BAC Information

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BAC

Clone NameB6Ng01-208P22
Chromosome12 (Build37)7 (Build37)
Map Location 104,839,648 - 104,840,84051,703,767 - 51,704,041
singlet/doubletsingletsinglet
Overlap gene8430415E04Rik
Upstream geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik
Downstream geneSerpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208P22.bB6Ng01-208P22.g
ACCGA027728GA027729
length1,173236
definitionB6Ng01-208P22.b B6Ng01-208P22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,839,648 - 104,840,840)(51,703,767 - 51,704,041)
sequence
gaattcagagtttggtttagttttatttctgtggcctttttacatcacag
aatattgcccttgggagtttgtccaactaaaacagcaactctggcattgt
tctgtaatgcacatttctttcctacgaggtgttgagtgtttctcattagc
agagcctttgtctaactatagttatttaaccatgcttatttcaatcctat
ttggcaaatgacaacatatttttttctttaaaaagtctgagaggaaagag
aagtctaccaaacatatttaaaatatcttactgaagtttgatatgtagaa
aaccacttaaaactgtaaactaaagaaaatggcattttcacacagaagat
ccttccaggcaaactgaccatctgcttatgattatgtggaacactgcaga
gaagagctcaactagcctgaacgagctttagtcctttaaacaggcatcca
ctgtccacctctgtatttgctctaacatccttttaactatcaggcaaacc
tttgaaatatatttttaggggactagagagatggctcagtgggtaagaac
aagtaatgctcttccagaggtctcgtgctgcatgactcaaccacctgcaa
caagctccagggaatccaactcctttctcacatacataacacataagtaa
aaaaaggattgtctttttagcggatggatactgaggatggatgctgagga
tagatactgaggatggatggatgctaaggataaatgatgctgaggatgga
tgctgaggatagaaactgagtatgaatggatgctgaggatggattgccag
ggacaggaggaaatgtctcaactaggactgaatatatgtggttactcaca
cattagtttcacttaagaaactcactttgctaaacactctcaactgtaat
ttttcttctaattataaaagataaaacttcagaaaatcaaggcttttttc
ttcagccttttaggaaatatggaacaccataaaactgaaataattagctt
taggtttactaacaaagctcagctaatgctaactagaaggcctgtgtctg
tggaaacaacatacattccaaaacagcagctctctctttcttttcctgaa
tccacatcttctcataggctttttcgactgtgactatgtgacggttcagc
ctattattgccaagacgtcttgc
tcccatgcaagagatggtgatagaaagactctggccttggggccttccta
ctctacagagtgagatcctgtcttaaaacaagatggggaaaaagagtgtg
tttgtgtatgttcatgtatatgtgtgtgtatgtttgtgtgtgtgtgtgtt
tgtgtgcttgattgtgtgggtatgtatgcatgtttgtagtggtgtgtttg
ggcgtccttgttgtatgtgtgtatttttgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104839648_104840840
seq2: B6Ng01-208P22.b_49_1221 (reverse)

seq1  GCAAGA--GCTTGGCAATAAT-GACTGACAGTGTCACTTTAAATTTTACA  47
      ||||||   |||||||||||| | |||| |  |||||     ||  | ||
seq2  GCAAGACGTCTTGGCAATAATAGGCTGA-ACCGTCAC-----ATAGT-CA  43

seq1  CAGTTCCAGAAAAAAAACTATGAGAAAGATTTGTTGGATCAAGAGAAAGA  97
      ||||      |||||  ||||||| |||||    |||||  ||  |||||
seq2  CAGT----CGAAAAAGCCTATGAG-AAGAT---GTGGATTCAGGAAAAGA  85

seq1  AAGAGAAGAGCTGCTGTTTTTGGAAATGGTATGTTGTTTCCCACAGACAC  147
      ||||| |||||||||| ||||||||   ||||||||||| ||||||||||
seq2  AAGAG-AGAGCTGCTG-TTTTGGAA--TGTATGTTGTTT-CCACAGACAC  130

seq1  AGGCCTTTCTAGTTAGCATTAGCTGAGCTTTGTTAGTAAACCTAAAGCTA  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCC-TTCTAGTTAGCATTAGCTGAGCTTTGTTAGTAAACCTAAAGCTA  179

seq1  ATTTATTTCAGTTTTATGTTGTTCCATATTTCCTAAAAGGCTGAAGAAAA  247
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  A-TTATTTCAGTTTTATGGTGTTCCATATTTCCTAAAAGGCTGAAGAAAA  228

seq1  AAGCCTTGATTTTCTGAAGTTTTATCTTTTATAAATTAGAAGAAAAATTA  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGCCTTGATTTTCTGAAGTTTTATCTTTTAT-AATTAGAAGAAAAATTA  277

seq1  CAGTTGAGAGTGTTTAGCAAAGTGAGTTTCTTAAGTGAAACTAATGTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGAGTGTTTAGCAAAGTGAGTTTCTTAAGTGAAACTAATGTGTG  327

seq1  AGTAACCACATATATTCAGTCCTAGTTGAGACATTTCCTCCTGTCCCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCACATATATTCAGTCCTAGTTGAGACATTTCCTCCTGTCCCTGG  377

seq1  CAATCCATCCTCAGCATCCATTCATACTCAGTTTCTATCCTCAGCATCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATCCTCAGCATCCATTCATACTCAGTTTCTATCCTCAGCATCCA  427

seq1  TCCTCAGCATCATTTATCCTTAGCATCCATCCATCCTCAGTATCTATCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCATCATTTATCCTTAGCATCCATCCATCCTCAGTATCTATCCT  477

seq1  CAGCATCCATCCTCAGTATCCATCCGCTAAAAAGACAATCCTTTTTTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCATCCTCAGTATCCATCCGCTAAAAAGACAATCCTTTTTTTAC  527

seq1  TTATGTGTTATGTATGTGAGAAAGGAGTTGGATTCCCTGGAGCTTGTTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTTATGTATGTGAGAAAGGAGTTGGATTCCCTGGAGCTTGTTGC  577

seq1  AGGTGGTTGAGTCATGCAGCACGAGACCTCTGGAAGAGCATTACTTGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGAGTCATGCAGCACGAGACCTCTGGAAGAGCATTACTTGTTC  627

seq1  TTACCCACTGAGCCATCTCTCTAGTCCCCTAAAAATATATTTCAAAGGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGAGCCATCTCTCTAGTCCCCTAAAAATATATTTCAAAGGTT  677

seq1  TGCCTGATAGTTAAAAGGATGTTAGAGCAAATACAGAGGTGGACAGTGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATAGTTAAAAGGATGTTAGAGCAAATACAGAGGTGGACAGTGGA  727

seq1  TGCCTGTTTAAAGGACTAAAGCTCGTTCAGGCTAGTTGAGCTCTTCTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTTAAAGGACTAAAGCTCGTTCAGGCTAGTTGAGCTCTTCTCTG  777

seq1  CAGTGTTCCACATAATCATAAGCAGATGGTCAGTTTGCCTGGAAGGATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCCACATAATCATAAGCAGATGGTCAGTTTGCCTGGAAGGATCT  827

seq1  TCTGTGTGAAAATGCCATTTTCTTTAGTTTACAGTTTTAAGTGGTTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGAAAATGCCATTTTCTTTAGTTTACAGTTTTAAGTGGTTTTCT  877

seq1  ACATATCAAACTTCAGTAAGATATTTTAAATATGTTTGGTAGACTTCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAAACTTCAGTAAGATATTTTAAATATGTTTGGTAGACTTCTCT  927

seq1  TTCCTCTCAGACTTTTTAAAGAAAAAAATATGTTGTCATTTGCCAAATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCAGACTTTTTAAAGAAAAAAATATGTTGTCATTTGCCAAATAG  977

seq1  GATTGAAATAAGCATGGTTAAATAACTATAGTTAGACAAAGGCTCTGCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAATAAGCATGGTTAAATAACTATAGTTAGACAAAGGCTCTGCTA  1027

seq1  ATGAGAAACACTCAACACCTCGTAGGAAAGAAATGTGCATTACAGAACAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACACTCAACACCTCGTAGGAAAGAAATGTGCATTACAGAACAA  1077

seq1  TGCCAGAGTTGCTGTTTTAGTTGGACAAACTCCCAAGGGCAATATTCTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGTTGCTGTTTTAGTTGGACAAACTCCCAAGGGCAATATTCTGT  1127

seq1  GATGTAAAAAGGCCACAGAAATAAAACTAAACCAAACTCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAAAGGCCACAGAAATAAAACTAAACCAAACTCTGAATTC  1173

seq1: chr7_51703767_51704041
seq2: B6Ng01-208P22.g_165_305 (reverse)

seq1  ACACACACAAAACACACCATCCTTAGAGACTACATATATACACACAGTCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACATACCATCCTTACAGACTATACACACACACACACACACACACACACAC  100
                              ||||||||| | | ||||||| ||| 
seq2  ------------------------ACACACACAAAAATACACACATACA-  25

seq1  ACACACACACACAAACACACACACTCACTTAACATACCATCCTCAGAGAC  150
      |||   || | |||||||||     ||||  ||| | |||          
seq2  ACAAGGACGCCCAAACACAC-----CACT--ACA-AACAT----------  57

seq1  TTCACACACATATTCACTTAACATACTATCTTCAGAGACTGCACATACAC  200
          || |||||  |||       || ||              ||  |||
seq2  ---GCATACATACCCAC-------ACAAT--------------CAAGCAC  83

seq1  ACACACACACACACACACACACACACACACACACACACAGTCAACATACC  250
      ||| ||||||||||||||| ||| ||||||||| | ||| | ||||    
seq2  ACAAACACACACACACACAAACATACACACACATATACA-TGAACA----  128

seq1  ATCCTTACAGACTACACAAACACAC  275
                  |||||||||||||
seq2  ------------TACACAAACACAC  141