BAC Information

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BAC

Clone NameB6Ng01-216C01
Chromosome7 (Build37)
Map Location 109,556,238 - 109,663,369
singlet/doubletdoublet
Overlap geneStim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284
Upstream geneCentd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneOlfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216C01.bB6Ng01-216C01.g
ACCGA032897GA032898
length9301,012
definitionB6Ng01-216C01.b B6Ng01-216C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,556,238 - 109,557,179)(109,662,358 - 109,663,369)
sequence
gaattcatgatctttttttaatatccccagtgctaggattatgggtgtgt
tcaccatgctcaagtttaaaactatgttaaaataaaatgtattgagacat
aaagaaaatacagataaattattttattttatttatgaggtagggtctat
gtatttactctcgacaggtctcactctctagcccagaccaacttgaaatg
ccatccttttgcctcagctttctgtaagatgggattttatagtcatgagg
cactatgttccataatatatttattttaagtataaagttgatagattttg
gtagatgtcataatttgtataatcaccacattcaagatatagaatatctc
tttcctctcaaattattgctttttactctgtcccggtcagttctggctga
aaccaatcattgttagtctacccctttcagacttaaggatgttttggaca
cggaaatgttaagaacacaaacatgacaagtgcgtgttcagcatggctgc
agcagcaagtgtaagttaaggcacactgcttgagagtatcataaattact
tcaacactgtggtcttttagactcaaaaggaatacgggggtagggggagg
acaactaactcaaagagtaatgtctttctctgtctttctacagtgtacaa
ctggactgtggatgaggtgatacagtggctcattacgtatgtggagctgc
cacagtatgaggaaaccttccggaagttgcagcttactggccacgccatg
ccaaggtagaaattgagtgggatttttcccttgaggtgtagagaacagtc
tgggagtgggtctgtcttcagttgctctgacaattcagtaaagctcatcc
tcagcaagagtctgtaaccagctgctcttctcatattcatggtgttgctc
taagcatgagccacttgtttgattccttat
gaattccaggacagccagggctacacagagaaaccctgtcttgaaaaacc
gaaagaaaacttttttccaaaattgtaatttagagttatcttaatctgtt
tgctgtttcgagcttcgtatgtgtttattggcaactgaaggacatacagt
ttgatcatatggcccataccaaacctgaggctactatccctgtacatggc
aatgaactgctcagcagttctggtttcagttggaactgtaagcctgcaaa
ccctcaggccagattgtacccaggaaggaaagcacctccactgtgcccat
gagcaatgggaaattagcaagcattattctaccccacctccagatcaata
aaggcttactgcccttgatctgtgagcagcctgatacctgcctccagtaa
actgaagtcaggcaactggagctggtggctcaggaaaggagccttgccca
gctccacaataaatgcctgagtctcacttctactgttcccacagaccagt
aacttcctctttttctgcaaactcagaatagggcgctcaccaggcattta
atctgccagcacccgagtcttgaaatactcagcctccaaaactgtgagag
atgaatgatagtgagccactgggtttgtcgtggccagcagagcagacgag
gtgctatcctcagacagacattatccctccccaacccagtctgacagaag
cacagacattgaaatccctgcgtggtggacttcaggtctgagattagctt
gtagcactattgctttctagtccgaagggacaaagacaccgaactggggg
gagagggacagctctgcggtagatccacaccctgcactgtagagaacaga
aagacacaggaagcactaccctatgagtgttgatcctagcaagtgagttc
cagagaatttagccccttttcagagtcatggccatcccaagtaaggcctg
ggtctctgatggggctaacatgccaaatacaggtttaagactgggaggag
gtatggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109556238_109557179
seq2: B6Ng01-216C01.b_43_972

seq1  GAATTCATGATCTTTTTTTAATATCCCCAGTGCTAGGATTATGGGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCTTTTTTTAATATCCCCAGTGCTAGGATTATGGGTGTGT  50

seq1  TCACCATGCTCAAGTTTAAAACTATGTTAAAATAAAATGTATTGAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCTCAAGTTTAAAACTATGTTAAAATAAAATGTATTGAGACAT  100

seq1  AAAGAAAATACAGATAAATTATTTTATTTTATTTATGAGGTAGGGTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATACAGATAAATTATTTTATTTTATTTATGAGGTAGGGTCTAT  150

seq1  GTATTTACTCTCGACAGGTCTCACTCTCTAGCCCAGACCAACTTGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTCTCGACAGGTCTCACTCTCTAGCCCAGACCAACTTGAAATG  200

seq1  CCATCCTTTTGCCTCAGCTTTCTGTAAGATGGGATTTTATAGTCATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTTGCCTCAGCTTTCTGTAAGATGGGATTTTATAGTCATGAGG  250

seq1  CACTATGTTCCATAATATATTTATTTTAAGTATAAAGTTGATAGATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTTCCATAATATATTTATTTTAAGTATAAAGTTGATAGATTTTG  300

seq1  GTAGATGTCATAATTTGTATAATCACCACATTCAAGATATAGAATATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTCATAATTTGTATAATCACCACATTCAAGATATAGAATATCTC  350

seq1  TTTCCTCTCAAATTATTGCTTTTTACTCTGTCCCGGTCAGTTCTGGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCAAATTATTGCTTTTTACTCTGTCCCGGTCAGTTCTGGCTGA  400

seq1  AACCAATCATTGTTAGTCTACCCCTTTCAGACTTAAGGATGTTTTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCATTGTTAGTCTACCCCTTTCAGACTTAAGGATGTTTTGGACA  450

seq1  CGGAAATGTTAAGAACACAAACATGACAAGTGCGTGTTCAGCATGGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAATGTTAAGAACACAAACATGACAAGTGCGTGTTCAGCATGGCTGC  500

seq1  AGCAGCAAGTGTAAGTTAAGGCACACTGCTTGAGAGTATCATAAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGTGTAAGTTAAGGCACACTGCTTGAGAGTATCATAAATTACT  550

seq1  TCAACACTGTGGTCTTTTAGACTCAAAAGGAATACGGGGGTAGGGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGTGGTCTTTTAGACTCAAAAGGAATACGGGGGTAGGGGGAGG  600

seq1  ACAACTAACTCAAAGAGTAATGTCTTTCTCTGTCTTTCTACAGTGTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAACTCAAAGAGTAATGTCTTTCTCTGTCTTTCTACAGTGTACAA  650

seq1  CTGGACTGTGGATGAGGTGATACAGTGGCTCATTACGTATGTGGAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGTGGATGAGGTGATACAGTGGCTCATTACGTATGTGGAGCTGC  700

seq1  CACAGTATGAGGAAACCTTCCGGAAGTTGCAGCTTACTGGCCACGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATGAGGAAACCTTCCGGAAGTTGCAGCTTACTGGCCACGCCATG  750

seq1  CCAAGGTTAGAAATTGAGTGGGATTTTTCCCTTGAGGGTGTAGAGAACAG  800
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAAGG-TAGAAATTGAGTGGGATTTTTCCCTTGA-GGTGTAGAGAACAG  798

seq1  TCTGGGAGTGGGTCTGTCTTCAGGTTGCTCTGGACAATTCAGTAAAGCTT  850
      |||||||||||||||||||||| |||||||| |||||||||||||||| |
seq2  TCTGGGAGTGGGTCTGTCTTCA-GTTGCTCT-GACAATTCAGTAAAGC-T  845

seq1  CATCCTCAGC-AGAGTCTGTAACCAGCTGCTCTTCTCATATCTATTGTGT  899
      |||||||||| ||||||||||||||||||||||||||||||  || ||| 
seq2  CATCCTCAGCAAGAGTCTGTAACCAGCTGCTCTTCTCATATTCATGGTG-  894

seq1  GTTTGCTCTAAAGCATGAAGGCCACTTTGTTTTGATTTCTTAT  942
        ||||||| ||||||||  |||||||   ||||||| |||||
seq2  --TTGCTCT-AAGCATGA--GCCACTT--GTTTGATTCCTTAT  930

seq1: chr7_109662358_109663369
seq2: B6Ng01-216C01.g_65_1075 (reverse)

seq1  TCCCCCCTTCCCTCCT-CCAGTCTTTAAACCTGTATTTGGCATTGTTAGC  49
      ||||||| | |||||| |||||| |||||||||||||||||| |||||||
seq2  TCCCCCCATACCTCCTCCCAGTC-TTAAACCTGTATTTGGCA-TGTTAGC  48

seq1  CCCATCAGAGAACCCAGGCC-TACTTGGGATGGCCATGACTCTGAAAAGG  98
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CCCATCAGAG-ACCCAGGCCTTACTTGGGATGGCCATGACTCTGAAAAGG  97

seq1  GGCTAAATTCTCTGGAACTCACTTGCTAGGATCAACACTCATAGGGTAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATTCTCTGGAACTCACTTGCTAGGATCAACACTCATAGGGTAGT  147

seq1  GCTTCCTGTGTCTTTCTGTTCTCTACAGTGCAGGGTGTGGATCTACCGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTGTCTTTCTGTTCTCTACAGTGCAGGGTGTGGATCTACCGCA  197

seq1  GAGCTGTCCCTCTCCCCCCAGTTCGGTGTCTTTGTCCCTTCGGACTAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCCCTCTCCCCCCAGTTCGGTGTCTTTGTCCCTTCGGACTAGAA  247

seq1  AGCAATAGTGCTACAAGCTAATCTCAGACCTGAAGTCCACCACGCAGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTGCTACAAGCTAATCTCAGACCTGAAGTCCACCACGCAGGGA  297

seq1  TTTCAATGTCTGTGCTTCTGTCAGACTGGGTTGGGGAGGGATAATGTCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTCTGTGCTTCTGTCAGACTGGGTTGGGGAGGGATAATGTCTG  347

seq1  TCTGAGGATAGCACCTCGTCTGCTCTGCTGGCCACGACAAACCCAGTGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGATAGCACCTCGTCTGCTCTGCTGGCCACGACAAACCCAGTGGC  397

seq1  TCACTATCATTCATCTCTCACAGTTTTGGAGGCTGAGTATTTCAAGACTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCATTCATCTCTCACAGTTTTGGAGGCTGAGTATTTCAAGACTC  447

seq1  GGGTGCTGGCAGATTAAATGCCTGGTGAGCGCCCTATTCTGAGTTTGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGCAGATTAAATGCCTGGTGAGCGCCCTATTCTGAGTTTGCAG  497

seq1  AAAAAGAGGAAGTTACTGGTCTGTGGGAACAGTAGAAGTGAGACTCAGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGAAGTTACTGGTCTGTGGGAACAGTAGAAGTGAGACTCAGGC  547

seq1  ATTTATTGTGGAGCTGGGCAAGGCTCCTTTCCTGAGCCACCAGCTCCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTGGAGCTGGGCAAGGCTCCTTTCCTGAGCCACCAGCTCCAGT  597

seq1  TGCCTGACTTCAGTTTACTGGAGGCAGGTATCAGGCTGCTCACAGATCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTTCAGTTTACTGGAGGCAGGTATCAGGCTGCTCACAGATCAA  647

seq1  GGGCAGTAAGCCTTTATTGATCTGGAGGTGGGGTAGAATAATGCTTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTAAGCCTTTATTGATCTGGAGGTGGGGTAGAATAATGCTTGCTA  697

seq1  ATTTCCCATTGCTCATGGGCACAGTGGAGGTGCTTTCCTTCCTGGGTACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATTGCTCATGGGCACAGTGGAGGTGCTTTCCTTCCTGGGTACA  747

seq1  ATCTGGCCTGAGGGTTTGCAGGCTTACAGTTCCAACTGAAACCAGAACTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTGAGGGTTTGCAGGCTTACAGTTCCAACTGAAACCAGAACTG  797

seq1  CTGAGCAGTTCATTGCCATGTACAGGGATAGTAGCCTCAGGTTTGGTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGTTCATTGCCATGTACAGGGATAGTAGCCTCAGGTTTGGTATG  847

seq1  GGCCATATGATCAAACTGTATGTCCTTCAGTTGCCAATAAACACATACGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATATGATCAAACTGTATGTCCTTCAGTTGCCAATAAACACATACGA  897

seq1  AGCTCGAAACAGCAAACAGATTAAGATAACTCTAAATTACAATTTTGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGAAACAGCAAACAGATTAAGATAACTCTAAATTACAATTTTGGAA  947

seq1  AAAAGTTTTCTTTCGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTCTTTCGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGG  997

seq1  CTGTCCTGGAATTC  1012
      ||||||||||||||
seq2  CTGTCCTGGAATTC  1011