BAC Information

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BAC

Clone NameB6Ng01-215O20
Chromosome7 (Build37)
Map Location 53,747,757 - 53,929,571
singlet/doubletdoublet
Overlap geneSergef, Tph1
Upstream geneNucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneSaal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215O20.bB6Ng01-215O20.g
ACCGA032753GA032754
length1,1011,102
definitionB6Ng01-215O20.b B6Ng01-215O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,928,470 - 53,929,571)(53,747,757 - 53,748,861)
sequence
tgagtatatgttggccctggctcctttctcggcttcccagccagccatga
ggagatcaccttggctcccttgtacccttgcactatgtattctgtctctc
tgtggtccagaaacaatgcctggctattcgaggcttgaatcccaccctca
ccccagccacaagccaagggtacactcttgcaccctgaagttctttccct
ctggtgtttgtcacgatggagttaaactatggatatccttgctggatatg
ggtgggctactgcacatcattacaggacgaatgttttctttgctactttt
atgccgattataggagaaaaccttaaaacataacttgagaaggcatttca
taggtagagaaaccaaggtatggaaaaggtaagctgtctgttgttgcaaa
gctaacgaagtgactgcgttgggctccagggtcaccccggagtccttatg
ctgtgagcgcatacgagaaagacctttgcggagatgattctggacgcttc
cacagttgcttcacatcttcttcttggcttacgggaagacggtttacaga
tctctcacagtaaggaagagtgctgtgaggaggtgtagcgagggagtccc
gaagcatttaaaacctggcattgcatctcaaaatttctatccgtttggtg
accactggattcagatggcagagctctaaggtagaaatttcccaaatctc
cgagtagccacacagatcacatggagaacagccctggagggtcactcaca
ggctgctgaacaagaatgggtgagaaataaaccttcctgaggctagcata
acaaagggacaatgggtcactggagatagccgtcaccatccttagcacat
attaatcagatggggggaaattccatgttcttttacatttaaatgggaca
cccataaaacaggtgactcagacttctctccccccctaccctgcaccgga
aatcatatgtgcatgttttcccacctcctatgcataaagcagagggagga
atctctcacacactcactccatcacacctactacacactctctaattgga
aagaaatcattttaaaactttgaaagacatgtcttctctagtatcatatg
a
gaattccactgcttcactgcaccccagaagcaggtgggtgggcaccacag
tccgtttggagagctagagcctctacttgatggcgcaccgctgcccactg
tgctggtctatcacgcctggacggagggcagggtgtgcctgcacgcagct
gaggtgggggcgtgccttgggaaaagtcataacttttctttgcatctctt
tatatatatatatacacacacacatatatacataatggagataataaaag
taatcttttaagtgtctctatgcagagaaaaatcgctgtataaagtggct
ctgcacagaagatgtgctcggtgatggagccagcagaactgtgcaccatc
tggcctgctgctcagcaagaccaccctgctggagctttgtacaggtgatc
tagcaagggacccacccgttctgacatgagaaatgggccttagatagggc
tcagggtagaggactttccttatatgtgtggatttctgtgttcagtctct
agcaaagtatgcatatgtgtgtacactacacgcacacacacaacttacag
taagctgaaagggcccgagaggtacctaagggtgaccaggtaatagccgg
caggtcttagccattgagcctgcattttaataagctaacacatggttctg
ctgcactgttagatttgagaacttttggggtaattaccttttaagggcac
ataagcagttaaatgagttattgctatatctattccatcaccagtatact
gcatggccattatgaaatgggcagtaaacatggaaaatcaaaaagtaaga
aatgaaaatgcaatcacatttgagttcttagatgataccagaattttttt
taccaagatcggggtccatggttcttacatactcacaagcatccggtcta
taacacaaaggcaaacgagagacatgaagataagacgttatacaccaaag
cacacaattagtcaaggggaacaggaatgggagttagtgattggcatttc
tgagaagggagatctacagacctcgggctgacccagctgactgtgggaga
acttggccagactcatgagtgtcgggtctgggattccacatctatagatc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53928470_53929571
seq2: B6Ng01-215O20.b_57_1157 (reverse)

seq1  TCATATGATACTTAGAGAAGACATGGTTCTTTTAAAGTTTTAAAATTGAT  50
      ||||||||||| |||||||||||||  ||||| |||||||||||| ||||
seq2  TCATATGATAC-TAGAGAAGACATG--TCTTTCAAAGTTTTAAAA-TGAT  46

seq1  TTCTTTTCAATT-GTGTGTGTGT-GTGTGTGTGTGTGTGTGTGTGTGTGT  98
      |||||| ||||| | | |||||| ||  |||||   | ||| ||||||| 
seq2  TTCTTTCCAATTAGAGAGTGTGTAGTAGGTGTGATGGAGTGAGTGTGTGA  96

seq1  GTGTGTTTCTTCCTCTGCTTTATTGCATAGGAGGTGGG-AAACATGCACA  147
      | |  || || ||||||||||| ||||||||||||||| |||||||||||
seq2  GAG-ATTCCTCCCTCTGCTTTA-TGCATAGGAGGTGGGAAAACATGCACA  144

seq1  TATGATTTCCGGTGCAGGGTA-GGGGGGAGAG-AGTCTGAGTCACCTGTT  195
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TATGATTTCCGGTGCAGGGTAGGGGGGGAGAGAAGTCTGAGTCACCTGTT  194

seq1  TTATGGGTGTCCCATTTAAATGTAAAAGAACATGGAATTTCCCCCCATCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTGTCCCATTTAAATGTAAAAGAACATGGAATTTCCCCCCATCT  244

seq1  GATTAATATGTGCTAAGGATGGTGACGGCTATCTCCAGTGACCCATTGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATATGTGCTAAGGATGGTGACGGCTATCTCCAGTGACCCATTGTC  294

seq1  CCTTTGTTATGCTAGCCTCAGGAAGGTTTATTTCTCACCCATTCTTGTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTATGCTAGCCTCAGGAAGGTTTATTTCTCACCCATTCTTGTTC  344

seq1  AGCAGCCTGTGAGTGACCCTCCAGGGCTGTTCTCCATGTGATCTGTGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGTGAGTGACCCTCCAGGGCTGTTCTCCATGTGATCTGTGTGG  394

seq1  CTACTCGGAGATTTGGGAAATTTCTACCTTAGAGCTCTGCCATCTGAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCGGAGATTTGGGAAATTTCTACCTTAGAGCTCTGCCATCTGAATC  444

seq1  CAGTGGTCACCAAACGGATAGAAATTTTGAGATGCAATGCCAGGTTTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCACCAAACGGATAGAAATTTTGAGATGCAATGCCAGGTTTTAA  494

seq1  ATGCTTCGGGACTCCCTCGCTACACCTCCTCACAGCACTCTTCCTTACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCGGGACTCCCTCGCTACACCTCCTCACAGCACTCTTCCTTACTG  544

seq1  TGAGAGATCTGTAAACCGTCTTCCCGTAAGCCAAGAAGAAGATGTGAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCTGTAAACCGTCTTCCCGTAAGCCAAGAAGAAGATGTGAAGC  594

seq1  AACTGTGGAAGCGTCCAGAATCATCTCCGCAAAGGTCTTTCTCGTATGCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGAAGCGTCCAGAATCATCTCCGCAAAGGTCTTTCTCGTATGCG  644

seq1  CTCACAGCATAAGGACTCCGGGGTGACCCTGGAGCCCAACGCAGTCACTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCATAAGGACTCCGGGGTGACCCTGGAGCCCAACGCAGTCACTT  694

seq1  CGTTAGCTTTGCAACAACAGACAGCTTACCTTTTCCATACCTTGGTTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCTTTGCAACAACAGACAGCTTACCTTTTCCATACCTTGGTTTCT  744

seq1  CTACCTATGAAATGCCTTCTCAAGTTATGTTTTAAGGTTTTCTCCTATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTATGAAATGCCTTCTCAAGTTATGTTTTAAGGTTTTCTCCTATAA  794

seq1  TCGGCATAAAAGTAGCAAAGAAAACATTCGTCCTGTAATGATGTGCAGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCATAAAAGTAGCAAAGAAAACATTCGTCCTGTAATGATGTGCAGTA  844

seq1  GCCCACCCATATCCAGCAAGGATATCCATAGTTTAACTCCATCGTGACAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCATATCCAGCAAGGATATCCATAGTTTAACTCCATCGTGACAA  894

seq1  ACACCAGAGGGAAAGAACTTCAGGGTGCAAGAGTGTACCCTTGGCTTGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAGGGAAAGAACTTCAGGGTGCAAGAGTGTACCCTTGGCTTGTG  944

seq1  GCTGGGGTGAGGGTGGGATTCAAGCCTCGAATAGCCAGGCATTGTTTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTGAGGGTGGGATTCAAGCCTCGAATAGCCAGGCATTGTTTCTG  994

seq1  GACCACAGAGAGACAGAATACATAGTGCAAGGGTACAAGGGAGCCAAGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGAGAGACAGAATACATAGTGCAAGGGTACAAGGGAGCCAAGGT  1044

seq1  GATCTCCTCATGGCTGGCTGGGAAGCCGAGAAAGGAGCCAGGGCCAACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTCATGGCTGGCTGGGAAGCCGAGAAAGGAGCCAGGGCCAACAT  1094

seq1  ATACTCA  1102
      |||||||
seq2  ATACTCA  1101

seq1: chr7_53747757_53748861
seq2: B6Ng01-215O20.g_70_1171

seq1  GAATTCCACTGCTTCACTGCACCCCAGAAGCAGGTGGGTGGGCACCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCTTCACTGCACCCCAGAAGCAGGTGGGTGGGCACCACAG  50

seq1  TCCGTTTGGAGAGCTAGAGCCTCTACTTGATGGCGCACCGCTGCCCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTGGAGAGCTAGAGCCTCTACTTGATGGCGCACCGCTGCCCACTG  100

seq1  TGCTGGTCTATCACGCCTGGACGGAGGGCAGGGTGTGCCTGCACGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTATCACGCCTGGACGGAGGGCAGGGTGTGCCTGCACGCAGCT  150

seq1  GAGGTGGGGGCGTGCCTTGGGAAAAGTCATAACTTTTCTTTGCATCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGGCGTGCCTTGGGAAAAGTCATAACTTTTCTTTGCATCTCTT  200

seq1  TATATATATATATACACACACACATATATACATAATGGAGATAATAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATACACACACACATATATACATAATGGAGATAATAAAAG  250

seq1  TAATCTTTTAAGTGTCTCTATGCAGAGAAAAATCGCTGTATAAAGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTTAAGTGTCTCTATGCAGAGAAAAATCGCTGTATAAAGTGGCT  300

seq1  CTGCACAGAAGATGTGCTCGGTGATGGAGCCAGCAGAACTGTGCACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAAGATGTGCTCGGTGATGGAGCCAGCAGAACTGTGCACCATC  350

seq1  TGGCCTGCTGCTCAGCAAGACCACCCTGCTGGAGCTTTGTACAGGTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTGCTCAGCAAGACCACCCTGCTGGAGCTTTGTACAGGTGATC  400

seq1  TAGCAAGGGACCCACCCGTTCTGACATGAGAAATGGGCCTTAGATAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGGACCCACCCGTTCTGACATGAGAAATGGGCCTTAGATAGGGC  450

seq1  TCAGGGTAGAGGACTTTCCTTATATGTGTGGATTTCTGTGTTCAGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAGAGGACTTTCCTTATATGTGTGGATTTCTGTGTTCAGTCTCT  500

seq1  AGCAAAGTATGCATATGTGTGTACACTACACGCACACACACAACTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTATGCATATGTGTGTACACTACACGCACACACACAACTTACAG  550

seq1  TAAGCTGAAAGGGCCCGAGAGGTACCTAAGGGTGACCAGGTAATAGCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAAAGGGCCCGAGAGGTACCTAAGGGTGACCAGGTAATAGCCGG  600

seq1  CAGGTCTTAGCCATTGAGCCTGCATTTTAATAAGCTAACACATGGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTAGCCATTGAGCCTGCATTTTAATAAGCTAACACATGGTTCTG  650

seq1  CTGCACTGTTAGATTTGAGAACTTTTGGGGTAATTACCTTTTAAGGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTTAGATTTGAGAACTTTTGGGGTAATTACCTTTTAAGGGCAC  700

seq1  ATAAGCAGTTAAATGAGTTATTGCTATATCTATTCCATCACCAGTATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGTTAAATGAGTTATTGCTATATCTATTCCATCACCAGTATACT  750

seq1  GCATGGCCATTATGAAATGGGCAGTAAACATGGAAAATCAAAAAGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCATTATGAAATGGGCAGTAAACATGGAAAATCAAAAAGTAAGA  800

seq1  AATGAAAATGCAATCAACATTGAGTTCTTAGATGATACCAGAATTTTTTT  850
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AATGAAAATGCAATCACATTTGAGTTCTTAGATGATACCAGAATTTTTTT  850

seq1  TACCAAGATCGGGGTCCATGGTTCTTACATACTCACAAGCATCCGGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGATCGGGGTCCATGGTTCTTACATACTCACAAGCATCCGGTCTA  900

seq1  TAACACAAAGGCAAACGAGAGACATGAAGATAAGACG-TATACACCAAAG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAACACAAAGGCAAACGAGAGACATGAAGATAAGACGTTATACACCAAAG  950

seq1  CACACAAATTAGCCAAGGGGAACAGGAATGGGAGTTAGTGA-TGGCATTT  998
      ||||| |||||| |||||||||||||||||||||||||||| ||||||||
seq2  CACAC-AATTAGTCAAGGGGAACAGGAATGGGAGTTAGTGATTGGCATTT  999

seq1  CTGAAGGAAGGGAGATCTACAGACC-CGGGCTGACCCAGGCTGACTGTGG  1047
      ||||  ||||||||||||||||||| |||||||||||| |||||||||||
seq2  CTGA--GAAGGGAGATCTACAGACCTCGGGCTGACCCA-GCTGACTGTGG  1046

seq1  GAAGACTTGGGCAGACACAGGAGGTGGGCGGGGTCT-GGAGTCCACATCT  1096
      ||  |||||| ||||| || ||   | |  |||||| ||| |||||||||
seq2  GAGAACTTGGCCAGACTCATGA---GTGTCGGGTCTGGGATTCCACATCT  1093

seq1  ATAGATCTG  1105
      |||||||||
seq2  ATAGATCTG  1102