BAC Information

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BAC

Clone NameB6Ng01-223B02
Chromosome7 (Build37)
Map Location 11,832,519 - 11,982,822
singlet/doubletdoublet
Overlap geneLOC546931, LOC675762, Zscan4e, LOC665857, LOC665861
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893
Downstream geneZscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223B02.bB6Ng01-223B02.g
ACCGA037913GA037914
length1,0761,014
definitionB6Ng01-223B02.b B6Ng01-223B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,981,752 - 11,982,822)(11,832,519 - 11,833,543)
sequence
gaattccaagattggcatttatcttctatgacctctgatcctgtgttctc
acatagtagtcaatggaaacttgttacaatttcctggtttctagagagat
tagatcctaaatgcttcagtgaaccctgtagaatccttgatagtaggatc
agatagggcaagaagaatccagaaggtgtctgtagcacaatatagtaaag
atcgaggctgaagggaacttatgtcttttggtagagaggaatgtgcattg
cctattgggaaaacatggacattatatgaggactgtatactagggagaga
ttaaaatttgtggcaaaatgtggtggtctttgttgttctctcttgttttc
tctatctttccatctctctctcatgtttggtttgttcatttgttttttgt
tttgtttgtttttttacaagtgtctatatggtatcctagtctgctcacaa
tctcactgacttgttcagaatgatcttgcactacaatcctataactttta
actcctcagtgctgacatcccagagtgacctcactacttcacacatcctt
tttgtttttctgtctctgttttcttttacttcatctagagacaatttttt
tcccttgtatgcctagacataatagccctacagtgtggatcaggttgaca
catccttgccattaattccatagtggtggatttaaacgtggttgcctttg
tgaattgatttgtccaatcatgctaattgataggttcaattgtgacccct
aaattcacatgttgatgttttatcttcaaacactgagattgtgctaaact
tcagtccaaaacatagaaccttaaatttccctttaccccaaataggatgg
aaaatcagtgatttacaacttctaaatttttttacattcacaaaaccata
aattttgaatgcttaaaccttaaagctgcccttcccttttatggaaaaaa
aatgccacatgacaaagaaagcactaccaatccttcaaatgaattagcca
tttgttacaccaatgattgactcaccatgtaaaaatgtatcatttgtttt
tttttttgctatttgatgatgttcag
gaattccataccaagatccatatcagaaacttctgtctccaagcctctag
ataagggtcactggtgggccttccaattctggattgtagttcatttcaaa
tatagtcaagttgacaaccaggaatagccactacaggtggggacacttta
aagatcagcacaccactaccccacagactgcaaagaattctcactgccaa
tggcttggccaagctaacccaacccccaaaaagcaaaacaaaaaaattca
aaataatgtaaaattttaaaagttttttttttttttcatataagctatta
aagatttctctagcactgactgatacaaagcacaatgagatggcacttta
gagacctcagcttcaggaaagggagatgagatgattttcatgtggctaaa
tcagtggcacaaacacaattttccttttccctgtctcccttgggggcagg
tgacctctaagaggtcagcacaacactaaggggcggtatgatccatcttt
gagcagttaggaaagggatagagctgcgacaaatctgggctcagagctgg
ggctgaatggtagcacgtttgcctaacattcatgaggccgtgggaggtgg
ggcttctcagatgtctcactgtcttatttggtcacatctgatggaaaaag
tacaaaataaaaataagggtaaagttgttcaaagaaaccaaagctgaaaa
ccttcacagccgggaacagttttttgtttttggctaacttcctagaatct
ccctgttgtctggctaagacttggtgcagagcagtgaggtctcccacaaa
ggagcctgcctgagctctgctggctctcaggaaggcaggcccaatcctgg
gtttctcctccatggcgagacagtatccattaggctaaatgtgctgctcc
aagcggcagaagtgctcggaatgtaaaaatggttgctagacagaagtaat
cacatgtgcatatcacactgcattgagacactgtgtgtgctcacatccct
aaatattgtctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11981752_11982822
seq2: B6Ng01-223B02.b_45_1120 (reverse)

seq1  CTGAACATCATC-AATAGCAAAAAAAAAAACAAATGATACATTTTTACAT  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGAACATCATCAAATAGCAAAAAAAAAAACAAATGATACATTTTTACAT  50

seq1  GGTGAGTCAATCATTGTTGTAACAAATGGCTAATTCATTTGAAGAATTTG  99
      |||||||||||||||| ||||||||||||||||||||||||||| ||| |
seq2  GGTGAGTCAATCATTGGTGTAACAAATGGCTAATTCATTTGAAGGATTGG  100

seq1  TAGTGCTTTCTTTGTCATGTGGCATTTTTTTTCCAT-AAAGGGAAGGGCA  148
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGTGCTTTCTTTGTCATGTGGCATTTTTTTTCCATAAAAGGGAAGGGCA  150

seq1  GCTTT-AGGTTTAAGCATTCAAAATTTATGGTTTTGTGAATGTAAAAAAA  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGGTTTAAGCATTCAAAATTTATGGTTTTGTGAATGTAAAAAAA  200

seq1  TTTAGAAGTTGTAAATCACTGATTTTCCATCCTATTTGGGGT-AAGGGAA  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTAGAAGTTGTAAATCACTGATTTTCCATCCTATTTGGGGTAAAGGGAA  250

seq1  A-TTAAGGTTCTATGTTTTGGACTGAAGTTTAGCACAATCTCAGTGTTTG  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTTCTATGTTTTGGACTGAAGTTTAGCACAATCTCAGTGTTTG  300

seq1  AAGATAAAACATCAACATGTGAATTTAGGGGTCACAATTGAACCTATCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAACATCAACATGTGAATTTAGGGGTCACAATTGAACCTATCAA  350

seq1  TTAGCATGATTGGACAAATCAATTCACAAAGGCAACCACGTTTAAATCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGATTGGACAAATCAATTCACAAAGGCAACCACGTTTAAATCCA  400

seq1  CCACTATGGAATTAATGGCAAGGATGTGTCAACCTGATCCACACTGTAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGGAATTAATGGCAAGGATGTGTCAACCTGATCCACACTGTAGG  450

seq1  GCTATTATGTCTAGGCATACAAGGGAAAAAAATTGTCTCTAGATGAAGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATGTCTAGGCATACAAGGGAAAAAAATTGTCTCTAGATGAAGTA  500

seq1  AAAGAAAACAGAGACAGAAAAACAAAAAGGATGTGTGAAGTAGTGAGGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACAGAGACAGAAAAACAAAAAGGATGTGTGAAGTAGTGAGGTC  550

seq1  ACTCTGGGATGTCAGCACTGAGGAGTTAAAAGTTATAGGATTGTAGTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGATGTCAGCACTGAGGAGTTAAAAGTTATAGGATTGTAGTGCA  600

seq1  AGATCATTCTGAACAAGTCAGTGAGATTGTGAGCAGACTAGGATACCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTCTGAACAAGTCAGTGAGATTGTGAGCAGACTAGGATACCATA  650

seq1  TAGACACTTGTAAAAAAACAAACAAAACAAAAAACAAATGAACAAACCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTTGTAAAAAAACAAACAAAACAAAAAACAAATGAACAAACCAA  700

seq1  ACATGAGAGAGAGATGGAAAGATAGAGAAAACAAGAGAGAACAACAAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAGAGAGATGGAAAGATAGAGAAAACAAGAGAGAACAACAAAGA  750

seq1  CCACCACATTTTGCCACAAATTTTAATCTCTCCCTAGTATACAGTCCTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATTTTGCCACAAATTTTAATCTCTCCCTAGTATACAGTCCTCA  800

seq1  TATAATGTCCATGTTTTCCCAATAGGCAATGCACATTCCTCTCTACCAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTCCATGTTTTCCCAATAGGCAATGCACATTCCTCTCTACCAAA  850

seq1  AGACATAAGTTCCCTTCAGCCTCGATCTTTACTATATTGTGCTACAGACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGTTCCCTTCAGCCTCGATCTTTACTATATTGTGCTACAGACA  900

seq1  CCTTCTGGATTCTTCTTGCCCTATCTGATCCTACTATCAAGGATTCTACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGATTCTTCTTGCCCTATCTGATCCTACTATCAAGGATTCTACA  950

seq1  GGGTTCACTGAAGCATTTAGGATCTAATCTCTCTAGAAACCAGGAAATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACTGAAGCATTTAGGATCTAATCTCTCTAGAAACCAGGAAATTG  1000

seq1  TAACAAGTTTCCATTGACTACTATGTGAGAACACAGGATCAGAGGTCATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTTTCCATTGACTACTATGTGAGAACACAGGATCAGAGGTCATA  1050

seq1  GAAGATAAATGCCAATCTTGGAATTC  1071
      ||||||||||||||||||||||||||
seq2  GAAGATAAATGCCAATCTTGGAATTC  1076

seq1: chr7_11832519_11833543
seq2: B6Ng01-223B02.g_66_1079

seq1  GAATTCCATACCAAGATCCATATCAGAAACTTCTGTCTCCAAGCCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCAAGATCCATATCAGAAACTTCTGTCTCCAAGCCTCTAG  50

seq1  ATAAGGGTCACTGGTGGGCCTTCCAATTCTGGATTGTAGTTCATTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTCACTGGTGGGCCTTCCAATTCTGGATTGTAGTTCATTTCAAA  100

seq1  TATAGTCAAGTTGACAACCAGGAATAGCCACTACAGGTGGGGACACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCAAGTTGACAACCAGGAATAGCCACTACAGGTGGGGACACTTTA  150

seq1  AAGATCAGCACACCACTACCCCACAGACTGCAAAGAATTCTCACTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGCACACCACTACCCCACAGACTGCAAAGAATTCTCACTGCCAA  200

seq1  TGGCTTGGCCAAGCTAACCCAACCCCCAAAAAGCAAAACAAAAAAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGCCAAGCTAACCCAACCCCCAAAAAGCAAAACAAAAAAATTCA  250

seq1  AAATAATGTAAAATTTTAAAAGTTTTTTTTTTTTTTCATATAAGCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAAAATTTTAAAAGTTTTTTTTTTTTTTCATATAAGCTATTA  300

seq1  AAGATTTCTCTAGCACTGACTGATACAAAGCACAATGAGATGGCACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTCTAGCACTGACTGATACAAAGCACAATGAGATGGCACTTTA  350

seq1  GAGACCTCAGCTTCAGGAAAGGGAGATGAGATGATTTTCATGTGGCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCAGCTTCAGGAAAGGGAGATGAGATGATTTTCATGTGGCTAAA  400

seq1  TCAGTGGCACAAACACAATTTTCCTTTTCCCTGTCTCCCTTGGGGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCACAAACACAATTTTCCTTTTCCCTGTCTCCCTTGGGGGCAGG  450

seq1  TGACCTCTAAGAGGTCAGCACAACACTAAGGGGCGGTATGATCCATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTAAGAGGTCAGCACAACACTAAGGGGCGGTATGATCCATCTTT  500

seq1  GAGCAGTTAGGAAAGGGATAGAGCTGCGACAAATCTGGGCTCAGAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTAGGAAAGGGATAGAGCTGCGACAAATCTGGGCTCAGAGCTGG  550

seq1  GGCTGAATGGTAGCACGTTTGCCTAACATTCATGAGGCCGTGGGAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATGGTAGCACGTTTGCCTAACATTCATGAGGCCGTGGGAGGTGG  600

seq1  GGCTTCTCAGATGTCTCACTGTCTTATTTGGTCACATCTGATGGAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCAGATGTCTCACTGTCTTATTTGGTCACATCTGATGGAAAAAG  650

seq1  TACAAAATAAAAATAAGGGTAAAGTTGTTCAAAGAAACCAAAGCTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAAAAATAAGGGTAAAGTTGTTCAAAGAAACCAAAGCTGAAAA  700

seq1  CCTTCACAGCCGGGAACAGTTTTTTGTTTTTGGCTAACTTCCTAGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGCCGGGAACAGTTTTTTGTTTTTGGCTAACTTCCTAGAATCT  750

seq1  CCCTGTTGTCTGGCTAAGACTTGGTGCAGAGCAGTGAGGTCTCCCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGTCTGGCTAAGACTTGGTGCAGAGCAGTGAGGTCTCCCACAAA  800

seq1  GGAGCCTGCCTGAGCTCTGCTGGCTCTCAGGAAGGCAGGCCCAATCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGCCTGAGCTCTGCTGGCTCTCAGGAAGGCAGGCCCAATCCTGG  850

seq1  GTTTCTCCTCCATGGCGAGACAGTATCCATTAGGCTAAAATGTGCTGCTC  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTTCTCCTCCATGGCGAGACAGTATCCATTAGGCT-AAATGTGCTGCTC  899

seq1  CAAGCGGCAGAAGTGCTCGGAATGTTAAAAATGGTTGCTAAGACAGAAAG  950
      |||||||||||||||||||||||| |||||||||||||| |||||| |||
seq2  CAAGCGGCAGAAGTGCTCGGAATG-TAAAAATGGTTGCT-AGACAG-AAG  946

seq1  TAATCACAATGTGCATATCACAACTGCATTGAAGACACTGTGTTGTGCTC  1000
      ||||||| ||||||||||||| ||||||||| |||||||||| |||||||
seq2  TAATCAC-ATGTGCATATCAC-ACTGCATTG-AGACACTGTG-TGTGCTC  992

seq1  ACATTCCCTTAAATATTGTTCTAAA  1025
      ||||  || ||||||||| ||||||
seq2  ACAT--CCCTAAATATTG-TCTAAA  1014