BAC Information

Click to search

BAC

Clone NameB6Ng01-212D04
Chromosome7 (Build37)
Map Location 106,687,700 - 106,816,551
singlet/doubletdoublet
Overlap geneArrb1, EG245190, Slco2b1
Upstream geneA630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630
Downstream geneOlfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212D04.bB6Ng01-212D04.g
ACCGA030057GA030058
length446738
definitionB6Ng01-212D04.b B6Ng01-212D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,816,113 - 106,816,551)(106,687,700 - 106,688,433)
sequence
ctctccaagtccccttgttctctaggtcctagctctgtcctacatccagg
gagcctcctggcccacggctgcccagggttcattttctctggagacctga
gattctctgcccccggcgtttggacatttgatccagtcctcatccattaa
acagtatttacaacgttttgacaaaatgaccagtgtgccctgggctctag
agataaagcaactgatactgtaaaaattactactctgaaataaaatgggg
gtgagctggcaataaaacggctaaatgaataaaatgtacaattggttcgg
tacaatgctctcaggaaacacactctagccgagaggcatcagggcaggag
tgggcatctgagttaaggacaaagaaaggaaaagaccccaagccccaggg
ctgggttcaaaaagagcaaagaacaagaatgggaaagggaacccgg
gaattctttccataatttagtaacaggaattgctgttcccattttaaagg
tgtggaaagaggaagcgtgttcaccaccagttagcatctgaacagaggtt
cctctgtccaccaaggcctctctgttgctgtataagtctacccagaggga
aaggggcttgtcctattcacagctgacctttcaactgcccccagctggtc
caccaactctaaaagtgaccagaaaggtcatcttgaaacaacaggaggga
tggcgtggaatttcctttgcagcagacgttgatggactccccacccccgc
ccccatagaaccctcttccccacaaccccatcccagggagggagggaggg
agggtgctgtaatggggcaatcactggctctctgtgaaccttggctgtct
gtcttgaagtggttaagccttgggtgaaccatcttggctagaacatgggg
aagtcctgtggctttggcagggttgctcctggtttgctgctgggcgtggc
tgtgagcctggcccggtgtccctgaatcccagctggctgctgggctgcag
actccttgaatggcttgtttcctttcaagtctggacctcctggcccgaga
gactgaaacctctagctggcatggggtcaggggtcctttccccctggaca
tttcccacgggtctgtgttgatggaagacagcaacaggggaaggtcagag
tggtctttgtgacctcaaccgggctctcctctctactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_106816113_106816551
seq2: B6Ng01-212D04.b_42_493 (reverse)

seq1  CCGGGT--CCTTTCC--ATCTTGT--CTTGCTC-TTTTGAA-CCAGCC--  40
      ||||||  |||||||   ||||||   |||||| ||||||| ||||||  
seq2  CCGGGTTCCCTTTCCCATTCTTGTTCTTTGCTCTTTTTGAACCCAGCCCT  50

seq1  TGGGCTT-GGGTCTTT--CCTTCTTTGTCCTTAACTCAGATGCCCACTCC  87
       |||||| ||||||||  | ||||||||||||||||||||||||||||||
seq2  GGGGCTTGGGGTCTTTTCCTTTCTTTGTCCTTAACTCAGATGCCCACTCC  100

seq1  TGCCCTGATGCCTCTCGGCTAGAGTGTGTTTCCTGAGAGCATTGTACCGA  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGATGCCTCTCGGCTAGAGTGTGTTTCCTGAGAGCATTGTACCGA  150

seq1  ACCAATTGTACATTTTATTCATTTAGCCGTTTTATTGCCAGCTCACCCCC  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTGTACATTTTATTCATTTAGCCGTTTTATTGCCAGCTCACCCCC  200

seq1  ATTTTATTTCAGAGTAGTAATTTTTACAGTATCAGTTGCTTTATCTCTAG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCAGAGTAGTAATTTTTACAGTATCAGTTGCTTTATCTCTAG  250

seq1  AGCCCAGGGCACACTGGTCATTTTGTCAAAACGTTGTAAATACTGTTTAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGGCACACTGGTCATTTTGTCAAAACGTTGTAAATACTGTTTAA  300

seq1  TGGATGAGGACTGGATCAAATGTCCAAACGCCGGGGGCAGAGAATCTCAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGGACTGGATCAAATGTCCAAACGCCGGGGGCAGAGAATCTCAG  350

seq1  GTCTCCAGAGAAAATGAACCCTGGGCAGCCGTGGGCCAGGAGGCTCCCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAGAAAATGAACCCTGGGCAGCCGTGGGCCAGGAGGCTCCCTG  400

seq1  GATGTAGGACAGAGCTAGGACCTAGAGAACAAGGGGACTTGGAGAGGAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGACAGAGCTAGGACCTAGAGAACAAGGGGACTTGGAGAGGAAT  450

seq1  TC  439
      ||
seq2  TC  452

seq1: chr7_106687700_106688433
seq2: B6Ng01-212D04.g_64_801

seq1  GAATTCTTTCCATAATTTAGTAACAGGAATTGCTGTTCCCATTTTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATAATTTAGTAACAGGAATTGCTGTTCCCATTTTAAAGG  50

seq1  TGTGGAAAGAGGAAGCGTGTTCACCACCAGTTAGCATCTGAACAGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGAGGAAGCGTGTTCACCACCAGTTAGCATCTGAACAGAGGTT  100

seq1  CCTCTGTCCACCAAGGCCTCTCTGTTGCTGTATAAGTCTACCCAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCACCAAGGCCTCTCTGTTGCTGTATAAGTCTACCCAGAGGGA  150

seq1  AAGGGGCTTGTCCTATTCACAGCTGACCTTTCAACTGCCCCCAGCTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTTGTCCTATTCACAGCTGACCTTTCAACTGCCCCCAGCTGGTC  200

seq1  CACCAACTCTAAAAGTGACCAGAAAGGTCATCTTGAAACAACAGGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTCTAAAAGTGACCAGAAAGGTCATCTTGAAACAACAGGAGGGA  250

seq1  TGGCGTGGAATTTCCTTTGCAGCAGACGTTGATGGACTCCCCACCCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGGAATTTCCTTTGCAGCAGACGTTGATGGACTCCCCACCCCCGC  300

seq1  CCCCATAGAACCCTCTTCCCCACAACCCCATCCCAGGGAGGGAGGGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGAACCCTCTTCCCCACAACCCCATCCCAGGGAGGGAGGGAGGG  350

seq1  AGGGTGCTGTAATGGGGCAATCACTGGCTCTCTGTGAACCTTGGCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTGTAATGGGGCAATCACTGGCTCTCTGTGAACCTTGGCTGTCT  400

seq1  GTCTTGAAGTGGTTAAGCCTTGGGTGAACCATCTTGGCTAGAACATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAGTGGTTAAGCCTTGGGTGAACCATCTTGGCTAGAACATGGGG  450

seq1  AAGTCCTGTGGCTTTGGCAGGGTTGCTCCTGGTTTGCTGCTGGGCGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGTGGCTTTGGCAGGGTTGCTCCTGGTTTGCTGCTGGGCGTGGC  500

seq1  TGTGAGCCTGGCCCGGTGTCCCTGAATCCCAGCTGGCTGCTGGGCTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCTGGCCCGGTGTCCCTGAATCCCAGCTGGCTGCTGGGCTGCAG  550

seq1  ACTCCTTGAATGGCTTGTTTCCTTTCAAGTCTGGACCTCCTGGCCCGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGAATGGCTTGTTTCCTTTCAAGTCTGGACCTCCTGGCCCGAGA  600

seq1  GACTGAAACCTCTAGCTGGCATGGGGTCAGGGGTCC-TTCCCCCTGGACA  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACTGAAACCTCTAGCTGGCATGGGGTCAGGGGTCCTTTCCCCCTGGACA  650

seq1  TTTCCCACGGG-CTGTGTTGATGGAAGACAGCAACA-GGGAAGGTCAGAG  697
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TTTCCCACGGGTCTGTGTTGATGGAAGACAGCAACAGGGGAAGGTCAGAG  700

seq1  TGG-CCTTGTGACCTCAACCGGGCTCTCCTCTCTACTG  734
      ||| | ||||||||||||||||||||||||||||||||
seq2  TGGTCTTTGTGACCTCAACCGGGCTCTCCTCTCTACTG  738