BAC Information

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BAC

Clone NameB6Ng01-215N13
Chromosome7 (Build37)
Map Location 65,203,587 - 65,372,335
singlet/doubletdoublet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215N13.bB6Ng01-215N13.g
ACCGA032693GA032694
length1,009737
definitionB6Ng01-215N13.b B6Ng01-215N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,203,587 - 65,204,573)(65,371,603 - 65,372,335)
sequence
gaattcttgatctttccatgacttttaacatgaagggatgttttattttc
tcacatcctttttcagcatctaatgaaatggtaatgtgttttttctttga
gtttgtttatataatggtatacattgatggattttcatctttgaaaattt
taattgataatacttaatttattttatttctggcctggaattttttccca
aagtgtttatctaccaagaattttgagacaatagactagtgaactgaaga
agggttactctgactttgtttagaggtcaacctgctagaggttgaccttg
agactatgtaaaagacaggtaggcactgactttattattatattttagct
attctatatcctatttcaagatataaaaataagcttatctgcaatgacaa
aaccaaaaacaaaataaaaaaaaaaaaacctttgataacattctggtgaa
tcaggtgagttctattgataaatttaataagaactgacattttccatgct
ttcagtgctaaatatagaacgcaggacccaacacatgctagaaagatact
attccattgagctacatctcaggtccaagaagcacatcttttactatgct
aactaagtctttcataaaattaacccaaccatggttaatttttattttgg
ctttaggtttgggtgtatttttataatttttattttaaaggttttatact
ttatcaagttcatgcctaagactaccacttacttttgtggaattttaaat
gatactatgattcttattttggttttcatgttagatgtattattgtatga
cttttgttctcagtgcataatagattcatttttcttatatcttttgggta
gagagttatttttgtgagtgcaattcgtttagaaacatagaggaatattg
atttcctgtctttctcaaagtgttcagaattttactgatctatcaatagg
atataggcagtttacatggcagccaatttcccagatattcttgggcattt
tctggtacc

gaattcacactgcagcagaatgcagcacttcagtgacatgtttttacctg
atactcacctgttgtttattattattattaattttgtttgccttactgtt
ttttttctttgggcaggatctaggtatttattctcactacccttgaactc
aagatcttccagccttagcctcctgagagctaggatttcaggcatgagct
gatactgtgctcagccaactgtggcccaacctgtcctcaaactcatgatc
tgctttgcctcatcctcttcagcatattcgtttttctctatgtttcatca
caaccagactatgaacattcacaaaattttgaaatcactcttttaaaatt
aagaaaagtaaaaacattcactgtccattgaataatcaaaattgcagaaa
actatctcagaaaggaggagggttctctctctctctctttccctctctct
atctctctctctctctgtctctctgtctctctctctctctctctctctct
ctctctctctctctctctctcctttcttttttgggggggctgggaggcag
ccaacacaaaacttgcaatttaagacttgggtcctccagcattaggtttt
gttattgctgagtgtcagagtgtgtaggaaggtcgtggatatttatgggg
ggggagtcccgaaagctgtgatatgaaacctccacacaccactgtccatt
cctgtgtataaagctgcatgaaaagacactttcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_65203587_65204573
seq2: B6Ng01-215N13.b_44_1043

seq1  GAATTCTTGATCTTTCCATGACTTTTAACATGAAGGGATGTTTTATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCTTTCCATGACTTTTAACATGAAGGGATGTTTTATTTTC  50

seq1  TCACATCCTTTTTCAGCATCTAATGAAATGGTAATGTGTTTTTTCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCTTTTTCAGCATCTAATGAAATGGTAATGTGTTTTTTCTTTGA  100

seq1  GTTTGTTTATATAATGGTATACATTGATGGATTTTCATCTTTGAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTATATAATGGTATACATTGATGGATTTTCATCTTTGAAAATTT  150

seq1  TAATTGATAATACTTAATTTATTTTATTTCTGGCCTGGAATTTTTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAATACTTAATTTATTTTATTTCTGGCCTGGAATTTTTTCCCA  200

seq1  AAGTGTTTATCTACCAAGAATTTTGAGACAATAGACTAGTGAACTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTATCTACCAAGAATTTTGAGACAATAGACTAGTGAACTGAAGA  250

seq1  AGGGTTACTCTGACTTTGTTTAGAGGTCAACCTGCTAGAGGTTGACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACTCTGACTTTGTTTAGAGGTCAACCTGCTAGAGGTTGACCTTG  300

seq1  AGACTATGTAAAAGACAGGTAGGCACTGACTTTATTATTATATTTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGTAAAAGACAGGTAGGCACTGACTTTATTATTATATTTTAGCT  350

seq1  ATTCTATATCCTATTTCAAGATATAAAAATAAGCTTATCTGCAATGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATCCTATTTCAAGATATAAAAATAAGCTTATCTGCAATGACAA  400

seq1  AACCAAAAACAAAATAAAAAAAAAAAAACCTTTGATAACATTCTGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAACAAAATAAAAAAAAAAAAACCTTTGATAACATTCTGGTGAA  450

seq1  TCAGGTGAGTTCTATTGATAAATTTAATAAGAACTGACATTTTCCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGAGTTCTATTGATAAATTTAATAAGAACTGACATTTTCCATGCT  500

seq1  TTCAGTGCTAAATATAGAACGCAGGACCCAACACATGCTAGAAAGATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTAAATATAGAACGCAGGACCCAACACATGCTAGAAAGATACT  550

seq1  ATTCCATTGAGCTACATCTCAGGTCCAAGAAGCACATCTTTTACTATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTGAGCTACATCTCAGGTCCAAGAAGCACATCTTTTACTATGCT  600

seq1  AACTAAGTCTTTCATAAAATTAACCCAACCATGGTTAATTTTTATTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTCTTTCATAAAATTAACCCAACCATGGTTAATTTTTATTTTGG  650

seq1  CTTTAGGTTTGGGTGTATTTTTATAATTTTTATTTTAAAGGTTTTATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTTGGGTGTATTTTTATAATTTTTATTTTAAAGGTTTTATACT  700

seq1  TTATCAAGTTCATGCCTAAGACTACCACTTACTTTTGTGGAATTTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGTTCATGCCTAAGACTACCACTTACTTTTGTGGAATTTTAAAT  750

seq1  GATACTATGATTCTTATTTTGGTTTTCATGTTAGATGTATTATTGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATGATTCTTATTTTGGTTTTCATGTTAGATGTATTATTGTATGA  800

seq1  CTTTTGTTCTCAGTGCATAATAGATTCA-TTTTCTTATATCTTTTGGGTA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTTGTTCTCAGTGCATAATAGATTCATTTTTCTTATATCTTTTGGGTA  850

seq1  GAGAGTTA-TTTTGTGAGTGC-ATTCAGTTAGAAACATAGAGGAATA-TG  896
      |||||||| |||||||||||| ||||  ||||||||||||||||||| ||
seq2  GAGAGTTATTTTTGTGAGTGCAATTCGTTTAGAAACATAGAGGAATATTG  900

seq1  ATTT-CTGTC-TTCTCAAAGTG-TCAGAA-TTTACTGA-CTATC-ATA-G  939
      |||| ||||| ||||||||||| |||||| |||||||| ||||| ||| |
seq2  ATTTCCTGTCTTTCTCAAAGTGTTCAGAATTTTACTGATCTATCAATAGG  950

seq1  ATATA-GCAGTTTTAATGGCAG-CAATTTCCCAGATAATTCTT-GGCATT  986
      ||||| |||||||  ||||||| ||||||||||||| |||||| ||||||
seq2  ATATAGGCAGTTTACATGGCAGCCAATTTCCCAGAT-ATTCTTGGGCATT  999

seq1  T  987
      |
seq2  T  1000


seq1: chr7_65371603_65372335
seq2: B6Ng01-215N13.g_68_804 (reverse)

seq1  TAGGG-AAGTGTC-TTTCATGCTGCTTTATTCACAGGAA-GGACAGTGGT  47
      ||||| ||||||| |||||||| ||||||| |||||||| ||||||||||
seq2  TAGGGAAAGTGTCTTTTCATGCAGCTTTATACACAGGAATGGACAGTGGT  50

seq1  GTGTGGAGGTTCATTTTCACAGCTTTTCGGGACT-CCCCACCATAAATAT  96
      |||||||||||   | ||||||| |||||||||| |||| ||||||||||
seq2  GTGTGGAGGTTTCATATCACAGC-TTTCGGGACTCCCCCCCCATAAATAT  99

seq1  CCACGACCTTCCTACACACTCTGACACTCAGCAATAAC-AAACCTACTGC  145
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CCACGACCTTCCTACACACTCTGACACTCAGCAATAACAAAACCTAATGC  149

seq1  TGGAGGACCCAAGTCTTAAATTGCAAGCTTTGTGTTGGCTGCCTCCCAGC  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAGGACCCAAGTCTTAAATTGCAAGTTTTGTGTTGGCTGCCTCCCAGC  199

seq1  CCCCCCAAAAAAGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAAAAAGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  249

seq1  AGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGATAGAGAGAGGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGATAGAGAGAGGGAA  299

seq1  AGAGAGAGAGAGAGAACCCTCCTCCTTTCTGAGATAGTTTTCTGCAATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAACCCTCCTCCTTTCTGAGATAGTTTTCTGCAATTT  349

seq1  TGATTATTCAATGGACAGTGAATGTTTTTACTTTTCTTAATTTTAAAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTCAATGGACAGTGAATGTTTTTACTTTTCTTAATTTTAAAAGA  399

seq1  GTGATTTCAAAATTTTGTGAATGTTCATAGTCTGGTTGTGATGAAACATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCAAAATTTTGTGAATGTTCATAGTCTGGTTGTGATGAAACATA  449

seq1  GAGAAAAACGAATATGCTGAAGAGGATGAGGCAAAGCAGATCATGAGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACGAATATGCTGAAGAGGATGAGGCAAAGCAGATCATGAGTTT  499

seq1  GAGGACAGGTTGGGCCACAGTTGGCTGAGCACAGTATCAGCTCATGCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGGTTGGGCCACAGTTGGCTGAGCACAGTATCAGCTCATGCCTG  549

seq1  AAATCCTAGCTCTCAGGAGGCTAAGGCTGGAAGATCTTGAGTTCAAGGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAGCTCTCAGGAGGCTAAGGCTGGAAGATCTTGAGTTCAAGGGT  599

seq1  AGTGAGAATAAATACCTAGATCCTGCCCAAAGAAAAAAAACAGTAAGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATAAATACCTAGATCCTGCCCAAAGAAAAAAAACAGTAAGGCA  649

seq1  AACAAAATTAATAATAATAATAAACAACAGGTGAGTATCAGGTAAAAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTAATAATAATAATAAACAACAGGTGAGTATCAGGTAAAAACA  699

seq1  TGTCACTGAAGTGCTGCATTCTGCTGCAGTGTGAATTC  733
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAAGTGCTGCATTCTGCTGCAGTGTGAATTC  737


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