BAC Information

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BAC

Clone NameB6Ng01-217A09
Chromosome7 (Build37)
Map Location 89,889,911 - 89,959,807
singlet/doubletdoublet
Overlap geneEftud1
Upstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A09.bB6Ng01-217A09.g
ACCGA033555GA033556
length1,1791,099
definitionB6Ng01-217A09.b B6Ng01-217A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,889,911 - 89,890,537)(89,958,720 - 89,959,807)
sequence
gaattcttcacctgcttcagaactactaagagctggctccccgagctcat
ctagtgacgagtatctcctagagacctccgctaattgatctttcttcttt
tccctttttcctctttttcttctaatctctctccaggtattcctacctaa
ccttaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatatttcctctttgttcctactctctctccccgctttact
tctgatagcttgtcctgaatttcctctagaattttcagccctatcttaat
cacttgataacatgtgaaaaggaacaaaagggctactaacaccagaaaaa
attcaaggccaaatataccttgtaaagccatttcccactttacttctgat
agactgtcttgaatttcgttagaaagttcaagaccaggcgtaccttgtaa
agctattccccactttacttctgatagactgtcttgaatttcgttagaaa
gttcaaggccaggcgtacctcgtaaagctatacttactggtatccaccgt
tccccagctgaaaagttctgaattcatacagttgaatccttcttaacagt
ctgctttacgggaacctttattaccgcgacccgcagttctggttctggaa
tgagggatcttccttgcgccagtcccgagttttttctcgtcccggaattc
ggcaccaattgttattagacgcgttctcacgaccggccaggaagaacacc
acagaccagaatcttctgcggcaaagctttatttcttacatcttcaggag
ccagggtgcaggaagcaagagagcaagaagcaagagagagagaaaacgaa
accccgtccctcttaaggagcattctccttcgcctcggacgtgtcactcc
ctgattggctgcagcccatcggccgagttgacgtcacggggaaggcagag
cacagtagtcataagatacccttggcacatgcgcagattatttgtttacc
acttagacacaggatgtcagcgcatcttgtacggcgaatgtgggggcggc
tcccaacaacacaagccatgcataagagggatgacttctttgtttctaaa
cactggccattccacttaatgctcgtagcgagttggagcagctttagtct
acgttagttcaaggcacctttttgatgca
gaattcttccttgaagcagtttcattatgagaagagtcccctggggtgct
gtaaaccctctgacccagcagcctgcggctatgactgcagatgcgtgaaa
gatgcttttgctctgtcatttaggtacagctgccgggttcttgcccaatg
tgagggtaagtcactccgatgctcgctgtctgcgggtgagggagagattt
taagctggtttatttctgtcgtaaccagtgagaacccccctagccccatt
aagaacagaagcaattggtttttgcttctccctaataagagccctcctgc
atgctcctgcctaactcctaacactgccacccacctatgcatcttctccc
caaatgctcaggacacctgcacactcaggacggaagtggtgacaggaagg
tatggtacacaaattgccatgatgactggaagagaagcagaccttggtgg
cacacaggaatagtggatagggtccaaccagacccccagctggttctgag
gattgctctgccaccattgcaagtgtggtaacggatctctgtttgtttgg
ctctctttgaataattccctctgtgggcctgagatgaggcactaggctgc
ataggctgtttgggctcgggggagttgtagttgggcttcatagaagttca
aggttactcacactgtctgtgtggtacagtaacccctcggaaagagatct
tggaactagtgttctgaagtatgtcagcagcagagatggaagcaagagcc
actgggatctttcatgttaaccttagctcatctagagagacgtggtgcag
ggtaaagctgggcgagctggggggtgaccgtgggttaaagataatgagga
cacactctgatgtgtggaacccttgagtctattaaacaacgatgacgagg
agggaagaagccccaccttcggatgcatggtgaaggagcaggtggaagag
tcaccgaccatggttgtgcaggaaggagagttcaaaacccagttctttgt
cttggcatctagaggcaaaggacaggtgcatcaactgcagaagtgtgtcc
tatgggggcatggccgtgaccttttccaaagagaagtaaagcacctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89889911_89890537
seq2: B6Ng01-217A09.b_608_1223

seq1  AGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGA  50

seq1  ACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCC  100

seq1  TTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTT  150

seq1  ATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATC  200

seq1  TTCTGCGGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGA  250

seq1  AGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTCT  300

seq1  TAAGGAGCATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCA  350

seq1  GCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCAT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCAC-AGTAGTCAT  399

seq1  AAGATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAG-ACACA  448

seq1  GGATGTCAGCGCCATCTTGTAACGGCGAATGTGGGGGCGGCTCCCAACAA  500
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GGATGTCAGCG-CATCTTGT-ACGGCGAATGTGGGGGCGGCTCCCAACAA  496

seq1  CACAAGCCATGCATAAGAAGGGGATGACTTCTTTG-TTCTAGACACTTGC  549
      ||||||||||||||||||  ||||||||||||||| ||||| ||||| ||
seq2  CACAAGCCATGCATAAGA--GGGATGACTTCTTTGTTTCTAAACACTGGC  544

seq1  CATTCCCACTAAATGCTCGTAGC-AGTTGGAGCAAGCTTTAGTCCCACCT  598
      |||| ||||| |||||||||||| ||||||||| |||||||||  |  | 
seq2  CATT-CCACTTAATGCTCGTAGCGAGTTGGAGC-AGCTTTAGT--CTACG  590

seq1  TTAGTTCACAAAGCACCCTTTTTGATGCA  627
      ||||||  ||| ||| |||||||||||||
seq2  TTAGTT--CAAGGCA-CCTTTTTGATGCA  616

seq1: chr7_89958720_89959807
seq2: B6Ng01-217A09.g_67_1165 (reverse)

seq1  ATGA-GTGCTTTACCTCTCCTTTGGAAAA-GTCAC-GCCATGCCCCCATA  47
      |||| ||||||||| ||| |||||||||| ||||| ||||||||||||||
seq2  ATGAGGTGCTTTACTTCT-CTTTGGAAAAGGTCACGGCCATGCCCCCATA  49

seq1  GGACACCACTCTGCAG-TGGTGCA-CTGT-CTTTG-CTCTAG-TGCCAGG  92
      ||||||   ||||||| || |||| |||| ||||| |||||| ||||| |
seq2  GGACACACTTCTGCAGTTGATGCACCTGTCCTTTGCCTCTAGATGCCAAG  99

seq1  ACAA--GACTGGG-TTTGGACTCTCCTTCCTGCACAACCATGGTC-GTGA  138
      ||||   |||||| |||| |||||||||||||||||||||||||| ||||
seq2  ACAAAGAACTGGGTTTTGAACTCTCCTTCCTGCACAACCATGGTCGGTGA  149

seq1  CTCTT-CACCTGCTCCCTTTCACCATGCATCCG-AGGTGTGGC-TCTTCC  185
      ||||| ||||||||||  ||||||||||||||| ||||| ||| ||||||
seq2  CTCTTCCACCTGCTCC--TTCACCATGCATCCGAAGGTGGGGCTTCTTCC  197

seq1  CTCCTCGTCATCGTTGTTTAATAGACTCAAGGGTTCCACACATCAGAGTG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCGTCATCGTTGTTTAATAGACTCAAGGGTTCCACACATCAGAGTG  247

seq1  TGTCCTCATTATCTTTAACCCACGGTCACCCCCCAGCTCGCCCAGCTTTA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCATTATCTTTAACCCACGGTCACCCCCCAGCTCGCCCAGCTTTA  297

seq1  CCCTGCACCACGTCTCTCTAGATGAGCTAAGGTTAACATGAAAGATCCCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCACCACGTCTCTCTAGATGAGCTAAGGTTAACATGAAAGATCCCA  347

seq1  GTGGCTCTTGCTTCCATCTCTGCTGCCTGACATACTTCAGAACACTAGTT  385
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGCTCTTGCTTCCATCTCTGCTG-CTGACATACTTCAGAACACTAGTT  396

seq1  CCAAGATCTCTTTCCGAGGGGTTACTGTACCACACAGACAGTGTGAGTAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATCTCTTTCCGAGGGGTTACTGTACCACACAGACAGTGTGAGTAA  446

seq1  CCTTGAACTTCTATGAAGCCCAACTACAACTCCCCCGAGCCCAAACAGCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTCTATGAAGCCCAACTACAACTCCCCCGAGCCCAAACAGCC  496

seq1  TATGCAGCCTAGTGCCTCATCTCAGGCCCACAGAGGGAATTATTCAAAGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCCTAGTGCCTCATCTCAGGCCCACAGAGGGAATTATTCAAAGA  546

seq1  GAGCCAAACAAACAGAGATCCGTTACCACACTTGCAATGGTGGCAGAGCA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACAAACAGAGATCCGTTACCACACTTGCAATGGTGGCAGAGCA  596

seq1  ATCCTCAGAACCAGCTGGGGGTCTGGTTGGACCCTATCCACTATTCCTGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGAACCAGCTGGGGGTCTGGTTGGACCCTATCCACTATTCCTGT  646

seq1  GTGCCACCAAGGTCTGCTTCTCTTCCAGTCATCATGGCAATTTGTGTACC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCAAGGTCTGCTTCTCTTCCAGTCATCATGGCAATTTGTGTACC  696

seq1  ATACCTTCCTGTCACCACTTCCGTCCTGAGTGTGCAGGTGTCCTGAGCAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTCCTGTCACCACTTCCGTCCTGAGTGTGCAGGTGTCCTGAGCAT  746

seq1  TTGGGGAGAAGATGCATAGGTGGGTGGCAGTGTTAGGAGTTAGGCAGGAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAGATGCATAGGTGGGTGGCAGTGTTAGGAGTTAGGCAGGAG  796

seq1  CATGCAGGAGGGCTCTTATTAGGGAGAAGCAAAAACCAATTGCTTCTGTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGAGGGCTCTTATTAGGGAGAAGCAAAAACCAATTGCTTCTGTT  846

seq1  CTTAATGGGGCTAGGGGGGTTCTCACTGGTTACGACAGAAATAAACCAGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGGGCTAGGGGGGTTCTCACTGGTTACGACAGAAATAAACCAGC  896

seq1  TTAAAATCTCTCCCTCACCCGCAGACAGCGAGCATCGGAGTGACTTACCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTCTCCCTCACCCGCAGACAGCGAGCATCGGAGTGACTTACCC  946

seq1  TCACATTGGGCAAGAACCCGGCAGCTGTACCTAAATGACAGAGCAAAAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGGGCAAGAACCCGGCAGCTGTACCTAAATGACAGAGCAAAAGC  996

seq1  ATCTTTCACGCATCTGCAGTCATAGCCGCAGGCTGCTGGGTCAGAGGGTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCACGCATCTGCAGTCATAGCCGCAGGCTGCTGGGTCAGAGGGTT  1046

seq1  TACAGCACCCCAGGGGACTCTTCTCATAATGAAACTGCTTCAAGGAAGAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACCCCAGGGGACTCTTCTCATAATGAAACTGCTTCAAGGAAGAA  1096

seq1  TTC  1088
      |||
seq2  TTC  1099