BAC Information

Click to search

BAC

Clone NameB6Ng01-217D12
Chromosome7 (Build37)
Map Location 88,833,158 - 88,975,757
singlet/doubletdoublet
Overlap geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1
Upstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1
Downstream geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217D12.bB6Ng01-217D12.g
ACCGA033690GA033691
length672993
definitionB6Ng01-217D12.b B6Ng01-217D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,975,085 - 88,975,757)(88,833,158 - 88,834,129)
sequence
gaattcacagagctaagtgaacccctgtgacacaggttcaaaggtatgca
tcatcacacccagccatgttttaaaattacattccatttttatgggatgt
cacactagacatcaagaggtcaaaggataacttgcaggagttagttctct
ccctctaccttgtaggtgcttgggattaaactcgggtcatcaggcttggt
ggcaactgcaactctatttctaaagtcccataacagagaattgaattgta
tatatttcaaaattaatagtagagctttttcggagttttttaatattcct
aaaaatagagattaaaatatgggggtaggggaaaggttctggtatcttgc
ttttgttttcaaagaatcagcttaaatttcttgtccaattccactataaa
ctcggagcgtaggactcttagattgcttgacatctgtaagccggaaggtt
ccccccctccccccccagttattctcgtgtcgtaaagaatcattttctgg
gtcttttccttctgcctataacaagtgccttatcttaggatctatttatt
gctgcagggttcaagaaaggctcccacataatgacaaccacacaggaaca
ctgcccccaaagatatgtagctggcagcacccttcccatttgtttttgag
gggaaaggagttaaacgtgtgt
gaattcaaacctccagcatctctgatgggttggggaccaaatcctgaagc
ctgtgtggttccagattccttccagttcaacagcagaggaaaggacagct
tttgtgcagctcagacccgaataaggaaggtagccaccaagtgtggacgt
gtggactggaggagcacaggaaggattcttagtggcggccagaagcaggc
aagcagtgtgggctcggaagggctcctgaccacgctctgtgtcagggtca
atgcgatcgatgcacaggtccagtccagcaggtttagttagctgtcattt
ggatccctgttgcataatctgaaataacagcttaatgagtgtggctgtaa
gaagcaattcaacaggactgaagtccagtcgttctgataatcactactgc
aatctgggaggcaggaccagggaaaagctgggaggcagggggttgggaaa
gggaagatggctgtgccatcgtaggagctgggcagatgacaactgcagcc
aagtgactcgcgtcagagtaaatcttattttgaatctctgccctctttaa
aattctgtggccacaacccccttgaaggacatgtctgccttctcctctag
accttctagttgtactcttgaaataaaggtgttttttttccccctcatgc
aactgaaagtctcataaaatatgaaactttagagtgccatgcctttgcat
agacaatgtgtgaaactttgtaccttggctgtgcaattttgaatcaagtg
gcttggtgtctctgagctccatttttcttttttaacttttaatttttgaa
acctgggatgcttagaacgaaatgcatatgagtgaatcaagaaagaacag
atcccttgtcccttgttctgtggaacttcatttcttcccagaaggcaaag
aaagaccccacaaggttactgtgggtcaccgttgtgacctttgaaggcca
acctcatgtgttgtgcaccatgccttttttgtggcctcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88975085_88975757
seq2: B6Ng01-217D12.b_47_718 (reverse)

seq1  ACACACGTCTTAACTCCTTTCCCCTCAAAAACAAATGGGAAGGGTGCTGC  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGT-TTAACTCCTTTCCCCTCAAAAACAAATGGGAAGGGTGCTGC  49

seq1  CAGCTACATATCTTTGGGGGCAGTGTTCCTGTGTGGTTGTCATTATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACATATCTTTGGGGGCAGTGTTCCTGTGTGGTTGTCATTATGTGG  99

seq1  GAGCCTTTCTTGAACCCTGCAGCAATAAATAGATCCTAAGATAAGGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTCTTGAACCCTGCAGCAATAAATAGATCCTAAGATAAGGCACT  149

seq1  TGTTATAGGCAGAAGGAAAAGACCCAGAAAATGATTCTTTACGACACGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGGCAGAAGGAAAAGACCCAGAAAATGATTCTTTACGACACGAG  199

seq1  AATAACTGGGGGGGGAGGGGGGGAACCTTCCGGCTTACAGATGTCAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGGGGGGGAGGGGGGGAACCTTCCGGCTTACAGATGTCAAGCA  249

seq1  ATCTAAGAGTCCTACGCTCCGAGTTTATAGTGGAATTGGACAAGAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAGTCCTACGCTCCGAGTTTATAGTGGAATTGGACAAGAAATTT  299

seq1  AAGCTGATTCTTTGAAAACAAAAGCAAGATACCAGAACCTTTCCCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATTCTTTGAAAACAAAAGCAAGATACCAGAACCTTTCCCCTACC  349

seq1  CCCATATTTTAATCTCTATTTTTAGGAATATTAAAAAACTCCGAAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTTAATCTCTATTTTTAGGAATATTAAAAAACTCCGAAAAAGC  399

seq1  TCTACTATTAATTTTGAAATATATACAATTCAATTCTCTGTTATGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATTAATTTTGAAATATATACAATTCAATTCTCTGTTATGGGACT  449

seq1  TTAGAAATAGAGTTGCAGTTGCCACCAAGCCTGATGACCCGAGTTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAGAGTTGCAGTTGCCACCAAGCCTGATGACCCGAGTTTAATC  499

seq1  CCAAGCACCTACAAGGTAGAGGGAGAGAACTAACTCCTGCAAGTTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACCTACAAGGTAGAGGGAGAGAACTAACTCCTGCAAGTTATCCT  549

seq1  TTGACCTCTTGATGTCTAGTGTGACATCCCATAAAAATGGAATGTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTTGATGTCTAGTGTGACATCCCATAAAAATGGAATGTAATTT  599

seq1  TAAAACATGGCTGGGTGTGATGATGCATACCTTTGAACCTGTGTCACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGGCTGGGTGTGATGATGCATACCTTTGAACCTGTGTCACAGG  649

seq1  GGTTCACTTAGCTCTGTGAATTC  673
      |||||||||||||||||||||||
seq2  GGTTCACTTAGCTCTGTGAATTC  672

seq1: chr7_88833158_88834129
seq2: B6Ng01-217D12.g_65_1052

seq1  GAATTCAAACCTCCAGCATCTCTGATGGGTTGGGGACCAAATCCTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTCCAGCATCTCTGATGGGTTGGGGACCAAATCCTGAAGC  50

seq1  CTGTGTGGTTCCAGATTCCTTCCAGTTCAACAGCAGAGGAAAGGACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTTCCAGATTCCTTCCAGTTCAACAGCAGAGGAAAGGACAGCT  100

seq1  TTTGTGCAGCTCAGACCCGAATAAGGAAGGTAGCCACCAAGTGTGGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAGCTCAGACCCGAATAAGGAAGGTAGCCACCAAGTGTGGACGT  150

seq1  GTGGACTGGAGGAGCACAGGAAGGATTCTTAGTGGCGGCCAGAAGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGGAGGAGCACAGGAAGGATTCTTAGTGGCGGCCAGAAGCAGGC  200

seq1  AAGCAGTGTGGGCTCGGAAGGGCTCCTGACCACGCTCTGTGTCAGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGTGGGCTCGGAAGGGCTCCTGACCACGCTCTGTGTCAGGGTCA  250

seq1  ATGCGATCGATGCACAGGTCCAGTCCAGCAGGTTTAGTTAGCTGTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGATCGATGCACAGGTCCAGTCCAGCAGGTTTAGTTAGCTGTCATTT  300

seq1  GGATCCCTGTTGCATAATCTGAAATAACAGCTTAATGAGTGTGGCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCTGTTGCATAATCTGAAATAACAGCTTAATGAGTGTGGCTGTAA  350

seq1  GAAGCAATTCAACAGGACTGAAGTCCAGTCGTTCTGATAATCACTACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTCAACAGGACTGAAGTCCAGTCGTTCTGATAATCACTACTGC  400

seq1  AATCTGGGAGGCAGGACCAGGGAAAAGCTGGGAGGCAGGGGGTTGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGAGGCAGGACCAGGGAAAAGCTGGGAGGCAGGGGGTTGGGAAA  450

seq1  GGGAAGATGGCTGTGCCATCGTAGGAGCTGGGCAGATGACAACTGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGGCTGTGCCATCGTAGGAGCTGGGCAGATGACAACTGCAGCC  500

seq1  AAGTGACTCGCGTCAGAGTAAATCTTATTTTGAATCTCTGCCCTCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCGCGTCAGAGTAAATCTTATTTTGAATCTCTGCCCTCTTTAA  550

seq1  AATTCTGTGGCCACAACCCCCTTGAAGGACATGTCTGCCTTCTCCTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGGCCACAACCCCCTTGAAGGACATGTCTGCCTTCTCCTCTAG  600

seq1  ACC-TCTAGTTGTACTCTTGAAATAAAGGTG-TTTTTTTCCCCCTCATGC  648
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCTTCTAGTTGTACTCTTGAAATAAAGGTGTTTTTTTTCCCCCTCATGC  650

seq1  AACTGAAAGTCTCATAAAATATG-AACTTTAGAGTGCCATGCCTTTGCAT  697
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACTGAAAGTCTCATAAAATATGAAACTTTAGAGTGCCATGCCTTTGCAT  700

seq1  AGACAATGTGTGAAAC-TTGTACCTTGGCTGTGCAA-TTTGAATCAAGTG  745
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AGACAATGTGTGAAACTTTGTACCTTGGCTGTGCAATTTTGAATCAAGTG  750

seq1  GCTTGGTGTCTCTGAGCTCCA-TTTTCTTTTTTAACTTTTAATTTTTGAA  794
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTGGTGTCTCTGAGCTCCATTTTTCTTTTTTAACTTTTAATTTTTGAA  800

seq1  A-CTTGGATGCTTAG-ACGAAATGCATATGAGTG-ATCAAGAAAGAACAG  841
      | || |||||||||| |||||||||||||||||| |||||||||||||||
seq2  ACCTGGGATGCTTAGAACGAAATGCATATGAGTGAATCAAGAAAGAACAG  850

seq1  ATCCCTTGTCCCTTGTTCTGTGGAAC-TCA-TTCTTCCACAGAAGGC-AA  888
      |||||||||||||||||||||||||| ||| ||||||| |||||||| ||
seq2  ATCCCTTGTCCCTTGTTCTGTGGAACTTCATTTCTTCC-CAGAAGGCAAA  899

seq1  GAAAGACCCCACAAGGTCACTGT-GGTCACCGTTGTGACCTT--GAGGCC  935
      ||||||||||||||||| ||||| ||||||||||||||||||   |||||
seq2  GAAAGACCCCACAAGGTTACTGTGGGTCACCGTTGTGACCTTTGAAGGCC  949

seq1  AACCTCATGTG-TGTGCACCATGCC-TTTTTGTGGCCTC  972
      ||||||||||| ||||||||||||| |||||||||||||
seq2  AACCTCATGTGTTGTGCACCATGCCTTTTTTGTGGCCTC  988