BAC Information

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BAC

Clone NameB6Ng01-225J03
Chromosome18 (Build37)7 (Build37)
Map Location 84,856,226 - 84,857,37798,546,574 - 98,547,052
singlet/doubletsingletsinglet
Overlap geneLOC100039711
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2
Downstream geneLOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225J03.bB6Ng01-225J03.g
ACCGA039731GA039732
length1,161747
definitionB6Ng01-225J03.b B6Ng01-225J03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,856,226 - 84,857,377)(98,546,574 - 98,547,052)
sequence
gaattcaatttccagcaaccacatggtggctcacaaccatccataatggg
atctgatgccctcttctgctgtgtctgaagacagctgtgtactcacatac
ataaaataaataattctttaaaattttttttcaactttcagcagatgacc
atgaattttcatataaacataaaagcatatttattttcaactggatccca
aacctcttgctagcttcggtttacagcagcttctttgcttgatagtgcaa
tcctgccaagtgcccatcagcaagcacatccaacaggatggaccatggag
tcagccctatctaactctcaggggaccatattggtgccttgcaaccccag
cacccagaaaggtgagcctagagggtcttgagtttgaggtggccaagatt
tttttttttttttttttttttttttttttttttttgagaaagggtttttc
tctgtgtaggcctggctgtcctggaactcactctgtaaaccaggctggac
ccgaaactagaaatccccctgcctctgcctcccgagtgctgggattaaag
gtgtgccccacccccccccgtgggggccaacatcttgtttcaaccccccc
accctccaaacccttctctggggctgcccgatataccatatactttttcc
tctcaataataatcacatttccacatagctgtaaaaaagggcttaaaaca
ttccacatttgatttcacctctccaagattttacttttaatgtctgaaat
tttttgtccaaatgtgaagaaagcagtgagatattaaagtcatttaaaca
tatgatctccatgaaaacccaggctggtttttgaactcccctgtgtaaca
ggtctttcctgccttttacttctcaaatactgattacaggcatacaccac
catgtccctgttcaaaaaaaaagaaaagcagctaaaaatcaataataaac
tttcatgttttatagatacaagatttaaggagatgggcttcagccagtta
agaccacgttactgctcttcccaaaggaccaacccaagtccagaacccac
attcaggtggtcacaacatctgttaactcaggttatgcactcctctgttc
accaccaccaccacaaatttaaaaactagtaaaaataaatttttaaatat
cgatttaagtc
gaattcctttctagttagactcagaaatttagcattcccaaactggagga
gcagttcacatggggaatacaggccatacatagtccattggttactgtca
ctacacaattaactctaaacctactgatattggaaagcattcaagcttag
gggatatagagtcactcgttcagcatacagcctgtgaaagtgctaccact
aacatatcagacatgccatttctagctctatacaaggaggaggaggagga
ggaggaggaggatcctaccttcctggcctttatgaactcacaggggcgtg
tcttcaacttggagtgcctatagaaccagggaggtgagtttttaaagaac
cttttattatggaaatgctcaaacatgcccaaagcagagagaatggatta
atcagtccccagttttgcttccttgtttcatctctccaccccttgccact
tatttaaatgttttcttcctagaataatttaaatcatatcatcttattct
ccaaacaactcagtgtgcttttctaaaacatcattttaatataagcaaaa
tataattattaaaatgagaaaaacaagtttctgttcagtatttctcaaat
gtctttacacacctctctcacagtctgatgtaactactgtccatcaaaat
caattctatagttttgtattttcatgtaaacctttaaatctctctgcacc
tctctctctctctttcctctctctctctctctctctctctctcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84856226_84857377
seq2: B6Ng01-225J03.b_44_1204 (reverse)

seq1  GACTTAAAATATCGATAATTTTTAAAAATTTATTTTTACTATGTTTTTAA  50
      |||||||   |||||||   ||||||||||||||||||||| ||||||||
seq2  GACTTAA---ATCGATA---TTTAAAAATTTATTTTTACTA-GTTTTTAA  43

seq1  ATTGTGTGTGTGTGTGTGTGAACCAGAGGAGTTGCATACCCTGGAGTT-A  99
      ||| ||||   |||   ||||| |||||||| |||||| ||| ||||| |
seq2  ATT-TGTGGTGGTGGTGGTGAA-CAGAGGAG-TGCATAACCT-GAGTTAA  89

seq1  CAGATGGTTGTGACCACCTG-ATGTGGGTTCTGGGACTTGGGGTTGGTCC  148
      ||||| |||||||||||||| ||||||||||| |||||| ||||||||||
seq2  CAGAT-GTTGTGACCACCTGAATGTGGGTTCT-GGACTT-GGGTTGGTCC  136

seq1  TCTGGG-AGAGCAGT-ACGTGGTCTTAACT-GCTGA--GCCATCT-CTTT  192
      | |||| |||||||| |||||||||||||| |||||   |||||| ||| 
seq2  TTTGGGAAGAGCAGTAACGTGGTCTTAACTGGCTGAAGCCCATCTCCTTA  186

seq1  AATC-TGTATCTAT-AAACATGAA--GTTATTATTGA-TTTTAGCTGC-T  236
      |||| ||||||||| |||||||||   |||||||||| |||||||||| |
seq2  AATCTTGTATCTATAAAACATGAAAGTTTATTATTGATTTTTAGCTGCTT  236

seq1  TTCTTTTCTTTTGAACAGGG-CATGGT-GTGTATGCCTGTAATCAGTATT  284
      ||||||| |||||||||||| |||||| ||||||||||||||||||||||
seq2  TTCTTTTTTTTTGAACAGGGACATGGTGGTGTATGCCTGTAATCAGTATT  286

seq1  TGAGAAGT-AAAGGCAGG-AAGACCTGCTACACA-GGGAGTTC-AAAACC  330
      |||||||| ||||||||| |||||||| |||||| |||||||| ||||||
seq2  TGAGAAGTAAAAGGCAGGAAAGACCTGTTACACAGGGGAGTTCAAAAACC  336

seq1  AGCCTGGG-TTTCAT-GAGATCATATGTTTAAATGACTTTAAAATC-CAC  377
      |||||||| |||||| |||||||||||||||||||||||||| ||| |||
seq2  AGCCTGGGTTTTCATGGAGATCATATGTTTAAATGACTTTAATATCTCAC  386

seq1  GGCTCT-TTCACATTTCGACAAACAACTTTCAGACATTAAATGTAAAATC  426
       ||| | ||||||||| |||||| || |||||||||||||| ||||||||
seq2  TGCTTTCTTCACATTTGGACAAA-AAATTTCAGACATTAAAAGTAAAATC  435

seq1  TTGGAGTGCTTTAATCAAATCTGCTGATGTTTTAAGACCTTTTGTACAGC  476
      |||||| | |  |||||||| ||   |||||||||| |||||| ||||||
seq2  TTGGAGAGGTGAAATCAAATGTG-GAATGTTTTAAGCCCTTTTTTACAGC  484

seq1  TATCTGTAAATGTGATTATTATTGAGATGAAAAAGTATATGGTGAATCGG  526
      ||| || |||||||||||||||||||| |||||||||||||||  |||||
seq2  TATGTGGAAATGTGATTATTATTGAGAGGAAAAAGTATATGGTATATCGG  534

seq1  GCAGCCACAGAGAAGTGATTTGAGGGTGGGGGGGTTGAGACAAGATCTTG  576
      |||||| |||||||| | || ||||||||||||||||| ||||||| |||
seq2  GCAGCCCCAGAGAAGGGTTTGGAGGGTGGGGGGGTTGAAACAAGATGTTG  584

seq1  GCCACCACCGGGCGTGGTGGGGCACACCTTTAATCCCAGCACTCGGGAGG  626
      ||| |||| ||| | |||||||||||||||||||||||||||||||||||
seq2  GCCCCCACGGGGGGGGGTGGGGCACACCTTTAATCCCAGCACTCGGGAGG  634

seq1  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  676
      |||||||||| ||||||||   |||| | |||||||||| ||||||||||
seq2  CAGAGGCAGGGGGATTTCTAGTTTCGGGTCCAGCCTGGTTTACAGAGTGA  684

seq1  GTTCCAGGACAGCCAGGACTACACAGAGAAAAACCCTGTCTC-AAAAAAA  725
      ||||||||||||||||| ||||||||||||||||||| |||| |||||||
seq2  GTTCCAGGACAGCCAGGCCTACACAGAGAAAAACCCTTTCTCAAAAAAAA  734

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTGGCCACCTCAAACTCAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTGGCCACCTCAAACTCAA  784

seq1  GACCCTCTAGGCTCACCTTTCTGGGTGCTGGGGTTGCAAGGCACCAATAT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCTAGGCTCACCTTTCTGGGTGCTGGGGTTGCAAGGCACCAATAT  834

seq1  GGTCCCCTGAGAGTTAGATAGGGCTGACTCCATGGTCCATCCTGTTGGAT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTGAGAGTTAGATAGGGCTGACTCCATGGTCCATCCTGTTGGAT  884

seq1  GTGCTTGCTGATGGGCACTTGGCAGGATTGCACTATCAAGCAAAGAAGCT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTGATGGGCACTTGGCAGGATTGCACTATCAAGCAAAGAAGCT  934

seq1  GCTGTAAACCGAAGCTAGCAAGAGGTTTGGGATCCAGTTGAAAATAAATA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAACCGAAGCTAGCAAGAGGTTTGGGATCCAGTTGAAAATAAATA  984

seq1  TGCTTTTATGTTTATATGAAAATTCATGGTCATCTGCTGAAAGTTGAAAA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATGTTTATATGAAAATTCATGGTCATCTGCTGAAAGTTGAAAA  1034

seq1  AAAATTTTAAAGAATTATTTATTTTATGTATGTGAGTACACAGCTGTCTT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAGAATTATTTATTTTATGTATGTGAGTACACAGCTGTCTT  1084

seq1  CAGACACAGCAGAAGAGGGCATCAGATCCCATTATGGATGGTTGTGAGCC  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGCAGAAGAGGGCATCAGATCCCATTATGGATGGTTGTGAGCC  1134

seq1  ACCATGTGGTTGCTGGAAATTGAATTC  1152
      |||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGAAATTGAATTC  1161

seq1: chr7_98546574_98547052
seq2: B6Ng01-225J03.g_326_810

seq1  TCCTACCTTCCTGGCCTTTATGAACTCACAGGGGCGTGTCTTCAACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTTCCTGGCCTTTATGAACTCACAGGGGCGTGTCTTCAACTTGG  50

seq1  AGTGCCTATAGAACCAGGGAGGTGAGTTTTTAAAGAACCTTTTATTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTATAGAACCAGGGAGGTGAGTTTTTAAAGAACCTTTTATTATGG  100

seq1  AAATGCTCAAACATGCCCAAAGCAGAGAGAATGGATTAATCAGTCCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCAAACATGCCCAAAGCAGAGAGAATGGATTAATCAGTCCCCAG  150

seq1  TTTTGCTTCCTTGTTTCATCTCTCCACCCCTTGCCACTTATTTAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCCTTGTTTCATCTCTCCACCCCTTGCCACTTATTTAAATGTT  200

seq1  TTCTTCCTAGAATAATTTAAATCATATCATCTTATTCTCCAAACAACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTAGAATAATTTAAATCATATCATCTTATTCTCCAAACAACTCA  250

seq1  GTGTGCTTTTCTAAAACATCATTTTAATATAAGCAAAATATAATTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTTTCTAAAACATCATTTTAATATAAGCAAAATATAATTATTAA  300

seq1  AATGAGAAAAACAAGTTTCTGTTCAGTATTTCTCAAATGTCTTTACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAACAAGTTTCTGTTCAGTATTTCTCAAATGTCTTTACACAC  350

seq1  CTCTCTCACAGTCTGATGTAACTACTGTCCATCAAAATCAA-TCTATAG-  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CTCTCTCACAGTCTGATGTAACTACTGTCCATCAAAATCAATTCTATAGT  400

seq1  TTTGTA-TTTCATGTAA--CCTTAAATCTCTCTGCACCTCTCTCTCTCTC  445
      |||||| ||||||||||  | |||||||||||||||||||||||||||||
seq2  TTTGTATTTTCATGTAAACCTTTAAATCTCTCTGCACCTCTCTCTCTCTC  450

seq1  -TTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  479
       |||||||||||||||||||||||||||||| |||
seq2  TTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  485