BAC Information

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BAC

Clone NameB6Ng01-217M17
Chromosome7 (Build37)
Map Location 80,565,997 - 80,693,799
singlet/doubletdoublet
Overlap geneChd2
Upstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma
Downstream gene1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M17.bB6Ng01-217M17.g
ACCGA034099GA034100
length1,1741,151
definitionB6Ng01-217M17.b B6Ng01-217M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,565,997 - 80,567,177)(80,692,653 - 80,693,799)
sequence
gaattctttcctaaataccacaccgctcactgccctccagaacaggggaa
tttgcatctcaaatgtccggggccagcaccttaagtctgagtgctccagt
cttccttgtgcatgacagttgctctgagttaagtctgagtgctcccatct
tccttgtgcatgacagttggtctgagttaagtctgagtgctcccatcttc
cttgtgcatgacagttggtctgagttaagtctgagtgctcccgtcttcct
tgtgcatgacagttgctctgagttaagtctgagtgctcccatcttccttg
tgcatgacagttgctctggtgcagacctgggccgaggccagtcagcctgg
caaccgaagagctttcgcatagcctgtgagctactctctctctcccactc
catccccaactgcctatgagtatgtagctcaatgttagggcccttgccta
tggtgtgagagaccttaggctcctgggttgtgctccccccacccccacca
gagcaaaaacaaggaaaagaactcttaggcttctcatatcacaagccaga
gtttgtaagggtaaaaaccagaaaggactgatcagcgaaatctgataact
gcccgggtaaatttggagggaaaacttatctgaagactggcagaggtcca
ggagagccaggcagcactggagcctgtctctcaggcccaagcatggctca
gagcagcggctgggcatgtgagcttgggcagcaggctgacttggcatcgg
agctgggctctgcctgttgctagctgtgtggtctcccttggatttttttt
ttcttgagccttagattcctgatctgtaaaatggaattacacgtagccac
ctccagggtcctgtggaaatctaatgagctaattcctggcacagatgccc
aacatcaacaagagaacccaccgaaagaggtcccggtggcagtgtaccca
ggactttagtcattgatgattccatttgtctcgggacaaatcctgtattc
ttgctggggagaataaaccaatagtttgatacttacataattctacgacc
cacatggcagcagactccaggtatgagaagcaggtcattctgagtgtccg
ccttaaggacgaagaagggatgctcctctttggaggttaaatgccatgtg
actacctccacacgagtttctgga

gaattcagagatttacctacctggctctggtttcggagtgctgagattaa
aggcatatgtccaccacaaatggggtcagaaaataaaagaccaaaaactc
ccatttggacttgtttctagtgccctgggtttattgattgattgattgcg
catttacctgtattgtttagattctgttgtgctttctcattgcagtttca
gggctgagagtacttgtactgaaatggatacacagcttagaacattcact
gaaaacaggccatggtcctagagtctgaacttgctactttggttctttct
agataatagaaattaattctaattaatttctaattgtaattagttctgat
aaattaactgaacttaaaacttcaagactgaaagtttagccttattgaca
tagaaattgctctttgaaagataatattaccacctctgtgaaatagtttt
gttttgttttatttttaaattccaaactagacaagtagtgggaaagagta
aaatgggaaggttgttataaatcattttgggtgaattgccaaaaggattt
atttgttcattggcaacaaacttaagataattgtctatagctgcttcata
gcaataaagacacttgggaatccagattctgcaggatccccctctcccct
ttccagttattgccactgagactgcactggctggctatcaatggcctacg
aagcaaggtttgtgtgtttcctgagggagagtgaggaaggagaccccaaa
tttgtctactacaggtgtctagttccctgtgtggttacagttaagaccat
agatgcctggcactagctactccgtaaatattttgttggtttgttgtgtt
aatttagcttttatttaaccattattaactagtgctttgagaataatgaa
aggcaaaattaaaattattaaaatatgtttttaatgtaaataattatagc
ttgtgttttgaaagctaaatttggtcatattaaaaattagaagtaatcta
atgtacctcccctaacttggtcttttaaacttggtttgtattcagataga
tgtaaactcaaggaagtttactttttatcagtaatgaccttatcccttca
tgaatggaacatagctagtctttctggtacaattttacggttacttaaag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80565997_80567177
seq2: B6Ng01-217M17.b_49_1222

seq1  GAATTCTTTCCTAAATACCACACCGCTCACTGCCCTCCAGAACAGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTAAATACCACACCGCTCACTGCCCTCCAGAACAGGGGAA  50

seq1  TTTGCATCTCAAATGTCCGGGGCCAGCACCTTAAGTCTGAGTGCTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTCAAATGTCCGGGGCCAGCACCTTAAGTCTGAGTGCTCCAGT  100

seq1  CTTCCTTGTGCATGACAGTTGCTCTGAGTTAAGTCTGAGTGCTCCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTGCATGACAGTTGCTCTGAGTTAAGTCTGAGTGCTCCCATCT  150

seq1  TCCTTGTGCATGACAGTTGGTCTGAGTTAAGTCTGAGTGCTCCCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGCATGACAGTTGGTCTGAGTTAAGTCTGAGTGCTCCCATCTTC  200

seq1  CTTGTGCATGACAGTTGGTCTGAGTTAAGTCTGAGTGCTCCCGTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCATGACAGTTGGTCTGAGTTAAGTCTGAGTGCTCCCGTCTTCCT  250

seq1  TGTGCATGACAGTTGCTCTGAGTTAAGTCTGAGTGCTCCCATCTTCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGACAGTTGCTCTGAGTTAAGTCTGAGTGCTCCCATCTTCCTTG  300

seq1  TGCATGACAGTTGCTCTGGTGCAGACCTGGGCCGAGGCCAGTCAGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACAGTTGCTCTGGTGCAGACCTGGGCCGAGGCCAGTCAGCCTGG  350

seq1  CAACCGAAGAGCTTTCGCATAGCCTGTGAGCTACTCTCTCTCTCCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGAAGAGCTTTCGCATAGCCTGTGAGCTACTCTCTCTCTCCCACTC  400

seq1  CATCCCCAACTGCCTATGAGTATGTAGCTCAATGTTAGGGCCCTTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAACTGCCTATGAGTATGTAGCTCAATGTTAGGGCCCTTGCCTA  450

seq1  TGGTGTGAGAGACCTTAGGCTCCTGGGTTGTGCTCCCCCCACCCCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGAGACCTTAGGCTCCTGGGTTGTGCTCCCCCCACCCCCACCA  500

seq1  GAGCAAAAACAAGGAAAAGAACTCTTAGGCTTCTCATATCACAAGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAACAAGGAAAAGAACTCTTAGGCTTCTCATATCACAAGCCAGA  550

seq1  GTTTGTAAGGGTAAAAACCAGAAAGGACTGATCAGCGAAATCTGATAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAGGGTAAAAACCAGAAAGGACTGATCAGCGAAATCTGATAACT  600

seq1  GCCCGGGTAAATTTGGAGGGAAAACTTATCTGAAGACTGGCAGAGGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTAAATTTGGAGGGAAAACTTATCTGAAGACTGGCAGAGGTCCA  650

seq1  GGAGAGCCAGGCAGCACTGGAGCCTGTCTCTCAGGCCCAAGCATGGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCAGGCAGCACTGGAGCCTGTCTCTCAGGCCCAAGCATGGCTCA  700

seq1  GAGCAGCGGCTGGGCATGTGAGCTTGGGCAGCAGGCTGACTTGGCATCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGGCTGGGCATGTGAGCTTGGGCAGCAGGCTGACTTGGCATCGG  750

seq1  AGCTGGGCTCTGCCTGTTGCTAGCTGTGTGGTCTCCCTTGGATTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTCTGCCTGTTGCTAGCTGTGTGGTCTCCCTTGGATTTTTTTT  800

seq1  TTCTTGAGCCTTAGATTCCTGATCTGTAAAATGGAATTACACGTAGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCCTTAGATTCCTGATCTGTAAAATGGAATTACACGTAGCCAC  850

seq1  CTCCCAGGGTCCTGTGGAAATCTAATGAGCTAATTCCTGGCACAGATGCC  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CCAGGGTCCTGTGGAAATCTAATGAGCTAATTCCTGGCACAGATGCC  899

seq1  CAACATCAACAAGAGAACCCACCGAAAGAGGTCCCGGTGGCAGTGGTACC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACATCAACAAGAGAACCCACCGAAAGAGGTCCCGGTGGCAGT-GTACC  948

seq1  CAGGAACTTAGTCATTGATGAATCCATTTGTCTCGGGACAAATCCTGTAT  1000
      |||||  |||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGGACTTTAGTCATTGATGATTCCATTTGTCTCGGGACAAATCCTGTAT  998

seq1  TCTTGCTGGGGAG-ATAAACCAATAG-TTGATACTTACATAATCTAACGA  1048
      ||||||||||||| |||||||||||| ||||||||||||||||   ||||
seq2  TCTTGCTGGGGAGAATAAACCAATAGTTTGATACTTACATAATTCTACGA  1048

seq1  CCCACATGGCAGCAGACTCCAGG-AAGAGAAGCAGGTACATTCTGAGTGG  1097
      ||||||||||||||||||||||| | ||||||||||| ||||||||||| 
seq2  CCCACATGGCAGCAGACTCCAGGTATGAGAAGCAGGT-CATTCTGAGTGT  1097

seq1  CCGCCTAAGGAAGGAAGAAAAGGGATGCTCCTCTTTGGAGGGGTAAAAGG  1147
      |||||| | | | ||||  |||||||||||||||||||| || |||| | 
seq2  CCGCCTTAAGGACGAAG--AAGGGATGCTCCTCTTTGGA-GGTTAAATGC  1144

seq1  CATGTGTGACTAACTCACCACACGAGTTTCTGGA  1181
      ||  |||||||| ||  |||||||||||||||||
seq2  CA--TGTGACTACCT--CCACACGAGTTTCTGGA  1174


seq1: chr7_80692653_80693799
seq2: B6Ng01-217M17.g_67_1217 (reverse)

seq1  CCTTAAAGTAACAGTAAAATTATTACAGAAAGACTAGCTAATGTT-CATC  49
      |||| ||||||| |||||||| |  |||||||||||||| ||||| ||| 
seq2  CCTTTAAGTAACCGTAAAATTGTACCAGAAAGACTAGCT-ATGTTCCATT  49

seq1  AATGAAGGGATAAGGTCAATTACTGAT-AAAAGTAAACTTTCCTGAGTTT  98
       |||||||||||||||| ||||||||| |||||||||||| | |||||||
seq2  CATGAAGGGATAAGGTC-ATTACTGATAAAAAGTAAACTTCCTTGAGTTT  98

seq1  ACAATCTAATCTAATTACAAACCAAGTTTAAAAGACCAAGTTAGGGGAGG  148
      || |||| |||| | |||||||||||||||||||||||||||||||||||
seq2  AC-ATCT-ATCTGAATACAAACCAAGTTTAAAAGACCAAGTTAGGGGAGG  146

seq1  TACA-TAGATTACTTCTAATTTTTATTATGACCAAATTTAGCTTTC-AAA  196
      |||| |||||||||||||||||||| |||||||||||||||||||| |||
seq2  TACATTAGATTACTTCTAATTTTTAATATGACCAAATTTAGCTTTCAAAA  196

seq1  CAC-AGCTATAATATTTTACATTAAAAACATATTTTAATAATTTT-ATTT  244
      ||| |||||||||  |||||||||||||||||||||||||||||| ||||
seq2  CACAAGCTATAATTATTTACATTAAAAACATATTTTAATAATTTTAATTT  246

seq1  TGCCTTTCATTATTCTCAAAGCACTAGTTAATAAT-GTTTAATAAAAGCT  293
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TGCCTTTCATTATTCTCAAAGCACTAGTTAATAATGGTTAAATAAAAGCT  296

seq1  AAATTAACACAACAAACCAAC-AAATATTTACGGAGTAGCTAGTGCCAGG  342
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAATTAACACAACAAACCAACAAAATATTTACGGAGTAGCTAGTGCCAGG  346

seq1  CATCTATGGTCTTAACTGTAACCACACAGGGAACTAGACACCTGTAGTAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGGTCTTAACTGTAACCACACAGGGAACTAGACACCTGTAGTAG  396

seq1  ACAAATTTGGGGTCTCCTTCCTCACTCTCCCTCAGGAAACACACAAACCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGGGGTCTCCTTCCTCACTCTCCCTCAGGAAACACACAAACCT  446

seq1  TGCTTCGTAGGCCATTGATAGCCAGCCAGTGCAGTCTCAGTGGCAATAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGTAGGCCATTGATAGCCAGCCAGTGCAGTCTCAGTGGCAATAAC  496

seq1  TGGAAAGGGGAGAGGGGGATCCTGCAGAATCTGGATTCCCAAGTGTCTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGGAGAGGGGGATCCTGCAGAATCTGGATTCCCAAGTGTCTTT  546

seq1  ATTGCTATGAAGCAGCTATAGACAATTATCTTAAGTTTGTTGCCAATGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATGAAGCAGCTATAGACAATTATCTTAAGTTTGTTGCCAATGAA  596

seq1  CAAATAAATCCTTTTGGCAATTCACCCAAAATGATTTATAACAACCTTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATCCTTTTGGCAATTCACCCAAAATGATTTATAACAACCTTCC  646

seq1  CATTTTACTCTTTCCCACTACTTGTCTAGTTTGGAATTTAAAAATAAAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTCTTTCCCACTACTTGTCTAGTTTGGAATTTAAAAATAAAAC  696

seq1  AAAACAAAACTATTTCACAGAGGTGGTAATATTATCTTTCAAAGAGCAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACTATTTCACAGAGGTGGTAATATTATCTTTCAAAGAGCAAT  746

seq1  TTCTATGTCAATAAGGCTAAACTTTCAGTCTTGAAGTTTTAAGTTCAGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTCAATAAGGCTAAACTTTCAGTCTTGAAGTTTTAAGTTCAGTT  796

seq1  AATTTATCAGAACTAATTACAATTAGAAATTAATTAGAATTAATTTCTAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCAGAACTAATTACAATTAGAAATTAATTAGAATTAATTTCTAT  846

seq1  TATCTAGAAAGAACCAAAGTAGCAAGTTCAGACTCTAGGACCATGGCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAAGAACCAAAGTAGCAAGTTCAGACTCTAGGACCATGGCCTG  896

seq1  TTTTCAGTGAATGTTCTAAGCTGTGTATCCATTTCAGTACAAGTACTCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGAATGTTCTAAGCTGTGTATCCATTTCAGTACAAGTACTCTC  946

seq1  AGCCCTGAAACTGCAATGAGAAAGCACAACAGAATCTAAACAATACAGGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAAACTGCAATGAGAAAGCACAACAGAATCTAAACAATACAGGT  996

seq1  AAATGCGCAATCAATCAATCAATAAACCCAGGGCACTAGAAACAAGTCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGCAATCAATCAATCAATAAACCCAGGGCACTAGAAACAAGTCCA  1046

seq1  AATGGGAGTTTTTGGTCTTTTATTTTCTGACCCCATTTGTGGTGGACATA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGTTTTTGGTCTTTTATTTTCTGACCCCATTTGTGGTGGACATA  1096

seq1  TGCCTTTAATCTCAGCACTCCGAAACCAGAGCCAGGTAGGTAAATCTCTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCTCAGCACTCCGAAACCAGAGCCAGGTAGGTAAATCTCTG  1146

seq1  AATTC  1147
      |||||
seq2  AATTC  1151


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