BAC Information

Click to search

BAC

Clone NameB6Ng01-224J09
Chromosome7 (Build37)
Map Location 17,642,529 - 17,740,264
singlet/doubletdoublet
Overlap genePsg16, LOC100042844, LOC640145, Ceacam3
Upstream geneZfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a
Downstream genePsg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J09.bB6Ng01-224J09.g
ACCGA039002GA039003
length869969
definitionB6Ng01-224J09.b B6Ng01-224J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,739,405 - 17,740,264)(17,642,529 - 17,643,492)
sequence
gaattcttggctattacatatctggcaacctcgagattcttgaacacaat
cgcccctttgtaccagaaaatggctcgaagattctctggaagatttcgag
caagaagaagaacgctttctcctttagcaacactgggcggcactgattca
atactgagctgagcagaggtgggagggcgtccacaggtcaaaatggaggc
tagaaggaagagagaaatccatcagtattaggacttctgtatttggctaa
gatggtgccctgtgtcctgaacaactgtgtccattgctcagccgaggtgt
gtgggtgtctccttggtggaggtcagggcattacctccacgtgctccatg
tccctcactcggtatttcctctctatggtgctctctccttggaggtcagc
atggcccacctcactgtcttcagatccctgctcacactcagtgtagatgg
gggttgggatgatgcctccctactcttcccctacactgattcgtgactct
ccaattctttctgtcgttaagttcctgttgctttattggttctaatccac
atgtgacttcaccttctagctttcattattgatctgtttttcaaggcatg
aagactaggatttcatgaggaccctgatatgtcttacatttaatagtagt
agtagttgtagtagtagtagtagtagtagtagtaatgcttataaatctcc
atggacactgccaatacatgaatttatttaaggaacgaataggtctggag
atacagttattgaaatcttccatttttttaattttttttaaatttattta
tgaattacatttatgttgtgagttttcagacattgggatttatctcagtg
ttgggtgggggggtgtaag
gaattccaagtcagtctagtccacataagtcaggttcaggccagtcaaag
ctacttagtgagaccctgtctcaaaacaaacaagcaagcaaccaagacga
accccaaacttcgtttatctgatcccaaagtctattggacaaggtttccc
tatgtagctcaggctggtcacaaacacccactaagtgctatggttgtagg
tatagacacttgactcatgtctcttttcgagtgtttattttttaaatgca
tattgtatctagtcttatagtcatcattatcaatgtttacaatatttcta
acccataagacagcagttgatcagcctatgtatcatatgtaagcacacac
ctgaccctcaggagagcctctagaggatattattaatattaatgtttgtt
tgtttgtttgcttatttatttatttatttatttatttttgagacagggtg
attctgtgtagccctggccgtcctgcctctaggggatattattaatatta
gtgtttgtttgtttgcttatttatttatttatttatttatttatttttga
gacagggtgattctgtgtagccctggccgtcctggaacttgttctgtaga
ccaggctggcctcgaactcagagatcttctgcctctgcctttctggaatt
aaaggtgtgtgctagcgcacccagttattgagacagggtctcacgtagcc
caagccaaggatgaccctaggcttctgaatttgaatactgggattacaaa
atctataggcctggcctccatggggaacaaaggggaaactgaggctcctg
aaaggtgaagtcctttgtccaagaagatcacataaccagtttcttctaac
cagttgcatgcgatgcccacctctaccttccagcaagccggctctgggat
aggaaggaggctgcttctttctttaactgacttcaattcgggcgcatagg
tcatcttctgggggttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17739405_17740264
seq2: B6Ng01-224J09.b_47_915 (reverse)

seq1  CCTACA-CCCCCCACCC-ACACTGAGATAAAT-CCAATGTCTG-AAACTC  46
      | |||| |||||||||| |||||||||||||| |||||||||| ||||||
seq2  CTTACACCCCCCCACCCAACACTGAGATAAATCCCAATGTCTGAAAACTC  50

seq1  AC-ACATAAATGTAATTCATAAATAAATTTAAAAAAA--TTAAAAAATGG  93
      || ||||||||||||||||||||||||||||||||||  | |||||||||
seq2  ACAACATAAATGTAATTCATAAATAAATTTAAAAAAAATTAAAAAAATGG  100

seq1  AAGA-TTCAAT-ACTGTATCTCCAGACCTATTCGTTCCTTAAATAAATTC  141
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAATAACTGTATCTCCAGACCTATTCGTTCCTTAAATAAATTC  150

seq1  ATGTATTGGCAGTGTCCATGGAGATTTATAAGCATTACTACTACTACTAC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGGCAGTGTCCATGGAGATTTATAAGCATTACTACTACTACTAC  200

seq1  TACTACTACTACAACTACTACTACTATTAAATGTAAGACATATCAGGGTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTACTACAACTACTACTACTATTAAATGTAAGACATATCAGGGTC  250

seq1  CTCATGAAATCCTAGTCTTCATGCCTTGAAAAACAGATCAATAATGAAAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATCCTAGTCTTCATGCCTTGAAAAACAGATCAATAATGAAAG  300

seq1  CTAGAAGGTGAAGTCACATGTGGATTAGAACCAATAAAGCAACAGGAACT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGTGAAGTCACATGTGGATTAGAACCAATAAAGCAACAGGAACT  350

seq1  TAACGACAGAAAGAATTGGAGAGTCACGAATCAGTGTAGGGGAAGAGTAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGACAGAAAGAATTGGAGAGTCACGAATCAGTGTAGGGGAAGAGTAG  400

seq1  GGAGGCATCATCCCAACCCCCATCTACACTGAGTGTGAGCAGGGATCTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATCATCCCAACCCCCATCTACACTGAGTGTGAGCAGGGATCTGA  450

seq1  AGACAGTGAGGTGGGCCATGCTGACCTCCAAGGAGAGAGCACCATAGAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGAGGTGGGCCATGCTGACCTCCAAGGAGAGAGCACCATAGAGA  500

seq1  GGAAATACCGAGTGAGGGACATGGAGCACGTGGAGGTAATGCCCTGACCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACCGAGTGAGGGACATGGAGCACGTGGAGGTAATGCCCTGACCT  550

seq1  CCACCAAGGAGACACCCACACACCTCGGCTGAGCAATGGACACAGTTGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGGAGACACCCACACACCTCGGCTGAGCAATGGACACAGTTGTT  600

seq1  CAGGACACAGGGCACCATCTTAGCCAAATACAGAAGTCCTAATACTGATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACAGGGCACCATCTTAGCCAAATACAGAAGTCCTAATACTGATG  650

seq1  GATTTCTCTCTTCCTTCTAGCCTCCATTTTGACCTGTGGACGCCCTCCCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTCTTCCTTCTAGCCTCCATTTTGACCTGTGGACGCCCTCCCA  700

seq1  CCTCTGCTCAGCTCAGTATTGAATCAGTGCCGCCCAGTGTTGCTAAAGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCAGCTCAGTATTGAATCAGTGCCGCCCAGTGTTGCTAAAGGA  750

seq1  GAAAGTGTTCTTCTTCTTGCTCGAAATCTTCCAGAGAATCTTCGAGCCAT  791
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGTTCTTCTTCTTGCTCGAAATCTTCCAGAGAATCTTCGAGCCAT  800

seq1  TTTCTGGTACAAAGGGGCGATTGTGTTCAAGAATCTCGAGGTTGCCAGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTACAAAGGGGCGATTGTGTTCAAGAATCTCGAGGTTGCCAGAT  850

seq1  ATGTAATAGCCAAGAATTC  860
      |||||||||||||||||||
seq2  ATGTAATAGCCAAGAATTC  869

seq1: chr7_17642529_17643492
seq2: B6Ng01-224J09.g_69_1037

seq1  GAATTCCAAGTCAGTCTAGTCCACATAAGTCAGGTTCAGGCCAGTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCAGTCTAGTCCACATAAGTCAGGTTCAGGCCAGTCAAAG  50

seq1  CTACTTAGTGAGACCCTGTCTCAAAACAAACAAGCAAGCAACCAAGACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTGAGACCCTGTCTCAAAACAAACAAGCAAGCAACCAAGACGA  100

seq1  ACCCCAAACTTCGTTTATCTGATCCCAAAGTCTATTGGACAAGGTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACTTCGTTTATCTGATCCCAAAGTCTATTGGACAAGGTTTCCC  150

seq1  TATGTAGCTCAGGCTGGTCACAAACACCCACTAAGTGCTATGGTTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTCAGGCTGGTCACAAACACCCACTAAGTGCTATGGTTGTAGG  200

seq1  TATAGACACTTGACTCATGTCTCTTTTCGAGTGTTTATTTTTTAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACACTTGACTCATGTCTCTTTTCGAGTGTTTATTTTTTAAATGCA  250

seq1  TATTGTATCTAGTCTTATAGTCATCATTATCAATGTTTACAATATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATCTAGTCTTATAGTCATCATTATCAATGTTTACAATATTTCTA  300

seq1  ACCCATAAGACAGCAGTTGATCAGCCTATGTATCATATGTAAGCACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAGACAGCAGTTGATCAGCCTATGTATCATATGTAAGCACACAC  350

seq1  CTGACCCTCAGGAGAGCCTCTAGAGGATATTATTAATATTAATGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTCAGGAGAGCCTCTAGAGGATATTATTAATATTAATGTTTGTT  400

seq1  TGTTTGTTTGCTTATTTATTTATTTATTTATTTATTTTTGAGACAGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCTTATTTATTTATTTATTTATTTATTTTTGAGACAGGGTG  450

seq1  ATTCTGTGTAGCCCTGGCCGTCCTGCCTCTAGGGGATATTATTAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTAGCCCTGGCCGTCCTGCCTCTAGGGGATATTATTAATATTA  500

seq1  GTGTTTGTTTGTTTGCTTATTTATTTATTTATTTATTTATTTATTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTGTTTGCTTATTTATTTATTTATTTATTTATTTATTTTTGA  550

seq1  GACAGGGTGATTCTGTGTAGCCCTGGCCGTCCTGGAACTTGTTCTGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTGATTCTGTGTAGCCCTGGCCGTCCTGGAACTTGTTCTGTAGA  600

seq1  CCAGGCTGGCCTCGAACTCAGAGATCTTCTGCCTCTGCC-TTCTGGAATT  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAGATCTTCTGCCTCTGCCTTTCTGGAATT  650

seq1  AAAGGTGTGTGCTAGCGCACCCAGTTATTGAGACAGGGTCTCACGTAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCTAGCGCACCCAGTTATTGAGACAGGGTCTCACGTAGCC  700

seq1  CAAGCCAAGGATGACCCTAGGCTTCTGAATTTGAATACTGGGATTACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGGATGACCCTAGGCTTCTGAATTTGAATACTGGGATTACAAA  750

seq1  ATCTATAGGCCTGGCCTCAATGGGGAACAAAGGGGAAACTGAGGCT-CTG  798
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  ATCTATAGGCCTGGCCTCCATGGGGAACAAAGGGGAAACTGAGGCTCCTG  800

seq1  AAAGGTGAAGTCCTTTGTCCAAG-AGATCACATAACCAGTTTC-TCTAAC  846
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  AAAGGTGAAGTCCTTTGTCCAAGAAGATCACATAACCAGTTTCTTCTAAC  850

seq1  CAGTTGCATGCGATGCCCACCTCCTACC-TCCAGCAAGCCGGCTCTGGGA  895
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CAGTTGCATGCGATGCCCACCT-CTACCTTCCAGCAAGCCGGCTCTGGGA  899

seq1  TAGGAAGGAGGCTGCTCCTTTCTTAAAC-GACTTCAATTCGGGGCGCAGA  944
      |||||||||||||||| ||||||| ||| ||||||||||| ||||||| |
seq2  TAGGAAGGAGGCTGCTTCTTTCTTTAACTGACTTCAATTC-GGGCGCATA  948

seq1  GGCCA-CTTCTGGGGGTTGGA  964
      || || |||||||||||||||
seq2  GGTCATCTTCTGGGGGTTGGA  969