BAC Information

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BAC

Clone NameB6Ng01-222E07
Chromosome7 (Build37)
Map Location 8,798,658 - 8,934,553
singlet/doubletdoublet
Overlap geneLOC100041998, LOC100042009, LOC100042754
Upstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989
Downstream geneV2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222E07.bB6Ng01-222E07.g
ACCGA037332GA037333
length1,1341,010
definitionB6Ng01-222E07.b B6Ng01-222E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,933,415 - 8,934,553)(8,798,658 - 8,799,416)
sequence
gaattcactgatataaatgttaactcttaattgtttttatatctaaaaca
atttcagtaaaataattaaaaaaaatattttcatgtgtagtgtatgttgg
aatccatgacttcaaatgacatcttctgagtaggttgcttggttctacta
catgcctcatgggaataaactcagattgtaggccttggccccaagtgatt
taactattgtataatctcacaggcataatatttcttctgagaactttaat
tcattatattgaatgaagaaaaaataattgaaaagataactataaacttt
atgcattttgtcaactctatataattattatagtaattgatgtggaatcc
aatatactaaacatgagtcttatcatatatttaacatcattggtcaacac
ttattccatacttcctggactcatatcacacctggcttttctcatggccc
tctgaatattacatacttaatatcttgacataaatttgcaaatacttttg
tattctacattaatcttacagagaacatgtaatttgtgtctatcagcctc
atgatccatttcagtagattattatattataatcgcttcttcatggactc
ctatatgtatgtggtgtacataatcatatgtaggacagacatactcaaga
aatatctctaaattaattctttttaaaattgtgacaaaaatgtaatgtac
atgtagttttatagtagattacttattgggaaagtactctaggatattcc
ttcaaattgagttttattttttaaagtatttctttgtgaaaatataatat
gctatgaatttgcaatgcgtgagtatgtgggcaaagacacaaggtatatg
tgtttggtttttaatttatttgttggtttttggtaggattttgttattga
tttttatgtctacaactagtaaatagaaaagtgacaatattttatattaa
aagttgccttttagttgacgtcatcattctagcatggtaaaagaggtgat
acacacacaccatcacacacacaccctcaccacacacatattttttggta
agatttatacgagcagataaaccttacttgcctcattaggaaatttcatt
ttacgcaaggggctgccaaatgaaacagacaggc
gaattcactctgtagatcatgctggctgtaaactatgaaatctgcctgcc
tctccttcccaaatgcttcgattaaagacatgaaccatcactgcccagct
gcctttagcttaatacaagtatgacatgtaaagccttactaaataaaact
gcttttatattacagttgtttattatattattagggttgaagattgaaat
atactcccatttttatggtgattttgtatttgtggattttttcaatttta
taaattgtagattgcatttgttcacatttcaaattttgtcccctttcact
atttcccttctgcaaatccactatgccatccccccttaccatgcttctat
gagggagctcccctacccacatacccactcttgcttcagcacccaagcat
tcatctacactggggaatcaagccttcacagggccaagggactcccctca
cattgatgacagatagggagctttaactacttcagtccttcccctaacac
cttcattggagtccctgtgtttagtccaatggttgactgtgaacatccac
atctgtattggtcaggatctggcagagcctcctagaagacagctggatca
gtctcctttccacaagcacttcttgccatccacaatagtgtctgggtttg
gtatctgcatttgtgatggatcttcaggtggggcaggctgtgtgtggcct
ttaattcagtctctgatcttctctttgtcccattatttccaatagatagg
aacaattctgagttaaaattttgtagatgtgtgggtggtcctatccctca
actgggagccatgcctatcctctggctattgtctcgacagattctccttc
ccgattctgggatatttcagctaatatcatcgctgtacgtcctggatgct
cttgatttcctggcatctgggacttttctggttgctacaaacagttcccc
gtccctagttgctacaccacctctgttcatttcctgacctctgtacagat
cttccacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8933415_8934553
seq2: B6Ng01-222E07.b_42_1175 (reverse)

seq1  GCCTG-CTGTTTCATTT-GCAGCCCCTGCCCTGAAAATGAAATTT-CTAA  47
      ||||| ||||||||||| |||||||||  | | |||||||||||| ||||
seq2  GCCTGTCTGTTTCATTTGGCAGCCCCTTGCGT-AAAATGAAATTTCCTAA  49

seq1  TGAGACAAGTAAGTTTTATCTGCTCTGATAAATCCTACAAATATATGTGT  97
      |||| |||||||| |||||||||||  ||||||| ||| || | || |||
seq2  TGAGGCAAGTAAGGTTTATCTGCTCGTATAAATCTTACCAAAAAATATGT  99

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCA-C  146
      |||||         ||| | |||||||||||   |||||||||||||| |
seq2  GTGTG---------GTGAGGGTGTGTGTGTGATGGTGTGTGTGTATCACC  140

seq1  TCTTTTACCATGCTAGAATGATGACATCAACTAAAAGGCAACTTTTAATA  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTTTACCATGCTAGAATGATGACGTCAACTAAAAGGCAACTTTTAATA  190

seq1  TAAAATA-TGTCACTTTTCTAATTTACTAGTTGTAGACATAAAAATCAAT  245
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAATATTGTCACTTTTCT-ATTTACTAGTTGTAGACATAAAAATCAAT  239

seq1  AACAAAATCCTACCAAAAACCAACAAATAAATTAAAAACCAAACACATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCCTACCAAAAACCAACAAATAAATTAAAAACCAAACACATAT  289

seq1  ACCTTGTGTCTTTGCCCACATACTCACGCATTGCAAATTCATAGCATATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGTCTTTGCCCACATACTCACGCATTGCAAATTCATAGCATATT  339

seq1  ATATTTTCACAAAGAAATACTTTAAAAAATAAAACTCAATTTGAAGGAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCACAAAGAAATACTTTAAAAAATAAAACTCAATTTGAAGGAAT  389

seq1  ATCCTAGAGTACTTTCCCAATAAGTAATCTACTATAAAACTACATGTACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGAGTACTTTCCCAATAAGTAATCTACTATAAAACTACATGTACA  439

seq1  TTACATTTTTGTCACAATTTTAAAAAGAATTAATTTAGAGATATTTCTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTTGTCACAATTTTAAAAAGAATTAATTTAGAGATATTTCTTG  489

seq1  AGTATGTCTGTCCTACATATGATTATGTACACCACATACATATAGGAGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCTGTCCTACATATGATTATGTACACCACATACATATAGGAGTC  539

seq1  CATGAAGAAGCGATTATAATATAATAATCTACTGAAATGGATCATGAGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAGCGATTATAATATAATAATCTACTGAAATGGATCATGAGGC  589

seq1  TGATAGACACAAATTACATGTTCTCTGTAAGATTAATGTAGAATACAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACACAAATTACATGTTCTCTGTAAGATTAATGTAGAATACAAAA  639

seq1  GAATTTGCAAATTTATGTCAAGATATTAAGTATGTAATATTCAGAGGGCC  695
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAAATTTATGTCAAGATATTAAGTATGTAATATTCAGAGGGCC  689

seq1  ATGAGAAAAGCCAGGTGTGATATGAGTCCAGGAAGTATGGAATAAGTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAGCCAGGTGTGATATGAGTCCAGGAAGTATGGAATAAGTGTT  739

seq1  GACCAATGATGTTAAATATATGATAAGACTCATGTTTAGTATATTGGATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACCAATGATGTTAAATATATGATAAGACTCATGTTTAGTATATTGGATT  789

seq1  CCACATCAATTACTATAATAATTATATAGAGTTGACAAAATGCATAAAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAATTACTATAATAATTATATAGAGTTGACAAAATGCATAAAGT  839

seq1  TTATAGTTATCTTTTCAATTATTTTTTCTTCATTCAATATAATGAATTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTATCTTTTCAATTATTTTTTCTTCATTCAATATAATGAATTAA  889

seq1  AGTTCTCAGAAGAAATATTATGCCTGTGAGATTATACAATAGTTAAATCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGAAGAAATATTATGCCTGTGAGATTATACAATAGTTAAATCA  939

seq1  CTTGGGGCCAAGGCCTACAATCTGAGTTTATTCCCATGAGGCATGTAGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCCAAGGCCTACAATCTGAGTTTATTCCCATGAGGCATGTAGTA  989

seq1  GAACCAAGCAACCTACTCAGAAGATGTCATTTGAAGTCATGGATTCCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGCAACCTACTCAGAAGATGTCATTTGAAGTCATGGATTCCAAC  1039

seq1  ATACACTACACATGAAAATA-TTTTTTTAATTATTTTACTGAAATTGTTT  1094
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACACTACACATGAAAATATTTTTTTTAATTATTTTACTGAAATTGTTT  1089

seq1  TAGATATAAAAACAATTAAGAGTTAACATTTATATCAGTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAAAAACAATTAAGAGTTAACATTTATATCAGTGAATTC  1134

seq1: chr7_8798658_8799416
seq2: B6Ng01-222E07.g_64_822

seq1  GAATTCACTCTGTAGATCATGCTGGCTGTAAACTATGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCATGCTGGCTGTAAACTATGAAATCTGCCTGCC  50

seq1  TCTCCTTCCCAAATGCTTCGATTAAAGACATGAACCATCACTGCCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCCAAATGCTTCGATTAAAGACATGAACCATCACTGCCCAGCT  100

seq1  GCCTTTAGCTTAATACAAGTATGACATGTAAAGCCTTACTAAATAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGCTTAATACAAGTATGACATGTAAAGCCTTACTAAATAAAACT  150

seq1  GCTTTTATATTACAGTTGTTTATTATATTATTAGGGTTGAAGATTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATATTACAGTTGTTTATTATATTATTAGGGTTGAAGATTGAAAT  200

seq1  ATACTCCCATTTTTATGGTGATTTTGTATTTGTGGATTTTTTCAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCATTTTTATGGTGATTTTGTATTTGTGGATTTTTTCAATTTTA  250

seq1  TAAATTGTAGATTGCATTTGTTCACATTTCAAATTTTGTCCCCTTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTAGATTGCATTTGTTCACATTTCAAATTTTGTCCCCTTTCACT  300

seq1  ATTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCATGCTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCATGCTTCTAT  350

seq1  GAGGGAGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCAT  400

seq1  TCATCTACACTGGGGAATCAAGCCTTCACAGGGCCAAGGGACTCCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACACTGGGGAATCAAGCCTTCACAGGGCCAAGGGACTCCCCTCA  450

seq1  CATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCTTCCCCTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCTTCCCCTAACAC  500

seq1  CTTCATTGGAGTCCCTGTGTTCAGTCCAATGGTTGACTGTGAACATCCAC  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCATTGGAGTCCCTGTGTTTAGTCCAATGGTTGACTGTGAACATCCAC  550

seq1  ATCTGTATTGGTCAGGATCTGGCAGAGCCTCCTAGAAGACAGCTGGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTGGTCAGGATCTGGCAGAGCCTCCTAGAAGACAGCTGGATCA  600

seq1  GTCTCCTTTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGGGTTTG  650

seq1  GTATCTGCATTTGTGATGGATCTTCAGGTGGGGCAGGCTGTGTGTGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGCATTTGTGATGGATCTTCAGGTGGGGCAGGCTGTGTGTGGCCT  700

seq1  TTAATTCAGTCTCTGATCTTCTCTTTGTCCCATTATTTCCAATAGATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGTCTCTGATCTTCTCTTTGTCCCATTATTTCCAATAGATAGG  750

seq1  AACAATTCT  759
      |||||||||
seq2  AACAATTCT  759