BAC Information

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BAC

Clone NameB6Ng01-217D16
Chromosome7 (Build37)
Map Location 3,836,156 - 4,018,084
singlet/doubletdoublet
Overlap geneLOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217D16.bB6Ng01-217D16.g
ACCGA033698GA033699
length461935
definitionB6Ng01-217D16.b B6Ng01-217D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,017,618 - 4,018,084)(3,836,156 - 3,837,085)
sequence
aaggaaatcgactatagtgaattcaagacttccctggggtatgtgacacc
acatttaaaacaaaaaacaaaaaacaaaggagaataagaaggagaaatta
aaaagtaatatgtatatgtatgaaaatttaaaagtgtaatataaaaatat
ttaatttcactatgtagactataaaaagtttctctgttgaggtttgagaa
acatagtgatctatgaatgtaatggtaagtcattaggaattggtttataa
tatatttctttattttcatatatgcagtcaaaatacccatatacataaaa
taaaatgaaactatgtttaaaaacagtttaaagggttggagctataatac
aacagcagagtgcttgactgacatgtgcgagaccctaaattcattccttt
ctaatgaaagaaaaaagagatgggagtgtggaaggtggaagggaaagtat
tagggagggag
gaattctctttattcatctgcctaggttttggacatgttctagcatgaac
agatgttctcagctggtcctgagaatagtagaagaagaggagtaggatgt
atctctacttaagtggccgtagtgtttcttctgagttccactctcattca
ttggagatgcccatcattttcaccatataagcttatagagttctgggatg
aacgtttattgttatacagctggttcccctctcttattcttactaaattc
ttcaaacattgtgctaataaaaaagcaattacatactagtgagaccagaa
aattctgagtatggtgattctcatgagcccatcagaggttgtacagaatc
agattctcagtgtgtttttttaagtaagtgttggttcccttgtcacgttc
agactcttccatttctcccttgatctgaccttacttctgatctctttgtc
tctgtctctgtctctccctctctctctgtctctctgtctgtctgtctgtc
tctctctctctctgtgtgtgtgtgtgtaaaacaaacaaacaaaaaaagag
agtggatgtttatccagtgggattttccctaagagtccctcaataccagg
actagggcatgttaagcatagatcctaagactgactgacatgactctcac
ttttcttggctttagaagcaaaaagtcattgcaacaacagtgtgtgctcc
actgtgagaagagagtggtgacggttctccatcactttagaagatcccag
ggtcaaggttaaagagtccctggaggtcccaatctccaaccttctctttt
tcagacagtgtaccaaggcgtagattaagacatttcgtagctgtcactgc
tcagtgaagtatgaatggtacagtcactttcttctatatttcacttcaca
agattaagggtcggcagatttcacaaagcaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4017618_4018084
seq2: B6Ng01-217D16.b_46_512 (reverse)

seq1  CTCCCTCCCTAATACTTTCCCTTCCACCTTCCACACTCCCATCTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTAATACTTTCCCTTCCACCTTCCACACTCCCATCTCTTTTT  50

seq1  TCTTTCATTAGAAAGGAATGAATTTAGGGTCTCGCACATGTCAGTCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTAGAAAGGAATGAATTTAGGGTCTCGCACATGTCAGTCAAGC  100

seq1  ACTCTGCTGTTGTATTATAGCTCCAACCCTTTAAACTGTTTTTAAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGTTGTATTATAGCTCCAACCCTTTAAACTGTTTTTAAACATA  150

seq1  GTTTCATTTTATTTTATGTATATGGGTATTTTGACTGCATATATGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTTATTTTATGTATATGGGTATTTTGACTGCATATATGAAAAT  200

seq1  AAAGAAATATATTATAAACCAATTCCTAATGACTTACCATTACATTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATATTATAAACCAATTCCTAATGACTTACCATTACATTCATA  250

seq1  GATCACTATGTTTCTCAAACCTCAACAGAGAAACTTTTTATAGTCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTATGTTTCTCAAACCTCAACAGAGAAACTTTTTATAGTCTACAT  300

seq1  AGTGAAATTAAATATTTTTATATTACACTTTTAAATTTTCATACATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTAAATATTTTTATATTACACTTTTAAATTTTCATACATATAC  350

seq1  ATATTACTTTTTAATTTCTCCTTCTTATTCTCCTTTGTTTTTTGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTTTTTAATTTCTCCTTCTTATTCTCCTTTGTTTTTTGTTTTTT  400

seq1  GTTTTAAATGTGGTGTCACATACCCCAGGGAAGTCTTGAATTCACTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATGTGGTGTCACATACCCCAGGGAAGTCTTGAATTCACTATAG  450

seq1  TCGATTTCCTTGAATTC  467
      |||||||||||||||||
seq2  TCGATTTCCTTGAATTC  467

seq1: chr7_3836156_3837085
seq2: B6Ng01-217D16.g_67_1001

seq1  GAATTCTCTTTATTCATCTGCCTAGGTTTTGGACATGTTCTAGCATGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTATTCATCTGCCTAGGTTTTGGACATGTTCTAGCATGAAC  50

seq1  AGATGTTCTCAGCTGGTCCTGAGAATAGTAGAAGAAGAGGAGTAGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCTCAGCTGGTCCTGAGAATAGTAGAAGAAGAGGAGTAGGATGT  100

seq1  ATCTCTACTTAAGTGGCCGTAGTGTTTCTTCTGAGTTCCACTCTCATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACTTAAGTGGCCGTAGTGTTTCTTCTGAGTTCCACTCTCATTCA  150

seq1  TTGGAGATGCCCATCATTTTCACCATATAAGCTTATAGAGTTCTGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGCCCATCATTTTCACCATATAAGCTTATAGAGTTCTGGGATG  200

seq1  AACGTTTATTGTTATACAGCTGGTTCCCCTCTCTTATTCTTACTAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTATTGTTATACAGCTGGTTCCCCTCTCTTATTCTTACTAAATTC  250

seq1  TTCAAACATTGTGCTAATAAAAAAGCAATTACATACTAGTGAGACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATTGTGCTAATAAAAAAGCAATTACATACTAGTGAGACCAGAA  300

seq1  AATTCTGAGTATGGTGATTCTCATGAGCCCATCAGAGGTTGTACAGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGTATGGTGATTCTCATGAGCCCATCAGAGGTTGTACAGAATC  350

seq1  AGATTCTCAGTGTGTTTTTTTAAGTAAGTGTTGGTTCCCTTGTCACGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCAGTGTGTTTTTTTAAGTAAGTGTTGGTTCCCTTGTCACGTTC  400

seq1  AGACTCTTCCATTTCTCCCTTGATCTGACCTTACTTCTGATCTCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTCCATTTCTCCCTTGATCTGACCTTACTTCTGATCTCTTTGTC  450

seq1  TCTGTCTCTGTCTCTCCCTCTCTCTCTGTCTCTCTGTCTGTCTGTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCCCTCTCTCTCTGTCTCTCTGTCTGTCTGTCTGTC  500

seq1  TCTCTCTCTCTCTGTGTGTGTGTGTGTAAAACAAACAAACAAAAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTGTGTGTGTGTGTGTAAAACAAACAAACAAAAAAAGAG  550

seq1  AGTGGATGTTTATCCAGTGGGATTTTCCCTAAGAGTCCCTCAATACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGTTTATCCAGTGGGATTTTCCCTAAGAGTCCCTCAATACCAGG  600

seq1  ACTAGGGCATGTTAAGCATAGATCCTAAGACTGACTGACATGACTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGCATGTTAAGCATAGATCCTAAGACTGACTGACATGACTCTCAC  650

seq1  TTTTCTTGGCTTTAGAAGC-AAAAGTCATTGCAACAACAGTGTGTGCTCC  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTCTTGGCTTTAGAAGCAAAAAGTCATTGCAACAACAGTGTGTGCTCC  700

seq1  ACTGTGAGAAGAGAGTGGTGACGGTTCTCCATCACTTTAGAAGATCCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGAAGAGAGTGGTGACGGTTCTCCATCACTTTAGAAGATCCCAG  750

seq1  GGTCAAGGTTAAAGAGTCCCTGGAGGTCCC-ATCTCCAAACCTTCTCTTT  798
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  GGTCAAGGTTAAAGAGTCCCTGGAGGTCCCAATCTCC-AACCTTCTCTTT  799

seq1  TTCAGACAGGTGTACCAAGGCGTAGATTAAGACA-TTCGTAGCTGTCACT  847
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TTCAGACA-GTGTACCAAGGCGTAGATTAAGACATTTCGTAGCTGTCACT  848

seq1  GCTCAGTGAAGTATGAATGGTACAGTCAC-TTCTTCTATATTTCAC-TCA  895
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GCTCAGTGAAGTATGAATGGTACAGTCACTTTCTTCTATATTTCACTTCA  898

seq1  CAAGA-TAAAGGTC-GCAGATTTCACAAAGCAATAGG  930
      ||||| ||| |||| |||||||||||||||||||| |
seq2  CAAGATTAAGGGTCGGCAGATTTCACAAAGCAATAAG  935