BAC Information

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BAC

Clone NameB6Ng01-209O20
Chromosome7 (Build37)
Map Location 49,729,154 - 49,842,421
singlet/doubletdoublet
Overlap geneBC063263, LOC100039449, EG637776
Upstream geneEG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503
Downstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O20.bB6Ng01-209O20.g
ACCGA028407GA028408
length1,1961,042
definitionB6Ng01-209O20.b B6Ng01-209O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,729,154 - 49,730,338)(49,841,402 - 49,842,421)
sequence
gaattcactttgtggatcaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgtgccaccaccgcctggca
tagtctattttcaaagaaattgcttagtgaatatattagttagggtttct
tttgctgtggagagacatcataactacagtaactcctataaagaaaaata
ttttattttggctgacttgcagatgcagagtttttgcaaattgtcttcat
ggtgggaaacatagtggcatgcaggtagacatggtgctccagagatagct
gagatttctacctttggatcagcaggcaccaggaagaaagaatgacagtg
ggtttcacttgagcatctgaaacctcaaggcccaatccaatgacatactt
cttccaacaaaaccacacctactccaacaagaccacaccatctaatgtca
ctccctatatgtctgtgtatgctattttcagtcaaaccaccagagtgaat
ataagatgcattttggggtgtcttaaggtttccattgctgtgaaaagata
acatgaccaaggcaactcttaaaagaacaatatttaatcaaagctggctt
acaggttcagagactcagagcataatcaagagagaaagtacagcagggtc
caggcaggtacggcacaggaggagctgagagttctacattttgttcagga
ggcaaacagtagaagactggctcccagatgactagaaagagggtctcaaa
tcctaccccaacagagacacacttcctccagcaaggccacacctattcaa
acaaggctacacctcctagttgtgtactccctcagccaagcatattcaaa
ccaccacactggaaatttttttttcaaattcaaaccagtataggggatac
ctgatgtgactccaatattgaagagttgaacagtgagtggttaaagactt
ccatccattcttcataaaaacaaaacaaaaccaaaacaaaacatacttct
tggggtgaacagtgtatcagtaattacccttgcctttgtctcatgcttaa
ttttaataatgtgtctaattacagcctgtggtaatggacttcaaacatct
ttggcattggtaacgatttgattccaggtatggaattcagcatggatcta
taagacctgagaaccaaagttaatggatatttgtgaaacacattct
gaattccctaggaaggagtagccctggcaatggaagggtgtggtgcttat
aatatctccgtccatggtacacgcagaggcattggttttgggatgcagtg
ggaaggctagtggaaacctgaaggtctagttcctagaagttttgtccatt
gcattccacattctgttttgtgtgataactttccccaatagttaagaaat
tggtagagagaaggtgatagatgtcatccttcagtaatatttgattacaa
tccttttaacttttcatgaccaccaactgcaaagatgtgattcaaggaaa
ttcaactattgggtgtaataggagttttgaagatgcagaggttttccaga
tgtgcgtggtattatgaaggtggacatgtcaaatttcacatcttgtgaca
aaatccatgtgtcaggaagtagacattaaattactgttcaacatgacctt
gtgtacaaatcagtaggactgggacttcctgaaacctactttgggcccaa
gggtctacaaaaacaaacagagcttacctttctgatcaccttcatttcca
aagagcatggagcctctcagtgtggaagacagagcagcagtaagtggaga
ggcagaaatatgacagtatagatgcctctatgagttattttgtgggaatt
ataaaccccatgcacagaggttaagagcaccgactactcttctgaaggac
ctgagttcaaatcccagcaaccacatggtggctcacaaccatccctaagg
agatctaactccctctttctggagtgtctaaagacagctgcagtgtactt
acatataataaatgaataaaatctttataaaaaataaaaaatgtctaatc
tacaactagagggggaataatagcaactggctgggaaaaaagtaaaaaca
aaggcttgcggttcatggaagaaaaacaatactagggagtttgcctcggt
agtcaagttgctgaacccgacaggatttaaggatggccatccccattaag
agcaagtctttgcctctctcattgaaagcccagaatggtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49729154_49730338
seq2: B6Ng01-209O20.b_46_1241

seq1  GAATTCACTTTGTGGATCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGATCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCCTGGCA  100

seq1  TAGTCTATTTTCAAAGAAATTGCTTAGTGAATATATTAGTTAGGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATTTTCAAAGAAATTGCTTAGTGAATATATTAGTTAGGGTTTCT  150

seq1  TTTGCTGTGGAGAGACATCATAACTACAGTAACTCCTATAAAGAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGGAGAGACATCATAACTACAGTAACTCCTATAAAGAAAAATA  200

seq1  TTTTATTTTGGCTGACTTGCAGATGCAGAGTTTTTGCAAATTGTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGGCTGACTTGCAGATGCAGAGTTTTTGCAAATTGTCTTCAT  250

seq1  GGTGGGAAACATAGTGGCATGCAGGTAGACATGGTGCTCCAGAGATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAAACATAGTGGCATGCAGGTAGACATGGTGCTCCAGAGATAGCT  300

seq1  GAGATTTCTACCTTTGGATCAGCAGGCACCAGGAAGAAAGAATGACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTACCTTTGGATCAGCAGGCACCAGGAAGAAAGAATGACAGTG  350

seq1  GGTTTCACTTGAGCATCTGAAACCTCAAGGCCCAATCCAATGACATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACTTGAGCATCTGAAACCTCAAGGCCCAATCCAATGACATACTT  400

seq1  CTTCCAACAAAACCACACCTACTCCAACAAGACCACACCATCTAATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACAAAACCACACCTACTCCAACAAGACCACACCATCTAATGTCA  450

seq1  CTCCCTATATGTCTGTGTATGCTATTTTCAGTCAAACCACCAGAGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATATGTCTGTGTATGCTATTTTCAGTCAAACCACCAGAGTGAAT  500

seq1  ATAAGATGCATTTTGGGGTGTCTTAAGGTTTCCATTGCTGTGAAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGCATTTTGGGGTGTCTTAAGGTTTCCATTGCTGTGAAAAGATA  550

seq1  ACATGACCAAGGCAACTCTTAAAAGAACAATATTTAATCAAAGCTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCAAGGCAACTCTTAAAAGAACAATATTTAATCAAAGCTGGCTT  600

seq1  ACAGGTTCAGAGACTCAGAGCATAATCAAGAGAGAAAGTACAGCAGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGACTCAGAGCATAATCAAGAGAGAAAGTACAGCAGGGTC  650

seq1  CAGGCAGGTACGGCACAGGAGGAGCTGAGAGTTCTACATTTTGTTCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTACGGCACAGGAGGAGCTGAGAGTTCTACATTTTGTTCAGGA  700

seq1  GGCAAACAGTAGAAGACTGGCTCCCAGATGACTAGAAAGAGGGTCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAGTAGAAGACTGGCTCCCAGATGACTAGAAAGAGGGTCTCAAA  750

seq1  TCCTACCCCAACAGAGACACACTTCCTCCAGCAAGGCCACACCTATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCAACAGAGACACACTTCCTCCAGCAAGGCCACACCTATTCAA  800

seq1  ACAAGGCTACACCTCCTAGTTGTGTACTCCCTCAGCCAAGCATATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTACACCTCCTAGTTGTGTACTCCCTCAGCCAAGCATATTCAAA  850

seq1  CCACCACACTGGAAA-TTTTTTTTCAAATTCAAACCAGTATA-GGGATAC  898
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  CCACCACACTGGAAATTTTTTTTTCAAATTCAAACCAGTATAGGGGATAC  900

seq1  CTGATGTGACTCCAATATTGAAGAGTTGAACAGTGAGTGGTTAAAGACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGACTCCAATATTGAAGAGTTGAACAGTGAGTGGTTAAAGACTT  950

seq1  CCATCCATTCTTCATAAAAACAAAACAAAACCAAAACAAAACATACTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATTCTTCATAAAAACAAAACAAAACCAAAACAAAACATACTTCT  1000

seq1  T-GGGTGAACAGTGTATCAGTAATTACCCTTGCTTTTGTCTCATGCTTAA  1047
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGGTGAACAGTGTATCAGTAATTACCCTTGCCTTTGTCTCATGCTTAA  1050

seq1  ATTTTATAATGTGTTCTAAATTTACAGCCTGTGGTAATGGACTTCAAACA  1097
       ||| |||||||| |||||  |||||||||||||||||||||||||||||
seq2  TTTTAATAATGTG-TCTAA--TTACAGCCTGTGGTAATGGACTTCAAACA  1097

seq1  TTCTTTGCATTTGTAACG-TTTGTTTCCA-GTATGGATTCCAGGAT-GAT  1144
      |  || ||||| |||||| |||| ||||| ||||||| | ||| || |||
seq2  TCTTTGGCATTGGTAACGATTTGATTCCAGGTATGGAATTCAGCATGGAT  1147

seq1  CTATAAGATTTGAGAACCAA--GTAATGGAT-TTTG-----AACATTCT  1185
      ||||||||  ||||||||||   |||||||| ||||      |||||||
seq2  CTATAAGACCTGAGAACCAAAGTTAATGGATATTTGTGAAACACATTCT  1196

seq1: chr7_49841402_49842421
seq2: B6Ng01-209O20.g_64_1093 (reverse)

seq1  GGCTTTCAATG-GAGA-GCAAAGACTTGCTCTTTAATGGTGAT-GCCATC  47
      ||||||||||| |||| |||||||||||||| ||||||| ||| ||||||
seq2  GGCTTTCAATGAGAGAGGCAAAGACTTGCTC-TTAATGGGGATGGCCATC  49

seq1  CTTAAAACTCCTGTCTGTGTCAGC-ACTTGACTACCG-TGCAAACTCCCT  95
      ||||||  ||||||| |  ||||| ||||||||||||  |||||||||||
seq2  CTTAAA--TCCTGTCGGGTTCAGCAACTTGACTACCGAGGCAAACTCCCT  97

seq1  AGTACTGTTTTTC-TCCATGAACCGC-AGCCTTTGTTTTTAC-TTTTTCC  142
      |||| |||||||| |||||||||||| ||||||||||||||| |||||||
seq2  AGTATTGTTTTTCTTCCATGAACCGCAAGCCTTTGTTTTTACTTTTTTCC  147

seq1  CAG-CAGTTGCTATTATT-CCCCTCTAGTTGTAGATTAGACATTTTTTAT  190
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCCAGTTGCTATTATTCCCCCTCTAGTTGTAGATTAGACATTTTTTAT  197

seq1  TTTTTAT-AAGA-TTTATTCATTTATTATATGTAAGTACACTGCAGCTGT  238
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAAGATTTTATTCATTTATTATATGTAAGTACACTGCAGCTGT  247

seq1  CTTTAGACACTCCAG-AAGAGGGAGTTAGATCTCCTTAGGGATGGTTGTG  287
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTAGACACTCCAGAAAGAGGGAGTTAGATCTCCTTAGGGATGGTTGTG  297

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCTTCAGAAGAGTAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCTTCAGAAGAGTAG  347

seq1  TCGGTGCTCTTAACCTCTGTGCATGGGGTTTATAATTCCCACAAAATAAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCTCTTAACCTCTGTGCATGGGGTTTATAATTCCCACAAAATAAC  397

seq1  TCATAGAGGCATCTATACTGTCATATTTCTGCCTCTCCACTTACTGCTGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGGCATCTATACTGTCATATTTCTGCCTCTCCACTTACTGCTGC  447

seq1  TCTGTCTTCCACACTGAGAGGCTCCATGCTCTTTGGAAATGAAGGTGATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCCACACTGAGAGGCTCCATGCTCTTTGGAAATGAAGGTGATC  497

seq1  AGAAAGGTAAGCTCTGTTTGTTTTTGTAGACCCTTGGGCCCAAAGTAGGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAAGCTCTGTTTGTTTTTGTAGACCCTTGGGCCCAAAGTAGGT  547

seq1  TTCAGGAAGTCCCAGTCCTACTGATTTGTACACAAGGTCATGTTGAACAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGTCCCAGTCCTACTGATTTGTACACAAGGTCATGTTGAACAG  597

seq1  TAATTTAATGTCTACTTCCTGACACATGGATTTTGTCACAAGATGTGAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATGTCTACTTCCTGACACATGGATTTTGTCACAAGATGTGAAA  647

seq1  TTTGACATGTCCACCTTCATAATACCACGCACATCTGGAAAACCTCTGCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGTCCACCTTCATAATACCACGCACATCTGGAAAACCTCTGCA  697

seq1  TCTTCAAAACTCCTATTACACCCAATAGTTGAATTTCCTTGAATCACATC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAACTCCTATTACACCCAATAGTTGAATTTCCTTGAATCACATC  747

seq1  TTTGCAGTTGGTGGTCATGAAAAGTTAAAAGGATTGTAATCAAATATTAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTGGTGGTCATGAAAAGTTAAAAGGATTGTAATCAAATATTAC  797

seq1  TGAAGGATGACATCTATCACCTTCTCTCTACCAATTTCTTAACTATTGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATGACATCTATCACCTTCTCTCTACCAATTTCTTAACTATTGGG  847

seq1  GAAAGTTATCACACAAAACAGAATGTGGAATGCAATGGACAAAACTTCTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTATCACACAAAACAGAATGTGGAATGCAATGGACAAAACTTCTA  897

seq1  GGAACTAGACCTTCAGGTTTCCACTAGCCTTCCCACTGCATCCCAAAACC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGACCTTCAGGTTTCCACTAGCCTTCCCACTGCATCCCAAAACC  947

seq1  AATGCCTCTGCGTGTACCATGGACGGAGATATTATAAGCACCACACCCTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCTGCGTGTACCATGGACGGAGATATTATAAGCACCACACCCTT  997

seq1  CCATTGCCAGGGCTACTCCTTCCTAGGGAATTC  1020
      |||||||||||||||||||||||||||||||||
seq2  CCATTGCCAGGGCTACTCCTTCCTAGGGAATTC  1030