BAC Information

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BAC

Clone NameB6Ng01-214O11
Chromosome7 (Build37)
Map Location 12,345,456 - 12,463,331
singlet/doubletdoublet
Overlap geneEG628898, V1rg5
Upstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
Downstream geneV1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214O11.bB6Ng01-214O11.g
ACCGA032027GA032028
length1,1441,128
definitionB6Ng01-214O11.b B6Ng01-214O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,345,456 - 12,346,602)(12,462,199 - 12,463,331)
sequence
gaattcacagtcataaagaatagacaatgaattgtggtgttaggctcttt
gggggctgctttttatttagattttatataagtctatgagatggtatcat
acaaattggaaattggtctaatgccctcaaaggaacctctgtaaaatacc
ttcactctcatgtgaacaaggaagggtaactatcacaagtccatattgtc
tagctgacatccatacatatgattttgaattataaaaataatattttatt
aaaatattttaataaaagtctatatttttgagttaagatacacaggtttc
ccaactttaaaatgcataattaatcaggaggaggtaaatacacatatacc
ataattgatgtaaaaatcccaacacagaatcaacaaatataaagatgcat
atacacacaaacacacacacaaatcaaatgtgcatatgcaaaccctcaaa
tatttatgctcattatatactttaatcatttcaaaaaactgttctccatt
atattactgtaaacatggatgcaggtggagtgtgagggaggggatatcta
acactatgtatacttttaaaagtcatatggaaggtctatatatttttgtt
tgtagaagtacttattatgtacagagtattacaatattgcaattcatagg
gtatccacaaaaagaccaattgtgatatgcatgcacttgaggttttgatc
tgagtgtctggagacccctcaaacaatatagactattgtcactgcagttg
gttaaaaataataaaagtaaaaacaaaataaaagtaatgcatggcaagac
cctcttgtcaaagacaccatacactttcaagatggaacatatgaaattag
attcatattgaccaatatgttttctctgtgcttggtacattccttggcat
ctgagatgcactgagtttatctgaggaagtcattcatagtctttacctac
ctgtgaacactctgaacttacaacaaacactgacctcgtaagatactcct
gtgactacattggtcgaacaagttttattggggtaatcagtcactttcaa
gttgcattggggcttgctctacagcatagttcttaatctgtgaatctgac
tattaaaaacataatattcgagtattgtaagaccttcattagaa
gaattcaaaaaggtaacagtctcaagaaagcaaaaatcatatgttcatca
gagacatgtccttatgaacgtaaggggagagaaagtgatgattataaaaa
ctgaaaggagatcaaaacatgcaaacaaaagacatggaaatagaatcaag
gggatgttaatacagaaaagatgacattaaagtgaaaagtattataaagg
atacagagagatactgggtagtgtcaagagactggaaaaacaatgttgaa
gaatataatcaaaaataaatttgtttgaaaatataacgaaacctaataat
ctgcatggtaattaaaaatttaaaaacaaaaccaaaagagaattatggtt
atgaagtaaattttgttattggataatgataattcaatcaatgcgatctt
acatacttacactcaatacttaaaattaaatgaaattgtcatgtcatttc
tgcattatttgtcttctatgaattttattttattggaagtactagggatt
gaacccagagtctcatgcataaaagaccagcagtcttgtcctactctttc
aataggaattttaaatcagtatgttatgttgtagaagaattaaatttgca
attcttatttcttggtggtacagcagctatgtttttatattgttctaaga
ttaatttgcagaaaatagtcttgcttgtgttcctgaaattttgcttgaag
aacatggcataaatatacattcatctttgctttataaaatatattctgaa
ttttaaaagttttattcctaaaagaaatgcattttccaagacttatgctg
tatttcttatgctctattaattttgttactattataaatacctttctgaa
agaagttcttatagtgtctatgccctgagcatataaagtacattttcata
tggaagaggaatttctatttcaaccattaactccatttttaaatgattta
aaaagattcaaaatcaggtcttgaaaacatatctccttagttacttccag
agcagaatcactcaaaatagctgaaaagcatcatccacccatccatcaac
aaagaactgatgaagacaacaagtgttatacatacaattgacattaatga
cctttgttctttgaaacacagttgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12345456_12346602
seq2: B6Ng01-214O11.b_49_1192

seq1  GAATTCACAGTCATAAAGAATAGACAATGAATTGTGGTGTTAGGCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCATAAAGAATAGACAATGAATTGTGGTGTTAGGCTCTTT  50

seq1  GGGGGCTGCTTTTTATTTAGATTTTATATAAGTCTATGAGATGGTATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGCTTTTTATTTAGATTTTATATAAGTCTATGAGATGGTATCAT  100

seq1  ACAAATTGGAAATTGGTCTAATGCCCTCAAAGGAACCTCTGTAAAATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGGAAATTGGTCTAATGCCCTCAAAGGAACCTCTGTAAAATACC  150

seq1  TTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAGTCCATATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTCATGTGAACAAGGAAGGGTAACTATCACAAGTCCATATTGTC  200

seq1  TAGCTGACATCCATACATATGATTTTGAATTATAAAAATAATATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACATCCATACATATGATTTTGAATTATAAAAATAATATTTTATT  250

seq1  AAAATATTTTAATAAAAGTCTATATTTTTGAGTTAAGATACACAGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTAATAAAAGTCTATATTTTTGAGTTAAGATACACAGGTTTC  300

seq1  CCAACTTTAAAATGCATAATTAATCAGGAGGAGGTAAATACACATATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTAAAATGCATAATTAATCAGGAGGAGGTAAATACACATATACC  350

seq1  ATAATTGATGTAAAAATCCCAACACAGAATCAACAAATATAAAGATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATGTAAAAATCCCAACACAGAATCAACAAATATAAAGATGCAT  400

seq1  ATACACACAAACACACACACAAATCAAATGTGCATATGCAAACCCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAAACACACACACAAATCAAATGTGCATATGCAAACCCTCAAA  450

seq1  TATTTATGCTCATTATATACTTTAATCATTTCAAAAAACTGTTCTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGCTCATTATATACTTTAATCATTTCAAAAAACTGTTCTCCATT  500

seq1  ATATTACTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTGTAAACATGGATGCAGGTGGAGTGTGAGGGAGGGGATATCTA  550

seq1  ACACTATGTATACTTTTAAAAGTCATATGGAAGGTCTATATATTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGTATACTTTTAAAAGTCATATGGAAGGTCTATATATTTTTGTT  600

seq1  TGTAGAAGTACTTATTATGTACAGAGTATTACAATATTGCAATTCATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTACTTATTATGTACAGAGTATTACAATATTGCAATTCATAGG  650

seq1  GTATCCACAAAAAGACCAATTGTGATATGCATGCACTTGAGGTTTTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACAAAAAGACCAATTGTGATATGCATGCACTTGAGGTTTTGATC  700

seq1  TGAGTGTCTGGAGACCCCTCAAACAATATAGACTATTGTCACTGCAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCTGGAGACCCCTCAAACAATATAGACTATTGTCACTGCAGTTG  750

seq1  GTTAAAAATAATAAAAGTAAAAACAAAATAAAAGTAATGCATGGCAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATAATAAAAGTAAAAACAAAATAAAAGTAATGCATGGCAAGAC  800

seq1  CCTCTTGTCAAAGACACCATACACTTTCAAGATGGAACATATGAAATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTCAAAGACACCATACACTTTCAAGATGGAACATATGAAATTAG  850

seq1  ATTCATATTGACCAATATGTTTTCTCTGTGCTTGGTACATTCCTTGGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTGACCAATATGTTTTCTCTGTGCTTGGTACATTCCTTGGCAT  900

seq1  CTGAGATGCACTGAGTTTATCTGAGGAAGTCATTCATAGTC-TTACCTAC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAGATGCACTGAGTTTATCTGAGGAAGTCATTCATAGTCTTTACCTAC  950

seq1  CTGTGAACACTCTGAAC-TACAACAAACACTGACCTCGTAAGATACTCCT  998
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTGAACACTCTGAACTTACAACAAACACTGACCTCGTAAGATACTCCT  1000

seq1  GTGACTACATTGGTCGAACAAGTTTTATTGGGGTAATCAGTCACTTTCCA  1048
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGACTACATTGGTCGAACAAGTTTTATTGGGGTAATCAGTCACTTTCAA  1050

seq1  GTTGCATTTGGGGCTTGCTCTACAGCAGTGGTTCTCAATCTGTGGATCCT  1098
      |||||| |||||||||||||||||||| | ||||| |||||||| || ||
seq2  GTTGCA-TTGGGGCTTGCTCTACAGCA-TAGTTCTTAATCTGTGAAT-CT  1097

seq1  GACTATTAGAAAACATATATTTCCGAGTATTTGAAAGA-CTTCATTAGAA  1147
      |||||||| |||||||| || | |||||| ||| |||| |||||||||||
seq2  GACTATTA-AAAACATA-ATATTCGAGTA-TTGTAAGACCTTCATTAGAA  1144

seq1: chr7_12462199_12463331
seq2: B6Ng01-214O11.g_67_1194 (reverse)

seq1  TTATCAACTGTGTTTTCAAAGGACAAATGTCATTAATGTC-ATTGTATGT  49
      |||||||||||| |||||||| ||||| |||||||||||| |||||||||
seq2  TTATCAACTGTG-TTTCAAAGAACAAAGGTCATTAATGTCAATTGTATGT  49

seq1  AT-ACACTTTGTTGTCTTCATTCAGTTCTTTGTTGATGGATGGGTGGAAT  98
      || |||| |||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAACAC-TTGTTGTCTTCA-TCAGTTCTTTGTTGATGGATGGGTGG-AT  96

seq1  GATTGCTTTTCAGCTATTTTGAGTGATTCTGCTCTGGAAGTAACTAAGGA  148
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TGCTTTTCAGCTATTTTGAGTGATTCTGCTCTGGAAGTAACTAAGGA  145

seq1  GATATGTTTTCAAGACCCTGATTTTGAATCTTTTTAAATCATTTTAAAAA  198
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GATATGTTTTCAAGA-CCTGATTTTGAATCTTTTTAAATCA-TTTAAAAA  193

seq1  TGGAGTTAATGGTTGAAATAGAAATTCCTCTTCCATATGAAAATGTACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTAATGGTTGAAATAGAAATTCCTCTTCCATATGAAAATGTACTT  243

seq1  TATATGCTCAGGGCATAGACACTATAAGAACTTCTTTCAGAAAGGTATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTCAGGGCATAGACACTATAAGAACTTCTTTCAGAAAGGTATTT  293

seq1  ATAATAGTAACAAAATTAATAGAGCATAAGAAATACAGCATAAGTCTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTAACAAAATTAATAGAGCATAAGAAATACAGCATAAGTCTTGG  343

seq1  AAAATGCATTTCTTTTAGGAATAAAACTTTTAAAATTCAGAATATATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATTTCTTTTAGGAATAAAACTTTTAAAATTCAGAATATATTTT  393

seq1  ATAAAGCAAAGATGAATGTATATTTATGCCATGTTCTTCAAGCAAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAAGATGAATGTATATTTATGCCATGTTCTTCAAGCAAAATTT  443

seq1  CAGGAACACAAGCAAGACTATTTTCTGCAAATTAATCTTAGAACAATATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACACAAGCAAGACTATTTTCTGCAAATTAATCTTAGAACAATATA  493

seq1  AAAACATAGCTGCTGTACCACCAAGAAATAAGAATTGCAAATTTAATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGCTGCTGTACCACCAAGAAATAAGAATTGCAAATTTAATTCT  543

seq1  TCTACAACATAACATACTGATTTAAAATTCCTATTGAAAGAGTAGGACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACATAACATACTGATTTAAAATTCCTATTGAAAGAGTAGGACAA  593

seq1  GACTGCTGGTCTTTTATGCATGAGACTCTGGGTTCAATCCCTAGTACTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGGTCTTTTATGCATGAGACTCTGGGTTCAATCCCTAGTACTTC  643

seq1  CAATAAAATAAAATTCATAGAAGACAAATAATGCAGAAATGACATGACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATAAAATTCATAGAAGACAAATAATGCAGAAATGACATGACAA  693

seq1  TTTCATTTAATTTTAAGTATTGAGTGTAAGTATGTAAGATCGCATTGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAATTTTAAGTATTGAGTGTAAGTATGTAAGATCGCATTGATT  743

seq1  GAATTATCATTATCCAATAACAAAATTTACTTCATAACCATAATTCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCATTATCCAATAACAAAATTTACTTCATAACCATAATTCTCTT  793

seq1  TTGGTTTTGTTTTTAAATTTTTAATTACCATGCAGATTATTAGGTTTCGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTTTTTAAATTTTTAATTACCATGCAGATTATTAGGTTTCGT  843

seq1  TATATTTTCAAACAAATTTATTTTTGATTATATTCTTCAACATTGTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAAACAAATTTATTTTTGATTATATTCTTCAACATTGTTTTT  893

seq1  CCAGTCTCTTGACACTACCCAGTATCTCTCTGTATCCTTTATAATACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTTGACACTACCCAGTATCTCTCTGTATCCTTTATAATACTTT  943

seq1  TCACTTTAATGTCATCTTTTCTGTATTAACATCCCCTTGATTCTATTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAATGTCATCTTTTCTGTATTAACATCCCCTTGATTCTATTTCC  993

seq1  ATGTCTTTTGTTTGCATGTTTTGATCTCCTTTCAGTTTTTATAATCATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTGTTTGCATGTTTTGATCTCCTTTCAGTTTTTATAATCATCA  1043

seq1  CTTTCTCTCCCCTTACGTTCATAAGGACATGTCTCTGATGAACATATGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCCCTTACGTTCATAAGGACATGTCTCTGATGAACATATGAT  1093

seq1  TTTTGCTTTCTTGAGACTGTTACCTTTTTGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCTTGAGACTGTTACCTTTTTGAATTC  1128