BAC Information

Click to search

BAC

Clone NameB6Ng01-212E03
Chromosome7 (Build37)
Map Location 6,175,049 - 6,343,646
singlet/doubletdoublet
Overlap geneZfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp
Downstream geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212E03.bB6Ng01-212E03.g
ACCGA030099GA030100
length1,089392
definitionB6Ng01-212E03.b B6Ng01-212E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,342,562 - 6,343,646)(6,175,049 - 6,175,446)
sequence
gaattctcccagcagagaggaactgggggctactgagatcctgttcacag
ctttcagacatccgttctaagtcaaacatcagacacctgaatggcatgtt
tgtgactcaccccacacttctactgtatgattcgagttactaccataact
ctttgctcctctgtcacaacccctccacaggaaatagtgtgttcaagtag
aaatgtctctactctccaaggagtcataaacactgcctcaagtttatccc
caacttaacctctgtgtctcagacgttagcctctgacttgtggcatacat
ataaacacagacattggtatattcatctaaacctaaacatacacaggtac
acacacataaacacatgccaacttaccctgtgtgtcgtgaacactgcacc
accctcccaggctgcccgtaccatggagcacttaggtctatggggcagga
gctgttttcttagcactgccaggaataatgtctcctcacttaagtccttt
ggagggaactccttggtctcctgcatggccttcaagtctaaaagatatta
acaaagcaaacagcccgcattatgtgttgcatgaggggtgggggtgaaca
tgtggtgcacagatacacatgctggcaaaatacccatacacacaagataa
ttcttaaaaataaatgaataaataaagggctagagagatggctcagctgt
aaagaggacttgctgctcttccagaggacctgagttcaattcccaacacc
tgaatggtggctcacaattgtaactccaactccagaagatctgctgtcct
cttctaccctttgcaggcatcagcatgcatgcgccgcagtgtccagacat
gcacaggcaaagcacccacatacataaaactaagttatatagacactaaa
taaataaataaataacaaagatgactcggttagactgacagggaaaggag
gcattgcagagagaagcaaatgatctgcagagggcctggagccatgctgg
agaaggagagagaggacgggagattcttgagtctcgagggaatgagcctg
gctggcagcaatctatgctgcccacacttcctcacactc
caggacagtcaaagctacacagtagaaataaataaacatcaattcctgaa
ggtggcacacacctttaatcccagcactctggaggcagaggcagggagat
ttctgagttcgaggccagcctggtctacaaagtgagttccaagacagcca
gggttacacagagaaaccctgtctcatttaaatgtaaaatatttaaatgt
attagatttttaacaccatatgagcaagtggaggatgaagtggttatttt
ttgtttgtttgtgggtttttcttctttttaatttatttttgtagagctgg
gactataacaaagattctaggcaagcaccctactaactgagctatgtctc
caactttctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6342562_6343646
seq2: B6Ng01-212E03.b_46_1134 (reverse)

seq1  GAGTGTGAGGAAGTG-GGGCAGCAT-GACTGCTGCCAGCCCAGCTCATTC  48
      ||||||||||||||| ||||||||| || |||||||||||  ||||||||
seq2  GAGTGTGAGGAAGTGTGGGCAGCATAGATTGCTGCCAGCCAGGCTCATTC  50

seq1  CCTC-AGACTC-AGAATCTCCCCGTCCTCTCTCTCC-TCTCCAGCATGGC  95
      |||| |||||| ||||||| |||||||||||||||| |||||||||||||
seq2  CCTCGAGACTCAAGAATCT-CCCGTCCTCTCTCTCCTTCTCCAGCATGGC  99

seq1  TCCAGGCCCTCTGCAGATCATTTGCTTCTCTCTGC-ATGCCTCCTTTCCC  144
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCAGGCCCTCTGCAGATCATTTGCTTCTCTCTGCAATGCCTCCTTTCCC  149

seq1  TGTCAGTCTTACCGAGTCATCTTTGTTATTTATTTATTTATTTAGTGTCT  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTAACCGAGTCATCTTTGTTATTTATTTATTTATTTAGTGTCT  199

seq1  ATATAACTTAGTTTTATGTATGTGGGTGCTTTGCCTGTGCATGTCTGGAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTAGTTTTATGTATGTGGGTGCTTTGCCTGTGCATGTCTGGAC  249

seq1  ACTGCGGCGCATGCATGCCTGATGCCTGCAAAGGGTAGAAGAGGACAGCA  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGCGGCGCATGCATG-CTGATGCCTGCAAAGGGTAGAAGAGGACAGCA  298

seq1  GATCTTCTGGAGTTGGAGTTACAATTGTGAGCCACCATTCAGGTGTTGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTGGAGTTGGAGTTACAATTGTGAGCCACCATTCAGGTGTTGGG  348

seq1  AATTGAACTCAGGTCCTCTGGAAGAGCAGCAAGTCCTCTTTACAGCTGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGGTCCTCTGGAAGAGCAGCAAGTCCTCTTTACAGCTGAG  398

seq1  CCATCTCTCTAGCCCTTTATTTATTCATTTATTTTTAAGAATTATCTTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCTAGCCCTTTATTTATTCATTTATTTTTAAGAATTATCTTGT  448

seq1  GTGTATGGGTATTTTGCCAGCATGTGTATCTGTGCACCACATGTTCACCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGGTATTTTGCCAGCATGTGTATCTGTGCACCACATGTTCACCC  498

seq1  CCACCCCTCATGCAACACATAATGCGGGCTGTTTGCTTTGTTAATATCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTCATGCAACACATAATGCGGGCTGTTTGCTTTGTTAATATCTT  548

seq1  TTAGACTTGAAGGCCATGCAGGAGACCAAGGAGTTCCCTCCAAAGGACTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTGAAGGCCATGCAGGAGACCAAGGAGTTCCCTCCAAAGGACTT  598

seq1  AAGTGAGGAGACATTATTCCTGGCAGTGCTAAGAAAACAGCTCCTGCCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGAGACATTATTCCTGGCAGTGCTAAGAAAACAGCTCCTGCCCC  648

seq1  ATAGACCTAAGTGCTCCATGGTACGGGCAGCCTGGGAGGGTGGTGCAGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTAAGTGCTCCATGGTACGGGCAGCCTGGGAGGGTGGTGCAGTG  698

seq1  TTCACGACACACAGGGTAAGTTGGCATGTGTTTATGTGTGTGTACCTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGACACACAGGGTAAGTTGGCATGTGTTTATGTGTGTGTACCTGTG  748

seq1  TATGTTTAGGTTTAGATGAATATACCAATGTCTGTGTTTATATGTATGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGGTTTAGATGAATATACCAATGTCTGTGTTTATATGTATGCC  798

seq1  ACAAGTCAGAGGCTAACGTCTGAGACACAGAGGTTAAGTTGGGGATAAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGAGGCTAACGTCTGAGACACAGAGGTTAAGTTGGGGATAAAC  848

seq1  TTGAGGCAGTGTTTATGACTCCTTGGAGAGTAGAGACATTTCTACTTGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGTGTTTATGACTCCTTGGAGAGTAGAGACATTTCTACTTGAA  898

seq1  CACACTATTTCCTGTGGAGGGGTTGTGACAGAGGAGCAAAGAGTTATGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATTTCCTGTGGAGGGGTTGTGACAGAGGAGCAAAGAGTTATGGT  948

seq1  AGTAACTCGAATCATACAGTAGAAGTGTGGGGTGAGTCACAAACATGCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCGAATCATACAGTAGAAGTGTGGGGTGAGTCACAAACATGCCA  998

seq1  TTCAGGTGTCTGATGTTTGACTTAGAACGGATGTCTGAAAGCTGTGAACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGTCTGATGTTTGACTTAGAACGGATGTCTGAAAGCTGTGAACA  1048

seq1  GGATCTCAGTAGCCCCCAGTTCCTCTCTGCTGGGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAGTAGCCCCCAGTTCCTCTCTGCTGGGAGAATTC  1089

seq1: chr7_6175049_6175446
seq2: B6Ng01-212E03.g_65_462

seq1  GAATTCCAGGACAGTCAAAGCTACACAGTAGAAATAAATAAACATCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCAAAGCTACACAGTAGAAATAAATAAACATCAATT  50

seq1  CCTGAAGGTGGCACACACCTTTAATCCCAGCACTCTGGAGGCAGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGTGGCACACACCTTTAATCCCAGCACTCTGGAGGCAGAGGCAG  100

seq1  GGAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGA  150

seq1  CAGCCAGGGTTACACAGAGAAACCCTGTCTCATTTAAATGTAAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGTTACACAGAGAAACCCTGTCTCATTTAAATGTAAAATATTT  200

seq1  AAATGTATTAGATTTTTAACACCATATGAGCAAGTGGAGGATGAAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTAGATTTTTAACACCATATGAGCAAGTGGAGGATGAAGTGGT  250

seq1  TATTTTTTGTTTGTTTGTGGGTTTTTCTTCTTTTTAATTTATTTTTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGTTTGTTTGTGGGTTTTTCTTCTTTTTAATTTATTTTTGTAG  300

seq1  AGCTGGGACTATAACAAAGATTCTAGGCAAGCACCCTACTAACTGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGACTATAACAAAGATTCTAGGCAAGCACCCTACTAACTGAGCTA  350

seq1  TGTCTCCAACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  398