BAC Information

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BAC

Clone NameB6Ng01-218I02
Chromosome7 (Build37)
Map Location 51,987,703 - 52,112,565
singlet/doubletdoublet
Overlap geneZfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik
Downstream genePtov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218I02.bB6Ng01-218I02.g
ACCGA034616GA034617
length2921,157
definitionB6Ng01-218I02.b B6Ng01-218I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,112,275 - 52,112,565)(51,987,703 - 51,988,854)
sequence
attccaaagctcatctatgctatgggaaagactgttcgaaaatttggctc
ctcccacggcgcatgcgcagtcctgactcgcttgaggcgctctgagccag
agcggataggggtcactcgcatccatagtcacttgatccctacgctagag
ttacttgtttttgttttgattttcttgtatgtatgtatgtatgtatgtat
gtatgtatgtatgttttagtgagacaggttctcaggatgtagccttgttt
aaattctttcctaggcatggtggcacatgattttatttatta
gaattctctcgtgcttcctctggtttgctctctgagcaaaggctttcccg
cacgtgccgcatgtgtacggcttctccccagtgtgaattctaaggtgaag
ggtaaggcacgagctctggctgaaggttttcccacattcctggcagacgt
acggcttctccccagtgtgaattctctggtgtcggatgagctgggcacca
gagatgaaggctttcccacagtcaccacacttaaagggcttctcccctga
gtggattttctggtgcttagaaaggcatgatcgctgatgaaatgttttcc
cacactcgctacattcaaagtgcttctctgcagtgtgagtcttctgatgc
tgaatgaggtagttactctgcttgaaggctctgtcacattcgttgcattt
aaagggcttctcagtgatgtgaatcaactgatgttttgaaaggtgggcac
gctgtttgaaggccctgttgtatatgtcacacttgaaggatggttccctt
tgggaaggatggtgctcactggcagaggtgtttcgcgtgcatttctcagg
ctcagcgcattcacttggtttcacaccagcacagatgctctgatggcaaa
tgggctgcacactctggtcataggtttccccacatgggtcacactcaccg
gatgtcacctgggcatgaatcttctcatgctgccctaggtatctgctgtg
gttaggggcttttctacacttggtattcttaaagcatttttcagtgtgct
gtgagttctgacccacaactttctcacttgtattttctctaatgtgtatg
ctcaggtggcaatttcagagttgacctgcaaatgaagtgtttctccacac
tgcttacactcatacaagccctcgatggtgtggattttattgtgccgctc
ttagctgttcttttatagattgaagtcttcttgcatttagcacagccaaa
gtgccttttcttcagcatgtctcagccggtgtcctaactaaggggtgaag
gtccgttaaagtcctgggccacaacgggacacctgatggggttcttgagt
cccgatggactcgcttgatgctcattagtatctgttccctcgaacgaagc
tttccgcaactcacttgcattttgagctcggtcactgtgatctcttgtgg
atcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52112275_52112565
seq2: B6Ng01-218I02.b_52_343 (reverse)

seq1  TAAT-ATTAAACTCATGTGCCACCATGCCTAGGAAAGAATTTTAACAAGG  49
      |||| | |||| |||||||||||||||||||||||||||||| |||||||
seq2  TAATAAATAAAATCATGTGCCACCATGCCTAGGAAAGAATTTAAACAAGG  50

seq1  CTACATCCTGAGAACCTGTCTCACTAAAACATACATACATACATACATAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTGAGAACCTGTCTCACTAAAACATACATACATACATACATAC  100

seq1  ATACATACATACATACAAGAAAATCAAAACAAAAACAAGTAACTCTAGCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACAAGAAAATCAAAACAAAAACAAGTAACTCTAGCG  150

seq1  TAGGGATCAAGTGACTATGGATGCGAGTGACCCCTATCCGCTCTGGCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCAAGTGACTATGGATGCGAGTGACCCCTATCCGCTCTGGCTCA  200

seq1  GAGCGCCTCAAGCGAGTCAGGACTGCGCATGCGCCGTGGGAGGAGCCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCTCAAGCGAGTCAGGACTGCGCATGCGCCGTGGGAGGAGCCAAA  250

seq1  TTTTCGAACAGTCTTTCCCATAGCATAGATGAGCTTTGGAAT  291
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAACAGTCTTTCCCATAGCATAGATGAGCTTTGGAAT  292

seq1: chr7_51987703_51988854
seq2: B6Ng01-218I02.g_66_1222

seq1  GAATTCTCTCGTGCTTCCTCTGGTTTGCTCTCTGAGCAAAGGCTTTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGTGCTTCCTCTGGTTTGCTCTCTGAGCAAAGGCTTTCCCG  50

seq1  CACGTGCCGCATGTGTACGGCTTCTCCCCAGTGTGAATTCTAAGGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCCGCATGTGTACGGCTTCTCCCCAGTGTGAATTCTAAGGTGAAG  100

seq1  GGTAAGGCACGAGCTCTGGCTGAAGGTTTTCCCACATTCCTGGCAGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGCACGAGCTCTGGCTGAAGGTTTTCCCACATTCCTGGCAGACGT  150

seq1  ACGGCTTCTCCCCAGTGTGAATTCTCTGGTGTCGGATGAGCTGGGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTCTCCCCAGTGTGAATTCTCTGGTGTCGGATGAGCTGGGCACCA  200

seq1  GAGATGAAGGCTTTCCCACAGTCACCACACTTAAAGGGCTTCTCCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAGGCTTTCCCACAGTCACCACACTTAAAGGGCTTCTCCCCTGA  250

seq1  GTGGATTTTCTGGTGCTTAGAAAGGCATGATCGCTGATGAAATGTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTTCTGGTGCTTAGAAAGGCATGATCGCTGATGAAATGTTTTCC  300

seq1  CACACTCGCTACATTCAAAGTGCTTCTCTGCAGTGTGAGTCTTCTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCGCTACATTCAAAGTGCTTCTCTGCAGTGTGAGTCTTCTGATGC  350

seq1  TGAATGAGGTAGTTACTCTGCTTGAAGGCTCTGTCACATTCGTTGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGGTAGTTACTCTGCTTGAAGGCTCTGTCACATTCGTTGCATTT  400

seq1  AAAGGGCTTCTCAGTGATGTGAATCAACTGATGTTTTGAAAGGTGGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTTCTCAGTGATGTGAATCAACTGATGTTTTGAAAGGTGGGCAC  450

seq1  GCTGTTTGAAGGCCCTGTTGTATATGTCACACTTGAAGGATGGTTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGAAGGCCCTGTTGTATATGTCACACTTGAAGGATGGTTCCCTT  500

seq1  TGGGAAGGATGGTGCTCACTGGCAGAGGTGTTTCGCGTGCATTTCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGATGGTGCTCACTGGCAGAGGTGTTTCGCGTGCATTTCTCAGG  550

seq1  CTCAGCGCATTCACTTGGTTTCACACCAGCACAGATGCTCTGATGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGCATTCACTTGGTTTCACACCAGCACAGATGCTCTGATGGCAAA  600

seq1  TGGGCTGCACACTCTGGTCATAGGTTTCCCCACATGGGTCACACTCACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCACACTCTGGTCATAGGTTTCCCCACATGGGTCACACTCACCG  650

seq1  GATGTCACCTGGGCATGAATCTTCTCATGCTGCCCTAGGTATCTGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCACCTGGGCATGAATCTTCTCATGCTGCCCTAGGTATCTGCTGTG  700

seq1  GTTAGGGGCTTTTCTACACTTGGTATTCTTAAAGCATTTTTCAGTGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGGCTTTTCTACACTTGGTATTCTTAAAGCATTTTTCAGTGTGCT  750

seq1  GTGAGTTCTGACCCACAACTTTCTCACTTGTATTTTCTCTAATGTGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTGACCCACAACTTTCTCACTTGTATTTTCTCTAATGTGTATG  800

seq1  CTCAGGTGGCAA-TTCAGAGTTGACCTGCAAATGAAGTG-TTCTCCACAC  848
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CTCAGGTGGCAATTTCAGAGTTGACCTGCAAATGAAGTGTTTCTCCACAC  850

seq1  TGCTTACACTCATACAAGCCCTCGATGGTGTGGATTTTATTGTGCCGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACTCATACAAGCCCTCGATGGTGTGGATTTTATTGTGCCGCTC  900

seq1  -TAGCTGTTC-TTTATAGATGAAGGTCTCCTTGCATTTAGCACAGCCAAA  946
       ||||||||| |||||||||  | |||| |||||||||||||||||||||
seq2  TTAGCTGTTCTTTTATAGATTGAAGTCTTCTTGCATTTAGCACAGCCAAA  950

seq1  GTGCC-TTTCTTCAGCATGTCTCAGCCGGTGT-CGAACTAA-GTGTGAAG  993
      ||||| |||||||||||||||||||||||||| | |||||| | ||||||
seq2  GTGCCTTTTCTTCAGCATGTCTCAGCCGGTGTCCTAACTAAGGGGTGAAG  1000

seq1  GTCGGTTAAAAGTCCTGGCACAC-ACGGGACA-CTGATGGGGT--CTGAA  1039
      ||| ||| ||||||||||  ||| |||||||| ||||||||||   ||| 
seq2  GTCCGTT-AAAGTCCTGGGCCACAACGGGACACCTGATGGGGTTCTTGAG  1049

seq1  GCCCGAGTGGACTCGC-TGATGCTCAGTAAGATCTGTTCTC-CGACAGAA  1087
       ||||| ||||||||| ||||||||| ||  |||||||| | |||  |||
seq2  TCCCGA-TGGACTCGCTTGATGCTCATTAGTATCTGTTCCCTCGAACGAA  1098

seq1  GGCTTTCCCGCACTCAC-TGCATTTGTGAGGCTTCTGTCCACTGTGGATC  1136
       |||||||   |||||| ||||||| ||||   || || |||||| ||| 
seq2  -GCTTTCCGCAACTCACTTGCATTT-TGAG--CTCGGT-CACTGT-GAT-  1141

seq1  CTCTGGTGGATCTTCA  1152
      |||| |||||||||||
seq2  CTCTTGTGGATCTTCA  1157