BAC Information

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BAC

Clone NameB6Ng01-220N20
Chromosome7 (Build37)
Map Location 29,548,221 - 29,697,824
singlet/doubletdoublet
Overlap geneNfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4
Upstream geneLOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918
Downstream geneEif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220N20.bB6Ng01-220N20.g
ACCGA036315GA036316
length1,1111,023
definitionB6Ng01-220N20.b B6Ng01-220N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,548,221 - 29,549,330)(29,696,800 - 29,697,824)
sequence
gaattcactctattcctcggcaggtcctgaccttgagctcctcctgcctc
aatcttctttgtagctggaatcacacgcccagctttgaacaacactgcta
accaacattccctctaagtcacacgttgtcaaaatgaattccaccggcac
acagttcccgagagcactcgcccagcactcagaaggccctgggtctgatg
gccagcgctgcaagagaaaaactagagaccgcaaatcagacaaaacatgt
tctctgcccgcagtaaaatgaaatttaaagctggtaacagagagatctgg
aaactcctccaagcgtgaaaaatgaacatacttcttcataacctactggc
caaaggagaaaccaagagaaattagaaaatatactcatttatgcaaaaat
aaaaacacaatatatcagaagttctccagagggaatatttacagcattcc
aagcacattagaaaagaagagagatgagctgggcagtggcttgcttggta
gactgctagcttagcgtgcataagaacctgggatcaatcccaactctgca
taaaccaggcacgcaccaccttgcccggaattccaggcaggaagaccaag
agtagggtagggtaggagcaatggcttagcagttaagaacacttgttgct
gccgggcagtggtggcgcacgcctttaatcccagcacttgggaggcagag
gcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccagggccatacagaaaaaccctgtctcaaaaaaacaaaaaac
acttgttgctcttgcagaagaccccggtttgattttcagcacctacattg
tggctcatagccatccctaactccagtttccaggggatccaacatttata
cacataaagtaaaattatttgggaagcaggggcagacatatctctgagtt
tcaacgtcagtctgctctacatagagaattccaggacagccaggctacac
agagaaacccaatctcaaaaaccaaaaataaataaataaaaccaaagaaa
aatttcatatgtgtagaacagaatctcttataggccaacacctgtcataa
aaaaagcaaac
gaattctgttgtattggaaaactagtgaggggagttagagagatcaggcc
tgttaagcaagctgtagctgttgttgcagcagtaggatcaggtgttctag
ggagggaaacatggatgttcttcaacacacacacacacacacacacacac
actcgggagccttatggtttctcaagcccggaccacaccctcaaaggttc
agagcacagggcttagctaaggcctgtggctggctgtcagttctatgagg
agtgtgcctgcatttctctagagtaaagattgtagtccagctttgggcag
gaattgtgttatgcagctggcctttctccctgtatggcagcagcacaccg
ggatgagaattcctgatactctccagccctgcccctcaaggctcccctgt
ctcaggccagccctttgccttttaccattgcttgggtcctattcctgatg
gacggattctgtgtttattccaatgcctccccaggatgatccagtcacca
acctaaacaatgcatttgaagtggctgagaaatacctcgatatccccaag
atgttggatgctgagggtgagtacctcccctgtgttcagtcaacaccatg
tttccttgggccttgtctctctggacctagccttcgctgggtccacaact
catcaaagcctcaagaaaaccttggggagctggctggctgagccagggtg
aaaggctgctgagcttggtatggccagatgcagtcagaatagcagaaaag
ggagggtagggtggttcagtgcttaagggtcaattttctctggtaccaca
gaaagggcaaggaggctggcttcctgtgaacagccctggcctttctcctg
accagccaaaggcctgggctctggagcctgccgaagtgatggttgttttt
ttccttttcccggcttttgctccattccagccagcaccaccccagcaagg
acccatgtctctggcctctggtggcctttgagttcagtgtcctgcagccc
ttgaggccattctcagagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29548221_29549330
seq2: B6Ng01-220N20.b_47_1157

seq1  GAATTCACTCTATTCCTCGGCAGGTCCTGACCTTGAGCTCCTCCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATTCCTCGGCAGGTCCTGACCTTGAGCTCCTCCTGCCTC  50

seq1  AATCTTCTTTGTAGCTGGAATCACACGCCCAGCTTTGAACAACACTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTTGTAGCTGGAATCACACGCCCAGCTTTGAACAACACTGCTA  100

seq1  ACCAACATTCCCTCTAAGTCACACGTTGTCAAAATGAATTCCACCGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATTCCCTCTAAGTCACACGTTGTCAAAATGAATTCCACCGGCAC  150

seq1  ACAGTTCCCGAGAGCACTCGCCCAGCACTCAGAAGGCCCTGGGTCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCCGAGAGCACTCGCCCAGCACTCAGAAGGCCCTGGGTCTGATG  200

seq1  GCCAGCGCTGCAAGAGAAAAACTAGAGACCGCAAATCAGACAAAACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGCTGCAAGAGAAAAACTAGAGACCGCAAATCAGACAAAACATGT  250

seq1  TCTCTGCCCGCAGTAAAATGAAATTTAAAGCTGGTAACAGAGAGATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCCGCAGTAAAATGAAATTTAAAGCTGGTAACAGAGAGATCTGG  300

seq1  AAACTCCTCCAAGCGTGAAAAATGAACATACTTCTTCATAACCTACTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTCCAAGCGTGAAAAATGAACATACTTCTTCATAACCTACTGGC  350

seq1  CAAAGGAGAAACCAAGAGAAATTAGAAAATATACTCATTTATGCAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGAAACCAAGAGAAATTAGAAAATATACTCATTTATGCAAAAAT  400

seq1  AAAAACACAATATATCAGAAGTTCTCCAGAGGGAATATTTACAGCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAATATATCAGAAGTTCTCCAGAGGGAATATTTACAGCATTCC  450

seq1  AAGCACATTAGAAAAGAAGAGAGATGAGCTGGGCAGTGGCTTGCTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTAGAAAAGAAGAGAGATGAGCTGGGCAGTGGCTTGCTTGGTA  500

seq1  GACTGCTAGCTTAGCGTGCATAAGAACCTGGGATCAATCCCAACTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTAGCTTAGCGTGCATAAGAACCTGGGATCAATCCCAACTCTGCA  550

seq1  TAAACCAGGCACGCACCACCTTGCCCGGAATTCCAGGCAGGAAGACCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGGCACGCACCACCTTGCCCGGAATTCCAGGCAGGAAGACCAAG  600

seq1  AGTAGGGTAGGGTAGGAGCAATGGCTTAGCAGTTAAGAACACTTGTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGTAGGGTAGGAGCAATGGCTTAGCAGTTAAGAACACTTGTTGCT  650

seq1  GCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG  700

seq1  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  750

seq1  AGGACAGCCAGGGCCATACAGAAAAACCCTGTCTCAAAAAAACAAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCCATACAGAAAAACCCTGTCTCAAAAAAACAAAAAAC  800

seq1  ACTTGTTGCTCTTGCAGAAGACCCCGGTTTGATTTTCAGCACCTACATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGCTCTTGCAGAAGACCCCGGTTTGATTTTCAGCACCTACATTG  850

seq1  TGGCTCATAGCCATCCCTAACTCCAG-TTCCAGGGGATCCAACATTTATA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGCTCATAGCCATCCCTAACTCCAGTTTCCAGGGGATCCAACATTTATA  900

seq1  CACATAAAGTAAAATTATTTGGGAAGCAGGGGCAGACATATCTCTGAG-T  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACATAAAGTAAAATTATTTGGGAAGCAGGGGCAGACATATCTCTGAGTT  950

seq1  TCAACGTCAGTCTGCTCTACATAGAGAATTCCAGGACAGCCAAGGCTACA  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAACGTCAGTCTGCTCTACATAGAGAATTCCAGGACAGCC-AGGCTACA  999

seq1  CAGAGAAACCCAATCTCAAAAAACCAAAAATAAATAAAATAAACCAAAGA  1048
      ||||||||||||||||| ||||||||||||||||||||  ||||||||||
seq2  CAGAGAAACCCAATCTC-AAAAACCAAAAATAAATAAATAAAACCAAAGA  1048

seq1  AAAATTTCATAATGTGTAG-ACAGAATCTCTTATAGG-CAACACCTGTCA  1096
      |||||||||| |||||||| ||||||||||||||||| ||||||||||||
seq2  AAAATTTCAT-ATGTGTAGAACAGAATCTCTTATAGGCCAACACCTGTCA  1097

seq1  ATAAAAAAGCAAAC  1110
        ||||||||||||
seq2  TAAAAAAAGCAAAC  1111

seq1: chr7_29696800_29697824
seq2: B6Ng01-220N20.g_68_1090 (reverse)

seq1  CCTTTCTCTGAGAATGGCCTCAAGGGGCTGCAGGACACTGAACTCCAAAG  50
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CCTTTCTCTGAGAATGGCCTCAA-GGGCTGCAGGACACTGAACT-CAAAG  48

seq1  GCCACCAGAGGCCAGAGACATGGGTCC-TGCTGGGGGTGGTGCTGGCTGG  99
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GCCACCAGAGGCCAGAGACATGGGTCCTTGCT-GGGGTGGTGCTGGCTGG  97

seq1  GAAATGGAGC-AAAGCC-GGAAAAGG-AAAAAACAACATTCCACTTCGGC  146
        |||||||| |||||| |||||||| ||||||||||  | |||||||||
seq2  --AATGGAGCAAAAGCCGGGAAAAGGAAAAAAACAACCAT-CACTTCGGC  144

seq1  AGGCTCCAGAGCCCAGGCCTTTGGCTGGTCAGGAGAAAGGCCAGGGCTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAGAGCCCAGGCCTTTGGCTGGTCAGGAGAAAGGCCAGGGCTGT  194

seq1  TCACAGGAAGCCAGCCTCCTTGCCCCTTCTGTGGTACCAGAGAAAATTGA  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACAGGAAGCCAGCCTCCTTGCCCTTTCTGTGGTACCAGAGAAAATTGA  244

seq1  CCCTTTAAGCACTG-ACCACCCTACCCTCCCTTTTCTGCTATTCTGACTG  295
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCC-TTAAGCACTGAACCACCCTACCCTCCCTTTTCTGCTATTCTGACTG  293

seq1  CATCTGGCCATACCAAGCTCAGCAGCCTTTCACCCTGGCTCAGCCAGCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCCATACCAAGCTCAGCAGCCTTTCACCCTGGCTCAGCCAGCCA  343

seq1  GCTCCCCAAGGTTTTCTTGAGGCTTTGATGAGTTGTGGACCCAGCGAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAAGGTTTTCTTGAGGCTTTGATGAGTTGTGGACCCAGCGAAGG  393

seq1  CTAGGTCCAGAGAGACAAGGCCCAAGGAAACATGGTGTTGACTGAACACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCCAGAGAGACAAGGCCCAAGGAAACATGGTGTTGACTGAACACA  443

seq1  GGGGAGGTACTCACCCTCAGCATCCAACATCTTGGGGATATCGAGGTATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTACTCACCCTCAGCATCCAACATCTTGGGGATATCGAGGTATT  493

seq1  TCTCAGCCACTTCAAATGCATTGTTTAGGTTGGTGACTGGATCATCCTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCACTTCAAATGCATTGTTTAGGTTGGTGACTGGATCATCCTGG  543

seq1  GGAGGCATTGGAATAAACACAGAATCCGTCCATCAGGAATAGGACCCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATTGGAATAAACACAGAATCCGTCCATCAGGAATAGGACCCAAG  593

seq1  CAATGGTAAAAGGCAAAGGGCTGGCCTGAGACAGGGGAGCCTTGAGGGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAAAAGGCAAAGGGCTGGCCTGAGACAGGGGAGCCTTGAGGGGC  643

seq1  AGGGCTGGAGAGTATCAGGAATTCTCATCCCGGTGTGCTGCTGCCATACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAGAGTATCAGGAATTCTCATCCCGGTGTGCTGCTGCCATACA  693

seq1  GGGAGAAAGGCCAGCTGCATAACACAATTCCTGCCCAAAGCTGGACTACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGGCCAGCTGCATAACACAATTCCTGCCCAAAGCTGGACTACA  743

seq1  ATCTTTACTCTAGAGAAATGCAGGCACACTCCTCATAGAACTGACAGCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTCTAGAGAAATGCAGGCACACTCCTCATAGAACTGACAGCCA  793

seq1  GCCACAGGCCTTAGCTAAGCCCTGTGCTCTGAACCTTTGAGGGTGTGGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCCTTAGCTAAGCCCTGTGCTCTGAACCTTTGAGGGTGTGGTC  843

seq1  CGGGCTTGAGAAACCATAAGGCTCCCGAGTGTGTGTGTGTGTGTGTGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTGAGAAACCATAAGGCTCCCGAGTGTGTGTGTGTGTGTGTGTGT  893

seq1  GTGTGTTGAAGAACATCCATGTTTCCCTCCCTAGAACACCTGATCCTACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGAAGAACATCCATGTTTCCCTCCCTAGAACACCTGATCCTACT  943

seq1  GCTGCAACAACAGCTACAGCTTGCTTAACAGGCCTGATCTCTCTAACTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAACAACAGCTACAGCTTGCTTAACAGGCCTGATCTCTCTAACTCC  993

seq1  CCTCACTAGTTTTCCAATACAACAGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  CCTCACTAGTTTTCCAATACAACAGAATTC  1023