BAC Information

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BAC

Clone NameB6Ng01-209P18
Chromosome7 (Build37)
Map Location 147,088,191 - 147,088,961
singlet/doubletsinglet
Overlap geneKndc1
Upstream geneBnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229
Downstream geneUtf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P18.bB6Ng01-209P18.g
ACCGA028447GA028448
length1,163775
definitionB6Ng01-209P18.b B6Ng01-209P18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagcccatggtctgctgaaggactttctaggatgttatatcct
gtcctatgctaagactactacttctaagacatcttttgcctccaaatttt
tatctatataatatgttgctctgacaaagctatggaaatattcctatgct
tatcattaacaaaatgggcagtatgtagctgctgatctaaagctatggta
gatacctttttaaagtttgtattctcagatttttaaaaccaaggatcatt
ttctaactctaataggcagcaaaacataagcaggtctcttacaaaaacat
aacagtagattccttatctaaattaggatctacacaattagttaattgac
aagaattacaatgaatataaaaagacttgccaagattggcgatcttaact
cttaaaattatctaacaataagcatataggtaaggtacacaaactttcat
agctataaggagctggcctgaatggccaaaaacagtgtctatgacaaaag
catcttgtacattctctgtaccagtcagcttttttagttgtttgtatttt
aagttggcaccaggttggtactccttgctgcagcccatggtggagatacg
aagtttctttatctgtttgtaagtggctgctctcccatttctcctctttt
gtccactcaacacagctttctggtcaccactgtcagggcactcacaggtc
acaggtcagcctgtcacattggaagctagcatgctcttgttgcattctgt
ggaaaaaaacagaaacattcccccttttctccatattaagtatctgaaca
ggatcatggcatgtgccaataagtggatcctttttatctgccctagacat
tatatctagtttttttgtatttaaataaaaatgtgacttaaataatgtgc
acagggatataatttccccccttctgtttttaagttttacagtaccttgt
ctttgagattataaaatatctcagtaacatgtgtaacattaaatttgttg
acaaaacatctcaaatctttgggctgtatagccagtttttaaatttgatt
agaccacagcagcaaaaaaaaaaaatccaaccagggcatgactactatta
cttaagttgctttttcctggtaagtggttgtaattgaacaggacactaaa
acggggtactcaa
gaattcacttactgcaaagtcaaatcagatggcttctctgcctcaccaat
gacctgtgggaggaaccagaaaagggtatgcatggccaccacccttaaga
aacacctctgggggggggcggagagatagctcagtggttaaaagcccttg
ctgctcttggagagcacccaagttgggttcccagcatccacatagtggtt
caaaccatccttaactcgtttcaagggatcccatgccagctgctgtcctc
tgattgaaagagtttctctgttttatttgaaatagggtctgactgcattg
tccaagtgtcttagttaggattacgattgctatgatgaaacaccataacc
aaagcaacttgaggaggaaaagatttgtctgacttacactttcacgtcat
ggtccatcgctggaggaagtcgggacaggaaagaacctggatgcaggagc
tgatgcagaggccatggagggtgcttcttattggcttgctctttatggct
ttcctcggcctggttccttatagaacacaaacacactgtcccagagatgg
caccagctacgatgggctggggcctcccccatcaatcactaattaaagaa
actgccaagagccagatcttatggaagcatttttctcaatggcagttccc
tctttctcagataacttcagcttgcgccgagtcactgaccattctctcta
gtcttcacatctaagtccttcatagaatctgttttctttgtgttactaga
ctgtgggttgacaaccaaagttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147088191_147088961
seq2: B6Ng01-209P18.g_67_841

seq1  GAATTCACTTACTGCAAAGTCAAATCAGATGGCTTCTCTGCCTCACCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACTGCAAAGTCAAATCAGATGGCTTCTCTGCCTCACCAAT  50

seq1  GACCTGTGGGAGGAACCAGAAAAGGGTATGCATGGCCACCACCCTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGGGAGGAACCAGAAAAGGGTATGCATGGCCACCACCCTTAAGA  100

seq1  AACACCTCTGGGGGGGGGCGGAGAGATAGCTCAGTGGTTAAAAGCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCTGGGGGGGGGCGGAGAGATAGCTCAGTGGTTAAAAGCCCTTG  150

seq1  CTGCTCTTGGAGAGCACCCAAGTTGGGTTCCCAGCATCCACATAGTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGGAGAGCACCCAAGTTGGGTTCCCAGCATCCACATAGTGGTT  200

seq1  CAAACCATCCTTAACTCGTTTCAAGGGATCCCATGCCAGCTGCTGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATCCTTAACTCGTTTCAAGGGATCCCATGCCAGCTGCTGTCCTC  250

seq1  TGATTGAAAGAGTTTCTCTGTTTTATTTGAAATAGGGTCTGACTGCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAGAGTTTCTCTGTTTTATTTGAAATAGGGTCTGACTGCATTG  300

seq1  TCCAAGTGTCTTAGTTAGGATTACGATTGCTATGATGAAACACCATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGTCTTAGTTAGGATTACGATTGCTATGATGAAACACCATAACC  350

seq1  AAAGCAACTTGAGGAGGAAAAGATTTGTCTGACTTACACTTTCACGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTTGAGGAGGAAAAGATTTGTCTGACTTACACTTTCACGTCAT  400

seq1  GGTCCATCGCTGGAGGAAGTCGGGACAGGAAAGAACCTGGATGCAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATCGCTGGAGGAAGTCGGGACAGGAAAGAACCTGGATGCAGGAGC  450

seq1  TGATGCAGAGGCCATGGAGGGTGCTTCTTATTGGCTTGCTCTTTATGGC-  499
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGATGCAGAGGCCATGGAGGGTGCTTCTTATTGGCTTGCTCTTTATGGCT  500

seq1  TTCCTCGGCCTGGTTCCTTATAGAACACAAACACACTGTCCCAGAGATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGGCCTGGTTCCTTATAGAACACAAACACACTGTCCCAGAGATGG  550

seq1  CACCAGCTACGATGGGCTGGGGCCTCCCCCATCAATCACTAATT-AAGAA  598
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACCAGCTACGATGGGCTGGGGCCTCCCCCATCAATCACTAATTAAAGAA  600

seq1  ACTGCCAAGAGCCAGATCTTATGGAAGCA-TTTTCTCAATGGCAGTTCCC  647
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTGCCAAGAGCCAGATCTTATGGAAGCATTTTTCTCAATGGCAGTTCCC  650

seq1  TC-TTCTCAGATAACTTCAGCTTGCGCCGAGTTCACTGA-CATTCTCTCT  695
      || |||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TCTTTCTCAGATAACTTCAGCTTGCGCCGAG-TCACTGACCATTCTCTCT  699

seq1  AGTCTTCACATCT-AGTCCTTCAGAGAATCTGTTTTCCTTGGTGTTACTA  744
      ||||||||||||| ||||||||| |||||||||||| ||| |||||||||
seq2  AGTCTTCACATCTAAGTCCTTCATAGAATCTGTTTT-CTTTGTGTTACTA  748

seq1  GACTGT-GGTTGACAAACCAAAGTTGTA  771
      |||||| ||||||| |||||||||||||
seq2  GACTGTGGGTTGAC-AACCAAAGTTGTA  775