGCAGACACACATG  900

seq1  GAAGTCATCC--TCACATTGCTTGGCTGGCATGC-TGTCTTCAT--GGCT  932
      ||||||||||   ||||||||||||||||||||| |||||||||  | ||
seq2  GAAGTCATCCCTCCACATTGCTTGGCTGGCATGCTTGTCTTCATTGGACT  950

seq1  TCCCAG-CTCTGT-GAGTGTGTTTGTTTGCA-TGGTCCTGAGCC-ACTGG  978
      |||||| |||||| ||||||||||||||||| ||||||||| || |||||
seq2  TCCCAGCCTCTGTAGAGTGTGTTTGTTTGCATTGGTCCTGAACCAACTGG  1000

seq1  TCGGTTGGGAC-ATG-CCTG-AGGC-TGGTCAGGGGCT-GCCTT-CTGCT  1022
      || |||||||| ||| |||| |||| || ||| ||||| ||||| |||||
seq2  TCTGTTGGGACAATGCCCTGAAGGCTTGCTCAAGGGCTCGCCTTCCTGCT  1050

seq1  T--GGTGTGGGTTTTT-GTTTCTTTAGTTTGTTTTGGTT  1058
      |  | ||||||||||| || |||||| |||  |||||||
seq2  TTGGTTGTGGGTTTTTAGTCTCTTTACTTTTGTTTGGTT  1089