BAC Information

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BAC

Clone NameB6Ng01-209B09
Chromosome7 (Build37)
Map Location 4,787,023 - 4,928,227
singlet/doubletdoublet
Overlap geneD430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078
Upstream genePira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s
Downstream geneZfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B09.bB6Ng01-209B09.g
ACCGA027796GA027797
length595928
definitionB6Ng01-209B09.b B6Ng01-209B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,927,628 - 4,928,227)(4,787,023 - 4,787,945)
sequence
ttcaaggccaaggctagtgaaaatgtgtcacttcttgcaagtgggggaag
acattaacaggcagcaacatgttcaagagtccttgccatgcctgtatatg
agagcacagggttggccagaggctcccatgtgcatcctctgatcagagac
agtgtatcacatgccagaccgtgagagagactcgcctacaaggggagaaa
ctgagctcaccaatgttttgttgagctgttgagggtcaaagcaagtcaca
gaaggtcaaacaagatgctatttatacaaaattgaaaaacaggcaacatg
acaccctatggcagtgatagatttattcacacagggagcaaaatgtagca
aaatcttttctgttttaaatcaagcagtagcagatgcctcatgaaagcga
gtggctgcttctgggaagaaaggccaagatttaaagaggaaaaaagggta
caaaaggcttcagttatctgggaagttttgtttcttattacgtttatgta
tttagtgtgaggggtgtgcctttgtggcacagcccacatgtgacatttat
gtatttagtgtgaggggtgtgccctttgtgacacatcccacatgt
gaattcttggacttaggaaaacaggcttatccagaaaggctggacttttg
ttctattttgtatccctagcccctggcccacagaaagtgcttaagaaata
ctggttgagctgggcagtggtggcgcacgcctttaatcccagcacttggg
aggcagaggcaggcagattcctaaattcaaggccagcctggtctacagaa
tgagttccaggacagtaagagctacacagagaaactctgtctcaaaaaac
caaaaaaattgaaaaaaagaaatactggttgaatgaatccaactctctat
accaattcttttctacagccaggtccttttgtcgcttctgtcactgggct
ttagttacttcccacaactaacttggacctcagccatccgtgtggccacg
ccccaacaggttcgtattctgaggcgcaggccctgtcccccaccaagcca
cccttattgcccagaccacatccccaagccggttgacctctcacagagta
agccctgccacttaatcagttgctccacttcccagtaccaagaaaccgcc
tccatcggattgtctgttccccagtgccaggttccaggctccctcctgtc
cctccaatcccaattcacacttacctgggcacgttgatctcccggtgcgc
cctgggtgcacgtgacgccttgctgaaggccactttggcaccgacgccca
ccgccagggcgaaactgatgactccgcacaccacgtaggctgtgctgccc
cctgggccctctcccccacgtcccccagcgcccccggcccggcccccttt
ccagccaccctgcctggcccgggccctgggtcccccacccgcacccccag
cggcccgggcgcctccagccagcggcgggggcgtggtggcccagcgtggc
gtgtcgtaatttggagcatgaggcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4927628_4928227
seq2: B6Ng01-209B09.b_45_645 (reverse)

seq1  ACATGTGGGCTGTGTCACAAA-GGCACACCCCTCACACTAAATACATAAA  49
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ACATGTGGGATGTGTCACAAAGGGCACACCCCTCACACTAAATACATAAA  50

seq1  TGTCACATGTGGGCTGTGCCACAAAGGCACACCCCTCACACTAAATACAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGTGGGCTGTGCCACAAAGGCACACCCCTCACACTAAATACAT  100

seq1  AAACGTAATAAGAAACAAAACTTCCCAGATAACTGAAGCCTTTTGTACCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAATAAGAAACAAAACTTCCCAGATAACTGAAGCCTTTTGTACCC  150

seq1  TTTTTTCCTCTTTAAATCTTGGCCTTTCTTCCCAGAAGCAGCCACTCGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTTTAAATCTTGGCCTTTCTTCCCAGAAGCAGCCACTCGCT  200

seq1  TTCATGAGGCATCTGCTACTGCTTGATTTAAAACAGAAAAGATTTTGCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGGCATCTGCTACTGCTTGATTTAAAACAGAAAAGATTTTGCTA  250

seq1  CATTTTGCTCCCTGTGTGAATAAATCTATCACTGCCATAGGGTGTCATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTCCCTGTGTGAATAAATCTATCACTGCCATAGGGTGTCATGT  300

seq1  TGCCTGTTTTTCAATTTTGTATAAATAGCATCTTGTTTGACCTTCTGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTTTTCAATTTTGTATAAATAGCATCTTGTTTGACCTTCTGTGA  350

seq1  CTTGCTTTGACCCTCAACAGCTCAACAAAACATTGGTGAGCTCAGTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTGACCCTCAACAGCTCAACAAAACATTGGTGAGCTCAGTTTCT  400

seq1  CCCCTTGTAGGCGAGTCTCTCTCACGGTCTGGCATGTGATACACTGTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTAGGCGAGTCTCTCTCACGGTCTGGCATGTGATACACTGTCTC  450

seq1  TGATCAGAGGATGCACATGGGAGCCTCTGGCCAACCCTGTGCTCTCATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGAGGATGCACATGGGAGCCTCTGGCCAACCCTGTGCTCTCATAT  500

seq1  ACAGGCATGGCAAGGACTCTTGAACATGTTGCTGCCTGTTAATGTCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGGCAAGGACTCTTGAACATGTTGCTGCCTGTTAATGTCTTCC  550

seq1  CCCACTTGCAAGAAGTGACACATTTTCACTAGCCTTGGCCTTGAAGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGCAAGAAGTGACACATTTTCACTAGCCTTGGCCTTGAAGAATT  600

seq1  C  600
      |
seq2  C  601

seq1: chr7_4787023_4787945
seq2: B6Ng01-209B09.g_72_999

seq1  GAATTCTTGGACTTAGGAAAACAGGCTTATCCAGAAAGGCTGGACTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACTTAGGAAAACAGGCTTATCCAGAAAGGCTGGACTTTTG  50

seq1  TTCTATTTTGTATCCCTAGCCCCTGGCCCACAGAAAGTGCTTAAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTGTATCCCTAGCCCCTGGCCCACAGAAAGTGCTTAAGAAATA  100

seq1  CTGGTTGAGCTGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGAGCTGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGG  150

seq1  AGGCAGAGGCAGGCAGATTCCTAAATTCAAGGCCAGCCTGGTCTACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATTCCTAAATTCAAGGCCAGCCTGGTCTACAGAA  200

seq1  TGAGTTCCAGGACAGTAAGAGCTACACAGAGAAACTCTGTCTCAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGTAAGAGCTACACAGAGAAACTCTGTCTCAAAAAAC  250

seq1  CAAAAAAATTGAAAAAAAGAAATACTGGTTGAATGAAT-GAACTCTCTAT  299
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  CAAAAAAATTGAAAAAAAGAAATACTGGTTGAATGAATCCAACTCTCTAT  300

seq1  ACCAATTCTTTTCTACAGCCAGGTCCTTTTGTCGCTTCTGTCACTGGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCTTTTCTACAGCCAGGTCCTTTTGTCGCTTCTGTCACTGGGCT  350

seq1  TTAGTTACTTCCCACAACTAACTTGGACCTCAGCCATCCGTGTGGCCACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTTCCCACAACTAACTTGGACCTCAGCCATCCGTGTGGCCACG  400

seq1  CCCCAACAGGTTCGTATTCTGAGGCGCAGGCCCTGTCCCCCACCAAGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAGGTTCGTATTCTGAGGCGCAGGCCCTGTCCCCCACCAAGCCA  450

seq1  CCCTTATTGCCCAGACCACATCCCCAAGCCGGTTGACCTCTCACAGAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTGCCCAGACCACATCCCCAAGCCGGTTGACCTCTCACAGAGTA  500

seq1  AGCCCTGCCACTTAATCAGTTGCTCCACTTCCCAGTACCAAGAAACCGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCACTTAATCAGTTGCTCCACTTCCCAGTACCAAGAAACCGCC  550

seq1  TCCATCGGATTGTCTGTTCCCCAGTGCCAGGTTCCAGGCTCCCTCCTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGGATTGTCTGTTCCCCAGTGCCAGGTTCCAGGCTCCCTCCTGTC  600

seq1  CCTCCAATCCCAATTCACACTTACCTGGGCACGTTGATCTCCCGGTGCGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCCCAATTCACACTTACCTGGGCACGTTGATCTCCCGGTGCGC  650

seq1  CCTGGGTGCACGTGACGCCTTGCTGAAGGCCACTTTGGCACCGACGCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGCACGTGACGCCTTGCTGAAGGCCACTTTGGCACCGACGCCCA  700

seq1  CCGCCAGGGCGAAACTGATGACTCCGCACACCACGTAGGCTGTGCTGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAGGGCGAAACTGATGACTCCGCACACCACGTAGGCTGTGCTGCCC  750

seq1  CCTGGGCCCTCTCCCCCACGTCCCCCAGCGCCCCCGGCCCGGCCCCC-TT  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTGGGCCCTCTCCCCCACGTCCCCCAGCGCCCCCGGCCCGGCCCCCTTT  800

seq1  CCAGCCACCCTGCCTGGCCC-GGCCCT-GGTCCCCCACCCGCACCCCCAG  846
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CCAGCCACCCTGCCTGGCCCGGGCCCTGGGTCCCCCACCCGCACCCCCAG  850

seq1  CGCCCCCGGCGCCTCCAGCCAGCGGCGGGGGCGTGGTGGCCCAGCGTGGC  896
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCGGGCGCCTCCAGCCAGCGGCGGGGGCGTGGTGGCCCAGCGTGGC  900

seq1  GTGTCGT-AGTTGGAGCAGGAGGCCTGC  923
      ||||||| | |||||||| |||||||||
seq2  GTGTCGTAATTTGGAGCATGAGGCCTGC  928