BAC Information

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BAC

Clone NameB6Ng01-217G16
Chromosome7 (Build37)
Map Location 17,298,927 - 17,441,764
singlet/doubletdoublet
Overlap geneLOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2
Upstream geneObox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641
Downstream geneDact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G16.bB6Ng01-217G16.g
ACCGA033834GA033835
length1,0911,084
definitionB6Ng01-217G16.b B6Ng01-217G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,440,680 - 17,441,764)(17,298,927 - 17,299,998)
sequence
gaattcaactcagatcttcttcagggcaagtgctcttaactgccgagcca
tctgtgcagcccaccaagtcaggaggaagggggtcctgcgccgactgact
taccacattctcttggatctgactgttggacacggagatactcagagacg
cttgtcctaggaagaggggaagagagaagtgagcgagctctgggctcagc
acaggtgtcacctgtgcctccaaaggctacacttggaaccttagtttcgt
cgtctgggaaatggaatacaagaaccactacggagctgaccagttgtacc
agaggctccatatgggacctcacgattctatgcctggcattttacccgct
atcctcagtgccgtagaaagaaggcagcctgccttcctccaggcttgttc
cttatccaggatgtctttcagcctctttagtaccacctctagcaacccag
gtagggacttactgtgcggtgtgtgccccggggcactgggcgcatcttgg
aggataacgggcatcagtgcctggcggatggctgtctcccaaccccgaac
ggcctctgttccctgtccacttggccctcccggggccccgccaggggttt
cgcccacaaagtaggtgacattggccgtgatgatctcgaagcagtgtggg
ttggtgcccgggggtacgaggctgaagttctgagccggttccaccgcaag
gatttcagacagcgggatttcctggcaaggggtggaactgtcagtgtagg
caaacctattgggccatccctgcagctcccctgttctcagagttcaataa
ggacagacctggttctacgtggacaggtggggaaaggcctcccagccgta
cccatgctaatccatgagagcagttagctagccaggagactatggagcag
tacagaagaaggctgctgttgcccatcacattgggacagcgcctgggcac
actgaaaggcacttgataaatgaaggacatcaggggcacaccaaaaaagc
ttggatttgtgttgcgggcctagggagccatggaaagcttagaacatgga
gtttcaagttcattgccatcgtgtggaaagtcactgagaca
gaattcagtctccaacactggaaacgatcttcccagagtcacctggggtt
cagcctggtacaagctgggcggccagagcttcctggtgctcacctctccg
tgaggagatcatggtttcctcggccaggctctgcctgacacccacagact
ctctccgggccatgttcctggtgaagcccggagaatttcggctcaggctg
gtgtccttgggttgagttacctaccacagcccctcctcccggactcccag
ggtggagtccgatgaagagttgaaatccactgcagtttgtctctgccatg
tgtgtcctgcactaaatgctcaaacacccatatggggacacaatacaaaa
ggagacaaacacaaatcaggcccgactgtactgagtgtgtaaattagaat
taacccacccagtgcccagagatctctgtgtacatgagtgaacatatatg
tatcagtttgttttaaacatatgcacctggtcttcatagagtgttgaatc
cagtgtgtttggggtgatgttctataatggcagggatcctcctgagtata
ttgtctctctacctctgtgtttaggctccagtctatggaaatcaatggct
agtacacattatgcattttcatggctgatgcggtgagcagtggtggcgca
cgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagtt
tgaagccagcctagtctacaaagtgagctccaggacagccagagctacac
agagaaaccctgtcctgaaaaacaaaaacaaaaacgaaacaaaacaaaac
aaaacaaaagaacactagagctaggcaggtatcaactctctatgttagtt
ggtctaatgtcctgtcagtaaccgagagattatcacttgccacgttctgc
ctggggccactccttccaacaggcccgctctcttggccaatggtgttcaa
catctaactaccccattggcaacttcctttctcttccttctcctccctcc
tccctttcctcatgggtctctggcttcagaccccaggacttgggggacca
aaacccacctacctctcttctggccctgctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17440680_17441764
seq2: B6Ng01-217G16.b_50_1140 (reverse)

seq1  TGTCTCGTGGACTTTCCACAC-AGTGCCATGAACTTGAACCTCCTTGTTC  49
      ||||||   |||||||||||| |  || ||||||||||| |||| |||||
seq2  TGTCTCAGTGACTTTCCACACGATGGCAATGAACTTGAAACTCCATGTTC  50

seq1  TAAGCCTTTCCATGGCTCCCTAGGGCCCGC-ACACAAATTCCAGCCTTTT  98
      |||| ||||||||||||||||| ||||||| |||||||| | ||| ||||
seq2  TAAG-CTTTCCATGGCTCCCTA-GGCCCGCAACACAAATCCAAGCTTTTT  98

seq1  TTGTGTGGCCCCTGATGTCCTTCATTTATCAAGTGCC-TTCAGTGTG-CC  146
      | |||| |||||||||||||||||||||||||||||| ||||||||| ||
seq2  TGGTGT-GCCCCTGATGTCCTTCATTTATCAAGTGCCTTTCAGTGTGCCC  147

seq1  AGGCGCTGTCCC-ATGTGATGGGC-ACAGCAGCCTTCTTCTGTGCTGCTC  194
      |||||||||||| ||||||||||| |||||||||||||||||| ||||||
seq2  AGGCGCTGTCCCAATGTGATGGGCAACAGCAGCCTTCTTCTGTACTGCTC  197

seq1  CATAGTCTCCTGGCTAGCTAACTGCTCTCATGG-TTAGCATGGGTACGGC  243
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATAGTCTCCTGGCTAGCTAACTGCTCTCATGGATTAGCATGGGTACGGC  247

seq1  TGGGAGGCCTTTCCCCACCTGTCCACGTAG-ACCAGGTCTGTCCTTATTG  292
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGAGGCCTTTCCCCACCTGTCCACGTAGAACCAGGTCTGTCCTTATTG  297

seq1  -ACTCTGAGAACAGGGGAGCTGCAGGGATGGCCCAATAGGTTTGCCTACA  341
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGAACAGGGGAGCTGCAGGGATGGCCCAATAGGTTTGCCTACA  347

seq1  CTGACAGTTCCACCCCTTGCCAGGAAATCCCGCTGTCTGAAATCCTTGCG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTCCACCCCTTGCCAGGAAATCCCGCTGTCTGAAATCCTTGCG  397

seq1  GTGGAACCGGCTCAGAACTTCAGCCTCGTACCCCCGGGCACCAACCCACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACCGGCTCAGAACTTCAGCCTCGTACCCCCGGGCACCAACCCACA  447

seq1  CTGCTTCGAGATCATCACGGCCAATGTCACCTACTTTGTGGGCGAAACCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCGAGATCATCACGGCCAATGTCACCTACTTTGTGGGCGAAACCC  497

seq1  CTGGCGGGGCCCCGGGAGGGCCAAGTGGACAGGGAACAGAGGCCGTTCGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGGGCCCCGGGAGGGCCAAGTGGACAGGGAACAGAGGCCGTTCGG  547

seq1  GGTTGGGAGACAGCCATCCGCCAGGCACTGATGCCCGTTATCCTCCAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAGACAGCCATCCGCCAGGCACTGATGCCCGTTATCCTCCAAGA  597

seq1  TGCGCCCAGTGCCCCGGGGCACACACCGCACAGTAAGTCCCTACCTGGGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCAGTGCCCCGGGGCACACACCGCACAGTAAGTCCCTACCTGGGT  647

seq1  TGCTAGAGGTGGTACTAAAGAGGCTGAAAGACATCCTGGATAAGGAACAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGGTGGTACTAAAGAGGCTGAAAGACATCCTGGATAAGGAACAA  697

seq1  GCCTGGAGGAAGGCAGGCTGCCTTCTTTCTACGGCACTGAGGATAGCGGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGGAAGGCAGGCTGCCTTCTTTCTACGGCACTGAGGATAGCGGG  747

seq1  TAAAATGCCAGGCATAGAATCGTGAGGTCCCATATGGAGCCTCTGGTACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCCAGGCATAGAATCGTGAGGTCCCATATGGAGCCTCTGGTACA  797

seq1  ACTGGTCAGCTCCGTAGTGGTTCTTGTATTCCATTTCCCAGACGACGAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAGCTCCGTAGTGGTTCTTGTATTCCATTTCCCAGACGACGAAA  847

seq1  CTAAGGTTCCAAGTGTAGCCTTTGGAGGCACAGGTGACACCTGTGCTGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTCCAAGTGTAGCCTTTGGAGGCACAGGTGACACCTGTGCTGAG  897

seq1  CCCAGAGCTCGCTCACTTCTCTCTTCCCCTCTTCCTAGGACAAGCGTCTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTCGCTCACTTCTCTCTTCCCCTCTTCCTAGGACAAGCGTCTC  947

seq1  TGAGTATCTCCGTGTCCAACAGTCAGATCCAAGAGAATGTGGTAAGTCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCTCCGTGTCCAACAGTCAGATCCAAGAGAATGTGGTAAGTCAG  997

seq1  TCGGCGCAGGACCCCCTTCCTCCTGACTTGGTGGGCTGCACAGATGGCTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGCAGGACCCCCTTCCTCCTGACTTGGTGGGCTGCACAGATGGCTC  1047

seq1  GGCAGTTAAGAGCACTTGCCCTGAAGAAGATCTGAGTTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTAAGAGCACTTGCCCTGAAGAAGATCTGAGTTGAATTC  1091

seq1: chr7_17298927_17299998
seq2: B6Ng01-217G16.g_67_1150

seq1  GAATTCAGTCTCCAACACTGGAAACGATCTTCCCAGAGTCACCTGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCCAACACTGGAAACGATCTTCCCAGAGTCACCTGGGGTT  50

seq1  CAGCCTGGTACAAGCTGGGCGGCCAGAGCTTCCTGGTGCTCACCTCTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTACAAGCTGGGCGGCCAGAGCTTCCTGGTGCTCACCTCTCCG  100

seq1  TGAGGAGATCATGGTTTCCTCGGCCAGGCTCTGCCTGACACCCACAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGATCATGGTTTCCTCGGCCAGGCTCTGCCTGACACCCACAGACT  150

seq1  CTCTCCGGGCCATGTTCCTGGTGAAGCCCGGAGAATTTCGGCTCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGGGCCATGTTCCTGGTGAAGCCCGGAGAATTTCGGCTCAGGCTG  200

seq1  GTGTCCTTGGGTTGAGTTACCTACCACAGCCCCTCCTCCCGGACTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGGGTTGAGTTACCTACCACAGCCCCTCCTCCCGGACTCCCAG  250

seq1  GGTGGAGTCCGATGAAGAGTTGAAATCCACTGCAGTTTGTCTCTGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTCCGATGAAGAGTTGAAATCCACTGCAGTTTGTCTCTGCCATG  300

seq1  TGTGTCCTGCACTAAATGCTCAAACACCCATATGGGGACACAATACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGCACTAAATGCTCAAACACCCATATGGGGACACAATACAAAA  350

seq1  GGAGACAAACACAAATCAGGCCCGACTGTACTGAGTGTGTAAATTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAACACAAATCAGGCCCGACTGTACTGAGTGTGTAAATTAGAAT  400

seq1  TAACCCACCCAGTGCCCAGAGATCTCTGTGTACATGAGTGAACATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACCCAGTGCCCAGAGATCTCTGTGTACATGAGTGAACATATATG  450

seq1  TATCAGTTTGTTTTAAACATATGCACCTGGTCTTCATAGAGTGTTGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTGTTTTAAACATATGCACCTGGTCTTCATAGAGTGTTGAATC  500

seq1  CAGTGTGTTTGGGGTGATGTTCTATAATGGCAGGGATCCTCCTGAGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTTTGGGGTGATGTTCTATAATGGCAGGGATCCTCCTGAGTATA  550

seq1  TTGTCTCTCTACCTCTGTGTTTAGGCTCCAGTCTATGGAAATCAATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCTACCTCTGTGTTTAGGCTCCAGTCTATGGAAATCAATGGCT  600

seq1  AGTACACATTATGCATTTTCATGGCTGATGCGGTGAGCAGTGGTGGCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACATTATGCATTTTCATGGCTGATGCGGTGAGCAGTGGTGGCGCA  650

seq1  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  700

seq1  TGAAGCCAGCCTAGTCTACAAAGTGAGCTCCAGGACAGCCAGAGCTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGCCTAGTCTACAAAGTGAGCTCCAGGACAGCCAGAGCTACAC  750

seq1  AGAGAAACCCTGTCCTGAAAAACAAAAACAAAAACGAAACAAAACAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCCTGAAAAACAAAAACAAAAACGAAACAAAACAAAAC  800

seq1  AAAACAAAAGAACACTAGAGCTAGGCAGGTATCAACTCTCTATGTTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGAACACTAGAGCTAGGCAGGTATCAACTCTCTATGTTAGTT  850

seq1  GGTCTAATGTCCTGTCAGTAACCGAGAGA-TATCACTTGCCACGTTCTGC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTCTAATGTCCTGTCAGTAACCGAGAGATTATCACTTGCCACGTTCTGC  900

seq1  CT-GGGCCACTCC-TCCAACAGGCCCGCTCTCTTGGCCA--TGTGCTCAC  945
      || |||||||||| |||||||||||||||||||||||||   ||| ||| 
seq2  CTGGGGCCACTCCTTCCAACAGGCCCGCTCTCTTGGCCAATGGTGTTCAA  950

seq1  AATCTAACTACCCCA-TGGCAACTTCC-TCCTCCTCCTTCTCCTCCCTCC  993
       |||||||||||||| ||||||||||| | ||| ||||||||||||||||
seq2  CATCTAACTACCCCATTGGCAACTTCCTTTCTCTTCCTTCTCCTCCCTCC  1000

seq1  TCCC-TTCCTCAT-GGTCTCT-GCCTCAGACCCCAAGACT--GGGGACCA  1038
      |||| |||||||| ||||||| || |||||||||| ||||  ||||||||
seq2  TCCCTTTCCTCATGGGTCTCTGGCTTCAGACCCCAGGACTTGGGGGACCA  1050

seq1  AAACCCCACCTACCTCTCTTCT-GCCCTGCTACAG  1072
      ||| |||||||||||||||||| ||||||||||||
seq2  AAA-CCCACCTACCTCTCTTCTGGCCCTGCTACAG  1084