BAC Information

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BAC

Clone NameB6Ng01-213M07
Chromosome7 (Build37)
Map Location 13,183,677 - 13,366,559
singlet/doubletdoublet
Overlap geneEG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875
Upstream geneLOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik
Downstream geneLOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213M07.bB6Ng01-213M07.g
ACCGA031200GA031201
length3671,062
definitionB6Ng01-213M07.b B6Ng01-213M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,366,193 - 13,366,559)(13,183,677 - 13,184,731)
sequence
agtttactctctgaaaccttaactgttttcagccagtctgttcagtgcct
tcctcccagtctctccctctctgaagccttgcctcagggttgtggggttt
ttagctctgtctgcccacagtaggtctgcgcacttgtttcttgactgttc
atggtcttgagtcttcatttgtgcaggatccccattttaagtctccatct
cctcagtttctctgtctcatctctggacttgtagactagatctttactgt
ctttgggtctcaaggtgcctgagagtttttgtttcttaagcctgtgtatt
tcagtctttgtctccgcctctcaggttctggtggtcctaggttccttttt
gggggtgggtgggggtg
gaattcatgtacaggtggacatgaggaaccccagatttggaatttcctag
aaacttggaaccactagaacaacagttatctctgcatttagagaactcac
ttggagatcctgcttcaactggaccatcattttgtttcctgaagaggctt
gagggtctatcaagcctacatgcaccaagtggaatacacctgcaggagtc
ttcttcccttggaaaatgtcaaattgtgtcaccaaatctccattggcatc
aaacataatcttatttccatcagaagtcttgaagtacacatttctgaggt
tatgaagcagctagggaaggaagagacatattgaacactggacagggtct
gtccaaggactacagcaaatagcctcagcagtaatccactaggcatatga
cagcttaaggttctatgatattttcaggaactcacaaaaaatgtgctagt
tttactaaattaataattaataattgattcatttcacatttaaacatatt
acactgtgagagagacagagagagagagagagaatctcaaactatgtcac
acacattggagattttagagacacccttggcaatgttgtattccactgcc
ctgtgatacacaggaattgaatttatgcttggggccaagtgcctctaccc
actgagacatctcaccaaccttaaaattaaacccaaaacatcacaatgtg
atgcttgctccaaggtctcatttggatatgcattactatcttaaacttcc
catcatacttgttagactccaaaccctagcaagccttccacaaacaggcc
ccagcccacctaagcctcccaatcactctgacacatctatcacactcctt
cagccccacactgtggttcatcttatttgtctccattctagggtgttggc
aacatgttgtccctaccatctgtaatcctatcacatttttcccataatga
gacttctttttcctttgattcagacctcaggtattttccggacagatcag
aactttctcaggctttactcatccttttacttgcttcatcacccttccct
tactttacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13366193_13366559
seq2: B6Ng01-213M07.b_49_415 (reverse)

seq1  CACCCCCACCCACCCCCAAAAAGGAACCTAGGACCACCAGAACCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCCACCCCCAAAAAGGAACCTAGGACCACCAGAACCTGAGAG  50

seq1  GCGGAGACAAAGACTGAAATACACAGGCTTAAGAAACAAAAACTCTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGACAAAGACTGAAATACACAGGCTTAAGAAACAAAAACTCTCAGG  100

seq1  CACCTTGAGACCCAAAGACAGTAAAGATCTAGTCTACAAGTCCAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGACCCAAAGACAGTAAAGATCTAGTCTACAAGTCCAGAGATG  150

seq1  AGACAGAGAAACTGAGGAGATGGAGACTTAAAATGGGGATCCTGCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAAACTGAGGAGATGGAGACTTAAAATGGGGATCCTGCACAAA  200

seq1  TGAAGACTCAAGACCATGAACAGTCAAGAAACAAGTGCGCAGACCTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCAAGACCATGAACAGTCAAGAAACAAGTGCGCAGACCTACTG  250

seq1  TGGGCAGACAGAGCTAAAAACCCCACAACCCTGAGGCAAGGCTTCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGACAGAGCTAAAAACCCCACAACCCTGAGGCAAGGCTTCAGAGA  300

seq1  GGGAGAGACTGGGAGGAAGGCACTGAACAGACTGGCTGAAAACAGTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGACTGGGAGGAAGGCACTGAACAGACTGGCTGAAAACAGTTAAG  350

seq1  GTTTCAGAGAGTAAACT  367
      |||||||||||||||||
seq2  GTTTCAGAGAGTAAACT  367

seq1: chr7_13183677_13184731
seq2: B6Ng01-213M07.g_66_1127

seq1  GAATTCATGTACAGGTGGACATGAGGAACCCCAGATTTGGAATTTCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTACAGGTGGACATGAGGAACCCCAGATTTGGAATTTCCTAG  50

seq1  AAACTTGGAACCACTAGAACAACAGTTATCTCTGCATTTAGAGAACTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGAACCACTAGAACAACAGTTATCTCTGCATTTAGAGAACTCAC  100

seq1  TTGGAGATCCTGCTTCAACTGGACCATCATTTTGTTTCCTGAAGAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATCCTGCTTCAACTGGACCATCATTTTGTTTCCTGAAGAGGCTT  150

seq1  GAGGGTCTATCAAGCCTACATGCACCAAGTGGAATACACCTGCAGGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTATCAAGCCTACATGCACCAAGTGGAATACACCTGCAGGAGTC  200

seq1  TTCTTCCCTTGGAAAATGTCAAATTGTGTCACCAAATCTCCATTGGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTTGGAAAATGTCAAATTGTGTCACCAAATCTCCATTGGCATC  250

seq1  AAACATAATCTTATTTCCATCAGAAGTCTTGAAGTACACATTTCTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATCTTATTTCCATCAGAAGTCTTGAAGTACACATTTCTGAGGT  300

seq1  TATGAAGCAGCTAGGGAAGGAAGAGACATATTGAACACTGGACAGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCAGCTAGGGAAGGAAGAGACATATTGAACACTGGACAGGGTCT  350

seq1  GTCCAAGGACTACAGCAAATAGCCTCAGCAGTAATCCACTAGGCATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGACTACAGCAAATAGCCTCAGCAGTAATCCACTAGGCATATGA  400

seq1  CAGCTTAAGGTTCTATGATATTTTCAGGAACTCACAAAAAATGTGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAGGTTCTATGATATTTTCAGGAACTCACAAAAAATGTGCTAGT  450

seq1  TTTACTAAATTAATAATTAATAATTGATTCATTTCACATTTAAACATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAATTAATAATTAATAATTGATTCATTTCACATTTAAACATATT  500

seq1  ACACTGTGAGAGAGACAGAGAGAGAGAGAGAGAATCTCAAACTATGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAGAGAGACAGAGAGAGAGAGAGAGAATCTCAAACTATGTCAC  550

seq1  ACACATTGGAGATTTTAGAGACACCCTTGGCAATGTTGTATTCCACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGGAGATTTTAGAGACACCCTTGGCAATGTTGTATTCCACTGCC  600

seq1  CTGTGATACACAGGAATTGAATTTATGCTTGGGGCCAAGTGCCTCTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATACACAGGAATTGAATTTATGCTTGGGGCCAAGTGCCTCTACCC  650

seq1  ACTGAGACATCTCACCAACCTTAAAATTAAACCCAAAACATCACAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACATCTCACCAACCTTAAAATTAAACCCAAAACATCACAATGTG  700

seq1  ATGCTTGCTCCAAGGTCTCATTTGGATATGCATTACTATCTTAAACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCTCCAAGGTCTCATTTGGATATGCATTACTATCTTAAACTTCC  750

seq1  CATCATACTTGTTAGACTCCAAACCCTAGCAAGCCTTCCACAAACAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACTTGTTAGACTCCAAACCCTAGCAAGCCTTCCACAAACAGGCC  800

seq1  CCAGCCCACCTAAGCCTCCCAATCACTCTGACACATCTATCACACTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCACCTAAGCCTCCCAATCACTCTGACACATCTATCACACTCCTT  850

seq1  CAGCCCCACACTGTGGTTCATCTTATTTGTCTCCATTCTAGGGTGTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACACTGTGGTTCATCTTATTTGTCTCCATTCTAGGGTGTTGGC  900

seq1  -ACATGTTGTCCCTACCATCTGTAATCCTATCACA-TTTTCCCATAATGA  948
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACATGTTGTCCCTACCATCTGTAATCCTATCACATTTTTCCCATAATGA  950

seq1  GACTTCTTTT--CCTTGATTCAGACCTCAGGTA-TTTCCGGACAGA-CAG  994
      ||||||||||  | ||||||||||||||||||| |||||||||||| |||
seq2  GACTTCTTTTTCCTTTGATTCAGACCTCAGGTATTTTCCGGACAGATCAG  1000

seq1  AAC-TTCTCAGGCCTTACTCATCCTTTTACTTGC-TCATCACCCCTTCAC  1042
      ||| ||||||||| |||||||||||||||||||| |||||| |||||| |
seq2  AACTTTCTCAGGCTTTACTCATCCTTTTACTTGCTTCATCA-CCCTTCCC  1049

seq1  TTACTTTACATCT  1055
      |||||||||||||
seq2  TTACTTTACATCT  1062