BAC Information

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BAC

Clone NameB6Ng01-224M19
Chromosome7 (Build37)
Map Location 90,558,523 - 90,726,053
singlet/doubletdoublet
Overlap geneEG666160
Upstream geneAdamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik
Downstream geneTmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224M19.bB6Ng01-224M19.g
ACCGA039159GA039160
length1,152878
definitionB6Ng01-224M19.b B6Ng01-224M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,558,523 - 90,559,698)(90,725,180 - 90,726,053)
sequence
gaattcaccaagatcagcctgcttatgcctctcaagtacatgcctgacat
tcacccaaggttttaagaaaaaaacctgaagtggatgatagagcaagaaa
ttttgaattaccaaagaaaagagggagaaattagtcacttataaaaatta
atctataagtgacttaagctgtgtttctgtctctggggttatgcctgatg
gttacctaacattgccacagaatttctatagaacaaaatgtacctacaat
gtcaagatactcttttaagaattaggaatgtcaggtgatagagagatgga
tcagcagttaagagcactgattgctcttccaaaggtcccgagtttgattc
ccagaaatcacacggttgctcacaaccatctataataggatctgatgctc
tcttctagtgtgtctgaatacacctacaatgtactcatataaatgaaata
agtgaatcttaaaagacttagggatgtcgaaaaaattgggataaattcca
tgttcttaactgagaaaatgggaaagaccaactaagcaacaaaaacctag
caataccagccggcaccctagaaattgaggcaagaagattctgagttcaa
ggctagtctgggctggagaatgagacctcagaacaaacaagttttaaaaa
attaataataaaaaataccaaaataataaacaggtatatcccttcgcaac
taagacaaaaataaagaactccaaaagcaatgactatcttaataagatat
ccttaggaagttgtctctgacaagatgattgatttaaaccaagttctgtc
agaatctggggcattagcattcaggaattttctgaaaactgccacctctt
ggatgtatgattttattctcagttgctgaacttgtctgagcctagcctgt
aaaattcagagaggctggacattgggtactataaatgatagtaattgtaa
ggtttagagtatttttatgatttctgatttatttatgcaatgtcccccat
gcaaaagagaaaaagatgtcaaccctctgagggactttgtaatttaaatg
aagagacctgcatggggcagcattcctcttgaaacttgaaatgcacctgc
tgtaggcttagatctttttctttatattccattttttatatagatatttt
ct
gaattctgcgtaggtggctaatcttagaaaagagatgccacatgcaggac
ctcacatcgcccagaaagacttgggtctgtgctctttcagctgaggcaga
aatgtattcctaaggttcctttctccgactacaacccagatctgtgagat
ttggagggtggcaagaaagactaggggcatcaggaacagggaatacagtc
tcttgccagctggcctgctccttccatggtccacaccttagaccctccac
aactccagcctctactgaatctcctcagcagctgagtcctgggtcaggtg
tgggtacagctcaccaacttctttgtggggcattacatctttgatggtag
aggttatttggtttgggacctgggaacaagggactgtggtgcgtatcaaa
gcagacctggcctcctagcatccgtcagtcccttcctggcatacttggtc
accaaccctgaactttccagcccatgggggtgggctgcccttcctccaga
ggctcttccctatataatacagacagtttggtctctctcctccttttctc
tctctgcaagtgcaccttttctctctccctcctccatctagagagacttc
cctgccttggtccttggggccagtgtcctcaccctcctgagaccagtttc
ccaagaaacctgcaggcttgaattggctcatttttatcggtggcagagaa
atagcctatcagaggtatatgagagagctatttaggttgtagtttatcct
ttggggtcctctctttctcctcattataatttttgaggaacacaatgatt
atttcagttagtaaaagggaatgggaaatgcgtctttatagatgtggata
aaatgggtgatatggagatgggagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_90558523_90559698
seq2: B6Ng01-224M19.b_48_1199

seq1  GAATTCACCAAGATCAGCCTGCTTATGCCTCTCAAGTACATGCCTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGATCAGCCTGCTTATGCCTCTCAAGTACATGCCTGACAT  50

seq1  TCACCCAAGGTTTTAAGAAAAAAACCTGAAGTGGATGATAGAGCAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAGGTTTTAAGAAAAAAACCTGAAGTGGATGATAGAGCAAGAAA  100

seq1  TTTTGAATTACCAAAGAAAAGAGGGAGAAATTAGTCACTTATAAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTACCAAAGAAAAGAGGGAGAAATTAGTCACTTATAAAAATTA  150

seq1  ATCTATAAGTGACTTAAGCTGTGTTTCTGTCTCTGGGGTTATGCCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAGTGACTTAAGCTGTGTTTCTGTCTCTGGGGTTATGCCTGATG  200

seq1  GTTACCTAACATTGCCACAGAATTTCTATAGAACAAAATGTACCTACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAACATTGCCACAGAATTTCTATAGAACAAAATGTACCTACAAT  250

seq1  GTCAAGATACTCTTTTAAGAATTAGGAATGTCAGGTGATAGAGAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATACTCTTTTAAGAATTAGGAATGTCAGGTGATAGAGAGATGGA  300

seq1  TCAGCAGTTAAGAGCACTGATTGCTCTTCCAAAGGTCCCGAGTTTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTAAGAGCACTGATTGCTCTTCCAAAGGTCCCGAGTTTGATTC  350

seq1  CCAGAAATCACACGGTTGCTCACAACCATCTATAATAGGATCTGATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCACACGGTTGCTCACAACCATCTATAATAGGATCTGATGCTC  400

seq1  TCTTCTAGTGTGTCTGAATACACCTACAATGTACTCATATAAATGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGTGTGTCTGAATACACCTACAATGTACTCATATAAATGAAATA  450

seq1  AGTGAATCTTAAAAGACTTAGGGATGTCGAAAAAATTGGGATAAATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCTTAAAAGACTTAGGGATGTCGAAAAAATTGGGATAAATTCCA  500

seq1  TGTTCTTAACTGAGAAAATGGGAAAGACCAACTAAGCAACAAAAACCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAACTGAGAAAATGGGAAAGACCAACTAAGCAACAAAAACCTAG  550

seq1  CAATACCAGCCGGCACCCTAGAAATTGAGGCAAGAAGATTCTGAGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGCCGGCACCCTAGAAATTGAGGCAAGAAGATTCTGAGTTCAA  600

seq1  GGCTAGTCTGGGCTGGAGAATGAGACCTCAGAACAAACAAGTTTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCTGGGCTGGAGAATGAGACCTCAGAACAAACAAGTTTTAAAAA  650

seq1  ATTAATAATAAAAAATACCAAAATAATAAACAGGTATATCCCTTCGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATAAAAAATACCAAAATAATAAACAGGTATATCCCTTCGCAAC  700

seq1  TAAGACAAAAATAAAGAACTCCAAAAGCAATGACTATCTTAATAAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAAATAAAGAACTCCAAAAGCAATGACTATCTTAATAAGATAT  750

seq1  CCTTAGGAAGTTGTCTCTGACAAGATGATTGATTTAAACCAAGTTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGAAGTTGTCTCTGACAAGATGATTGATTTAAACCAAGTTCTGTC  800

seq1  AGAATCTGGGGCATTAGCATTCAGGAATTTTCTGAAAACTGCCACCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGGGCATTAGCATTCAGGAATTTTCTGAAAACTGCCACCTCTT  850

seq1  GGATGTATGATTTTATTCTCAGTTGCTGAACTTGTCTGAGCCTAGCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATGATTTTATTCTCAGTTGCTGAACTTGTCTGAGCCTAGCCTGT  900

seq1  AAAATTCAGAGAGGCTGGACATTGGGTACTATAAATGATAGTAATTGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGAGAGGCTGGACATTGGGTACTATAAATGATAGTAATTGTAA  950

seq1  GGTTTTAGAGTAATTTTTATGATTTCTGAATTTATTAATGCAATGTCCCC  1000
      || |||||||| |||||||||||||||| ||||||| |||||||||||||
seq2  GG-TTTAGAGT-ATTTTTATGATTTCTG-ATTTATTTATGCAATGTCCCC  997

seq1  CATGCAAAAAGAGAAAAAGAATGTCAACCCTCCTGAGGGACTTTGTAATT  1050
      ||||| ||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CATGC-AAAAGAGAAAAAG-ATGTCAACCCT-CTGAGGGACTTTGTAATT  1044

seq1  TAAAATGGAAGGAGGACCCTGCAATGGGGCAAGCATTCCCTTCTTTGAAA  1100
      | ||||| |  ||    ||||| ||||||| ||||||||  ||||   ||
seq2  T-AAATGAAGAGA----CCTGC-ATGGGGC-AGCATTCC--TCTT--GAA  1083

seq1  ACTTGAAAATGCA-CTGCTGTAGGCTTTAGGATTCTTTTTCTTTTATTAT  1149
      ||||| ||||||| ||||||||||| ||||   |||||||||||   |||
seq2  ACTTG-AAATGCACCTGCTGTAGGC-TTAG--ATCTTTTTCTTT--ATAT  1127

seq1  TCTATTTTTTATTATTAGGTATTTTCT  1176
      || |||||||||   ||| ||||||||
seq2  TCCATTTTTTAT--ATAGATATTTTCT  1152

seq1: chr7_90725180_90726053
seq2: B6Ng01-224M19.g_70_947 (reverse)

seq1  ATCTCT-CCATCTCCATATCACCCA-TTTATCCACATCTATAAAGACGCA  48
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCTCTCCCATCTCCATATCACCCATTTTATCCACATCTATAAAGACGCA  50

seq1  TTTCCCATTCCCTTTTACTAACTGAAATAATCATTGTGTTCCTCAAAAAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTCCCTTTTACTAACTGAAATAATCATTGTGTTCCTCAAAAAT  100

seq1  TATAATGAGGAGAAAGAGAGGACCCCAAAGGATAAACTACAACCT-AATA  147
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATAATGAGGAGAAAGAGAGGACCCCAAAGGATAAACTACAACCTAAATA  150

seq1  GCTCTCTCATATACCTCTGATAGGCTATTTCTCTGCCACCGAT-AAAATG  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTCTCTCATATACCTCTGATAGGCTATTTCTCTGCCACCGATAAAAATG  200

seq1  AGCCAATTCAAGCCTGCAGGTTTCTTGGGAAACTGGTCTCAGGAGGGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTCAAGCCTGCAGGTTTCTTGGGAAACTGGTCTCAGGAGGGTGA  250

seq1  GGACACTGGCCCCAAGGACCAAGGCAGGGAAGTCTCTCTAGATGGAGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGCCCCAAGGACCAAGGCAGGGAAGTCTCTCTAGATGGAGGAG  300

seq1  GGAGAGAGAAAAGGTGCACTTGCAGAGAGAGAAAAGGAGGAGAGAGACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAAAAGGTGCACTTGCAGAGAGAGAAAAGGAGGAGAGAGACCA  350

seq1  AACTGTCTGTATTATATAGGGAAGAGCCTCTGGAGGAAGGGCAGCCCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTGTATTATATAGGGAAGAGCCTCTGGAGGAAGGGCAGCCCACC  400

seq1  CCCATGGGCTGGAAAGTTCAGGGTTGGTGACCAAGTATGCCAGGAAGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGCTGGAAAGTTCAGGGTTGGTGACCAAGTATGCCAGGAAGGGA  450

seq1  CTGACGGATGCTAGGAGGCCAGGTCTGCTTTGATACGCACCACAGTCCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGGATGCTAGGAGGCCAGGTCTGCTTTGATACGCACCACAGTCCCT  500

seq1  TGTTCCCAGGTCCCAAACCAAATAACCTCTACCATCAAAGATGTAATGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGTCCCAAACCAAATAACCTCTACCATCAAAGATGTAATGCC  550

seq1  CCACAAAGAAGTTGGTGAGCTGTACCCACACCTGACCCAGGACTCAGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGAAGTTGGTGAGCTGTACCCACACCTGACCCAGGACTCAGCTG  600

seq1  CTGAGGAGATTCAGTAGAGGCTGGAGTTGTGGAGGGTCTAAGGTGTGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGATTCAGTAGAGGCTGGAGTTGTGGAGGGTCTAAGGTGTGGAC  650

seq1  CATGGAAGGAGCAGGCCAGCTGGCAAGAGACTGTATTCCCTGTTCCTGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGGAGCAGGCCAGCTGGCAAGAGACTGTATTCCCTGTTCCTGAT  700

seq1  GCCCCTAGTCTTTCTTGCCACCCTCCAAATCTCACAGATCTGGGTTGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAGTCTTTCTTGCCACCCTCCAAATCTCACAGATCTGGGTTGTAG  750

seq1  TCGGAGAAAGGAACCTTAGGAATACATTTCTGCCTCAGCTGAAAGAGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAAAGGAACCTTAGGAATACATTTCTGCCTCAGCTGAAAGAGCAC  800

seq1  AGACCCAAGTCTTTCTGGGCGATGTGAGGTCCTGCATGTGGCATCTCTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAGTCTTTCTGGGCGATGTGAGGTCCTGCATGTGGCATCTCTTT  850

seq1  TCTAAGATTAGCCACCTACGCAGAATTC  874
      ||||||||||||||||||||||||||||
seq2  TCTAAGATTAGCCACCTACGCAGAATTC  878