BAC Information

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BAC

Clone NameB6Ng01-215H04
Chromosome12 (Build37)7 (Build37)
Map Location 15,525,340 - 15,526,54151,901,707 - 51,902,637
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215H04.bB6Ng01-215H04.g
ACCGA032414GA032415
length1,189290
definitionB6Ng01-215H04.b B6Ng01-215H04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,525,340 - 15,526,541)(51,901,707 - 51,902,637)
sequence
gaattcactctgtagaccagactgtccttgaaatcccagggatctgcctg
cctttgcccccaagtgctcagattaaaggcatgggcaccactgtactgcc
agtctgcttccttatagaatctaggaccacatcccagagatgataccacc
cgcaatgagtggggccttccccatcaatcactacttacgaaaatgcccta
caaccttacatatagctagaacttatgaaggaattttctccattgaggtt
ccctcctttagatgactttagcttgtttcaaattgacctaaaactagcta
ccacaaatatgaattatctaatgtttgatgtaatgagagatgagtagttt
tactagagaaattaagaaaaattaaaaaatgtaatagatgcccactatgt
ttttggattgggaaactcaatttactttttatagatattctcaaaatgtt
ggcatccctgcctataaaaacagagaaaagaaatctggagagttttaaag
agcaatggaaaagtgtttgttgtgtactagagaatttcaattttagtctt
tcgtttttctcttattcactaaacattttccagctatctccacagacttg
ccaaagagacagctcacctggtcaggctcggaaaatgagtgctgtggttt
ctctgagccttgtagctcctgaatgctacagtcgacacagagacaaattc
aaaagatgcccttaatctaactctctaaggcagaaataattcactttaaa
acaaaacaaaacaaaactcattcaaaaccaacccaagtttatattgttta
ccctgggcacagcttgcatcattctgacctaatttataccaagcaagtca
ggagtctgtaaaattagaaaccccgtggccctagcttctctgcaataggc
tctcaattattgtactcagctgaagcaaggaggcttatctttctgctatg
gttttgcaattaccccctttctcctgtatttcctttaccccagctgcaga
ggctctgccattctatcattgtatactttacttaagtacttgatggggaa
tgtgctacttctgcatagtaaagaaagcttatctaccattgaatttaata
ttccacatggtgctcccttctggttgtcattcgacatattctgtcatctg
atagctacagcaacctcaatgagaacgctttcttgacat

cagggttacagattctctgcgtcgtcatctttgctggaatgggtttttgg
tgatgcagttacctctaagttatccatattcctgtaagtaacctgtcacc
tacttcctgtaggcaacccaataataaatacactgatttgtcaatggcct
ttgctacttctgatttcactgctcagttgaaatattctatattaagaata
tagacatttgttaatatctcacccaggaattatcatgtaatagcatatga
ttatatatatatatatatgtgtgtgtgtgtgtgtgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_15525340_15526541
seq2: B6Ng01-215H04.b_41_1229 (reverse)

seq1  ATGTCAAGAAAGCTGTCCTCATTGAGGTGCCTCGTGAGCTATCAGATGAC  50
      ||||||||||||| || |||||||||||  || || ||||||||||||||
seq2  ATGTCAAGAAAGC-GTTCTCATTGAGGTTGCT-GT-AGCTATCAGATGAC  47

seq1  AG-ATATGTCCGGATGGACAACTCAGAAGGGAGCA-CATGGTTGGAAATA  98
      || |||||||  ||  |||||| |||||||||||| ||||  ||| ||||
seq2  AGAATATGTC--GAATGACAAC-CAGAAGGGAGCACCATG--TGG-AATA  91

seq1  TTTAAATCAATGGTAGGATAAGCTTTTCTTTACTATGCAGAAGTAGCAAC  148
      || || ||||||||| ||||||| ||||||||||||||||||||||| ||
seq2  TTAAATTCAATGGTA-GATAAGC-TTTCTTTACTATGCAGAAGTAGC-AC  138

seq1  ATTCCCCATCAAAGTTACCTTAAGTAAAGTATACAATGATAG-ATGGCAG  197
      |||||||||| ||||   |||||||||||||||||||||||| |||||||
seq2  ATTCCCCATC-AAGT--ACTTAAGTAAAGTATACAATGATAGAATGGCAG  185

seq1  AGCCTCCTGCAGCTGGGGTAAAGGAAATACAGGAGAAAGGGGGTAATTGC  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCT-CTGCAGCTGGGGTAAAGGAAATACAGGAGAAAGGGGGTAATTGC  234

seq1  AAAACCATAGCAGAAAGATAAGCCTCCTTGCTTCAGCTGAGTACAATAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATAGCAGAAAGATAAGCCTCCTTGCTTCAGCTGAGTACAATAAT  284

seq1  TGAGAGCCTATTGCAGAGAAGCTAGGGCCACGGGGTTTCTAATTTTACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCTATTGCAGAGAAGCTAGGGCCACGGGGTTTCTAATTTTACAG  334

seq1  ACTCCTGACTTGCTTGGTATAAATTAGGTCAGAATGATGCAAGCTGTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGACTTGCTTGGTATAAATTAGGTCAGAATGATGCAAGCTGTGCC  384

seq1  CAGGGTAAACAATATAAACTTGGGTTGGTTTTGAATGAGTTTTGTTTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAACAATATAAACTTGGGTTGGTTTTGAATGAGTTTTGTTTTGT  434

seq1  TTTGTTTTAAAGTGAATTATTTCTGCCTTAGAGAGTTAGATTAAGGGCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAAAGTGAATTATTTCTGCCTTAGAGAGTTAGATTAAGGGCAT  484

seq1  CTTTTGAATTTGTCTCTGTGTCGACTGTAGCATTCAGGAGCTACAAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATTTGTCTCTGTGTCGACTGTAGCATTCAGGAGCTACAAGGCT  534

seq1  CAGAGAAACCACAGCACTCATTTTCCGAGCCTGACCAGGTGAGCTGTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCACAGCACTCATTTTCCGAGCCTGACCAGGTGAGCTGTCTC  584

seq1  TTTGGCAAGTCTGTGGAGATAGCTGGAAAATGTTTAGTGAATAAGAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAGTCTGTGGAGATAGCTGGAAAATGTTTAGTGAATAAGAGAAA  634

seq1  AACGAAAGACTAAAATTGAAATTCTCTAGTACACAACAAACACTTTTCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAGACTAAAATTGAAATTCTCTAGTACACAACAAACACTTTTCCA  684

seq1  TTGCTCTTTAAAACTCTCCAGATTTCTTTTCTCTGTTTTTATAGGCAGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTAAAACTCTCCAGATTTCTTTTCTCTGTTTTTATAGGCAGGG  734

seq1  ATGCCAACATTTTGAGAATATCTATAAAAAGTAAATTGAGTTTCCCAATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACATTTTGAGAATATCTATAAAAAGTAAATTGAGTTTCCCAATC  784

seq1  CAAAAACATAGTGGGCATCTATTACATTTTTTAATTTTTCTTAATTTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATAGTGGGCATCTATTACATTTTTTAATTTTTCTTAATTTCTC  834

seq1  TAGTAAAACTACTCATCTCTCATTACATCAAACATTAGATAATTCATATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAACTACTCATCTCTCATTACATCAAACATTAGATAATTCATATT  884

seq1  TGTGGTAGCTAGTTTTAGGTCAATTTGAAACAAGCTAAAGTCATCTAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGCTAGTTTTAGGTCAATTTGAAACAAGCTAAAGTCATCTAAAG  934

seq1  GAGGGAACCTCAATGGAGAAAATTCCTTCATAAGTTCTAGCTATATGTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCTCAATGGAGAAAATTCCTTCATAAGTTCTAGCTATATGTAA  984

seq1  GGTTGTAGGGCATTTTCGTAAGTAGTGATTGATGGGGAAGGCCCCACTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAGGGCATTTTCGTAAGTAGTGATTGATGGGGAAGGCCCCACTCA  1034

seq1  TTGCGGGTGGTATCATCTCTGGGATGTGGTCCTAGATTCTATAAGGAAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGGTGGTATCATCTCTGGGATGTGGTCCTAGATTCTATAAGGAAGC  1084

seq1  AGACTGGCAGTACAGTGGTGCCCATGCCTTTAATCTGAGCACTTGGGGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCAGTACAGTGGTGCCCATGCCTTTAATCTGAGCACTTGGGGGC  1134

seq1  AAAGGCAGGCAGATCCCTGGGATTTCAAGGACAGTCTGGTCTACAGAGTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGGCAGATCCCTGGGATTTCAAGGACAGTCTGGTCTACAGAGTG  1184

seq1  AATTC  1202
      |||||
seq2  AATTC  1189


seq1: chr7_51901707_51902637
seq2: B6Ng01-215H04.g_271_359 (reverse)

seq1  AAACACACACGAGCGACACCCTGTAGTATTTTGGGAGCAAAAGATTATTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTAAACAAGACTTTTTGTACTGAAAACAATTTTTTAAAAATCTTTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCCTAAAAGACCCATTTATTTTCCTTGGGACATGTAAGAACTGTGCAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCCATTTATGGTTTAAAGCAAACATGCCAGATGAACCTGAGGGATGAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGATAGAAAAGAACATATTTTTGCTATGGCTGGTTACCCCAGCTCTTTTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTTGTGTGTGTGGTTCAAGTGCGCACTGGGAGGCATCTGAGGTCTGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCAACCATATGCTCCTGCCTTGCCCCTCCGATAGGGTTTGTTAATTTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTAATTAATGAAAATATGTAATATTAATAGCTGACGTTTTTGCTTAT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTCACTTTATGAAAGAATTTTTTTAAAAAAAAGAACATTTCTAAAAC  450
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGACAAAAGGGGTTAATGTTACATAAAATTATACACACACACACAC  500
                                        | ||||||||||||||
seq2  ----------------------------------AAACACACACACACAC  16

seq1  ACACACACATATATACATGCATACACACATACACATATAT-ATACATACA  549
      ||||||| ||||||| ||  |||  || || |   || || ||| || | 
seq2  ACACACATATATATATATATATAATCATATGCTATTACATGATA-ATTCC  65

seq1  TATAT-ATATATATATATATATATATATATATACCAATTTTTTTCTCTGG  598
      |   | | ||||  | | || | |                          
seq2  TGGGTGAGATATTAACAAATGTCT--------------------------  89

seq1  GTGCAAAAATGTTCATTCTTTTAAAAACATTAAAAAAATAAAAATAAAAA  648
                                                        
seq2  --------------------------------------------------  89

seq1  GCCTCCTTTTTCCACCCCTCAAGTCAACTTTTGTGCTCCAGAAAATTTTC  698
                                                        
seq2  --------------------------------------------------  89

seq1  TATTCCATAAGTCTAAGGGTAAAACTTCAAGTATTAAGATAATTTGTACA  748
                                                        
seq2  --------------------------------------------------  89

seq1  TGTAGAGAAAAAAAATGACTTTTTCATAACATACAGGGGCAGCTGCCAAG  798
                                                        
seq2  --------------------------------------------------  89

seq1  TTGATGTATTATAATATTGTGGTTTCTGTTTCCTGAGAGAATTTTTTTGT  848
                                                        
seq2  --------------------------------------------------  89

seq1  TATTTTTACATCTAACAAAGGGGTAAAAAATCAAAAAAGAGGGTAAGAAA  898
                                                        
seq2  --------------------------------------------------  89

seq1  TGACTCCTGGGTGATTTTAACATGCAAATGTCT  931
                                       
seq2  ---------------------------------  89


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