BAC Information

Click to search

BAC

Clone NameB6Ng01-219L03
Chromosome7 (Build37)
Map Location 67,610,430 - 67,665,005
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
Downstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219L03.bB6Ng01-219L03.g
ACCGA035458GA035459
length957423
definitionB6Ng01-219L03.b B6Ng01-219L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,610,430 - 67,611,635)(67,664,577 - 67,665,005)
sequence
gaattcaatgactatgtaacatgggcactagaagagttgtagcaaagtga
aattaatagatctcaaaattgacccaaagagcagggtacattactgtgta
cttactgtttttgtttctctccagagatctctaattttatatgctcaatt
tttccaaaaactcactcattcacataccagagaagtctagtttgcatgtg
acaatgatttaactcatgtgtcttgagattttaattgtatctgaatatta
gaggcctctcattcttcctcctcctctttacttaatttttccttttgttc
actccttctttatgtttggaactttgagaaagaatctcattctgtatcca
aggatagtatcaaacatttagtaatcattttgtttatatctcttgaatta
tatggttacaaatgtaagccaatatacaatgattttttttcattttaaat
gtgcatttggctttaatcattaattatatttacaattaatattttagtga
aaaagtccaggcatcatggcacatatatttaagccatatatagagagtgc
atattgtgtttaactacagccaggattacatttttgaaccctgtattaac
aataaaatataaataataaaattaaaattatagtagcaaaagattatgtc
cagtctttctctatttgagtggcaagcagatggttgctgaagtagcagct
tatatctcaaaccacagagaggaagaagagagaatgctttgaaacatcat
gagatttttgaaagatagaaagctatccccagggatatcttttgtccagc
aatgctgcatcttctaatcttccccaaacagccatcaactaggagtcaag
tatttgaaaattcgagacaaatagtgggcatctcattcaaaacactgcac
tgtacaccttattatcacagtctcacaaccatatcataataaaattgtat
actgtaa

agtgggcaaataagatgagtgggtgaatataatgtaacctatacacttca
ggatctgcaggacttatgaaagtggattaaaagggcagaaaggtgataac
aggatatccacactatttttgatttgagtggaataaatttatttgccatc
tgatttctgagtatcatgtaaaacaagcaaattataaacataacaaataa
gaataaaataacaaaatatctctgtataatactcagccaacaagaatatg
ttttcagtgtatgtataatacattatttattaagttgatttataaaaaat
tccacagttgaaaagtgtacttcaactatgccaaagaatataagcctgtt
ttctgccccagtacagggaatgccagggccaagaagtgggaatgagtagg
taggggagcatggtgggggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_67610430_67611635
seq2: B6Ng01-219L03.b_47_1255

seq1  GAATTCAATGACTATGTAACATGGGCACTCAGAAGAGTTGTAGCAAAGTG  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCAATGACTATGTAACATGGGCACT-AGAAGAGTTGTAGCAAAGTG  49

seq1  AAATTAATAGATCTCAAAATTGACCCAAAGAGCAGGGTACATTACTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATAGATCTCAAAATTGACCCAAAGAGCAGGGTACATTACTGTGT  99

seq1  ACTTACTGTTTTTGTTTTTCTTCAGAGAACTCTAATTTTATAGGCTCAGT  150
      ||||||||||||||||| ||| |||||| ||||||||||||| ||||| |
seq2  ACTTACTGTTTTTGTTTCTCTCCAGAGATCTCTAATTTTATATGCTCAAT  149

seq1  TTTTCCAAAAACTCATTCATTCACATACCAGCGAATTCTAGTTTGCATGT  200
      ||||||||||||||| ||||||||||||||| ||| ||||||||||||||
seq2  TTTTCCAAAAACTCACTCATTCACATACCAGAGAAGTCTAGTTTGCATGT  199

seq1  GACAATGATTTAACTCATGTGTCTTGAGATTTTAATTGTATCT-------  243
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  GACAATGATTTAACTCATGTGTCTTGAGATTTTAATTGTATCTGAATATT  249

seq1  ----GCCTCTCATTCTTCCTCCTCCTCTTTACTTAATTTTTCCTTTTGTT  289
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTCTCATTCTTCCTCCTCCTCTTTACTTAATTTTTCCTTTTGTT  299

seq1  CACTCCTTCTTTATTTTTGGAACTTTGAGAAAGAGTTTCATTCTGTAGCC  339
      |||||||||||||| ||||||||||||||||||| | |||||||||| ||
seq2  CACTCCTTCTTTATGTTTGGAACTTTGAGAAAGAATCTCATTCTGTATCC  349

seq1  AAGGATAGTATCAAACATTTAGTAATCATTTTGTTTATATCTCTTGAATG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGGATAGTATCAAACATTTAGTAATCATTTTGTTTATATCTCTTGAATT  399

seq1  ATATGGTTACAAATGTAAGCCAATATACAATGATTTTTTTTTCATTTTAA  439
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATGGTTACAAATGTAAGCCAATATACAATGA-TTTTTTTTCATTTTAA  448

seq1  ATGTGCATTTGGCTTTAATCATTAATTATATTTACAATTAATATTTCAAT  489
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  ATGTGCATTTGGCTTTAATCATTAATTATATTTACAATTAATATTTTAGT  498

seq1  GAAAAAGACCAGGCATCATGGCACATATATTTAAGCCATAGGTAGAGAGT  539
      ||||||| ||||||||||||||||||||||||||||||||  ||||||||
seq2  GAAAAAGTCCAGGCATCATGGCACATATATTTAAGCCATATATAGAGAGT  548

seq1  GCATATTGTGTTTAACTACAGCCAGGATTACATTTTTGAACCCTGTATTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGTGTTTAACTACAGCCAGGATTACATTTTTGAACCCTGTATTA  598

seq1  ACAATAAAATATAAATAATAAAATTAAAATTATAGTAGCAAAAGATTATG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATATAAATAATAAAATTAAAATTATAGTAGCAAAAGATTATG  648

seq1  TCCAGTCTTTCTCTATTTGAGTGGCAAGCAGCTGGTTGCTGAAGTAGCAG  689
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCAGTCTTTCTCTATTTGAGTGGCAAGCAGATGGTTGCTGAAGTAGCAG  698

seq1  CTTATATCTCAAACCACAGAGAGGAAGAAGAGAGAATGCTTTGAAACATC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCTCAAACCACAGAGAGGAAGAAGAGAGAATGCTTTGAAACATC  748

seq1  ATGAGATTTTTGAAAGATAGAAAGCTATCCCCAGGGATATCTTTTGTCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTTTGAAAGATAGAAAGCTATCCCCAGGGATATCTTTTGTCCA  798

seq1  GCAATGCTGCATCTTCTAATCTTCCCCAAACAGCCATCAACTAGGAGTCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTGCATCTTCTAATCTTCCCCAAACAGCCATCAACTAGGAGTCA  848

seq1  AGTATTTGAAAATTCGAGACAAATAGTGGGCATCTCATTCAAAACACTGC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGAAAATTCGAGACAAATAGTGGGCATCTCATTCAAAACACTGC  898

seq1  ACTGTACACCTTATTATCACAGTCTCACAACCATATCATAATAAAATTGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACACCTTATTATCACAGTCTCACAACCATATCATAATAAAATTGT  948

seq1  ATACTGTAAAACTTTAAAAGAGCTCATCGTCTTTCAGA----GAATATTG  985
      |||||||||                     ||||||||    ||||| ||
seq2  ATACTGTAANNNNNNNNNNNNNNNNNNNNNCTTTCAGAGAATGAATAATG  998

seq1  TTTAAAAGTTCAAAGTG-TCTTCTGAGCCTCAAGTCAATATGTTCTATGT  1034
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTT-AAAGTTCAAAGTGTTCTTCTGAGCCTCAAGTCAATATGTTCTATGT  1047

seq1  AACTCCTATAAAATCAAAAGCAAGTTACATTTCTCCAGCACATAATGGCA  1084
       |||||||  ||||||||||||||||||| |||| ||||| |||| ||||
seq2  -ACTCCTAATAAATCAAAAGCAAGTTACA-TTCT-CAGCAAATAACGGCA  1094

seq1  CAGAT-CTCATATTACCTCTACTCTGCAATGGACTCAGGCTG-TCCTG--  1130
      ||||| ||||||||||||||||||||||   ||||||||||| |||||  
seq2  CAGATCCTCATATTACCTCTACTCTGCA--TGACTCAGGCTGTTCCTGGA  1142

seq1  AGAAATGCTTAGGTTGACTTTAAGCTTCAACTTTTTCTTCCTCTAACTTC  1180
      |||||||| |||  ||||||| ||||||||||||||| ||| ||||||||
seq2  AGAAATGC-TAG--TGACTTT-AGCTTCAACTTTTTCCTCC-CTAACTTC  1187

seq1  TGGATGCTGTAGTTTCCTATGTGTGT  1206
      | ||||||| |   | ||||||||||
seq2  T-GATGCTGAA---TTCTATGTGTGT  1209


seq1: chr7_67664577_67665005
seq2: B6Ng01-219L03.g_67_495 (reverse)

seq1  CCTTCCCCCACCATGCTCCCCTACCTACTCATTCCCACTTCTTGGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCACCATGCTCCCCTACCTACTCATTCCCACTTCTTGGCCCTG  50

seq1  GCATTCCCTGTACTGGGGCAGAAAACAGGCTTATATTCTTTGGCATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCTGTACTGGGGCAGAAAACAGGCTTATATTCTTTGGCATAGTT  100

seq1  GAAGTACACTTTTCAACTGTGGAATTTTTTATAAATCAACTTAATAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACACTTTTCAACTGTGGAATTTTTTATAAATCAACTTAATAAATA  150

seq1  ATGTATTATACATACACTGAAAACATATTCTTGTTGGCTGAGTATTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATACATACACTGAAAACATATTCTTGTTGGCTGAGTATTATAC  200

seq1  AGAGATATTTTGTTATTTTATTCTTATTTGTTATGTTTATAATTTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATTTTGTTATTTTATTCTTATTTGTTATGTTTATAATTTGCTTG  250

seq1  TTTTACATGATACTCAGAAATCAGATGGCAAATAAATTTATTCCACTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGATACTCAGAAATCAGATGGCAAATAAATTTATTCCACTCAA  300

seq1  ATCAAAAATAGTGTGGATATCCTGTTATCACCTTTCTGCCCTTTTAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAATAGTGTGGATATCCTGTTATCACCTTTCTGCCCTTTTAATCC  350

seq1  ACTTTCATAAGTCCTGCAGATCCTGAAGTGTATAGGTTACATTATATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATAAGTCCTGCAGATCCTGAAGTGTATAGGTTACATTATATTCA  400

seq1  CCCACTCATCTTATTTGCCCACTGAATTC  429
      |||||||||||||||||||||||||||||
seq2  CCCACTCATCTTATTTGCCCACTGAATTC  429


| Home | SequenceCutter | Blast | Download |