BAC Information

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BAC

Clone NameB6Ng01-226N14
Chromosome6 (Build37)7 (Build37)
Map Location 89,377,548 - 89,377,96134,565,896 - 34,567,023
singlet/doubletsingletsinglet
Overlap geneChchd6
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
Downstream geneTxnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N14.bB6Ng01-226N14.g
ACCGA040672GA040673
length1,1671,122
definitionB6Ng01-226N14.b B6Ng01-226N14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,377,548 - 89,377,961)(34,565,896 - 34,567,023)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cacatgctggcatggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtaccagcaatacctctcctgggcatgtatccaga
agatgtcccaaccggtaagaaggacacatgctccaccatgttcatagcag
tcttatttataatagccagaagctggaaaaaacccagatgcccctcaaca
gaggaatggatacagaaaatgtggtacatttacacaatggcatactactc
agctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacc
tggagggcatcatcctgagtgaggtaacccaatcacaaaggaactctcac
aatatgtactcactgataagtggatattagcccagaaacttaggaaaccc
aagatataagacacaatttgctaaacatatgaaactcaagaagaatgaag
actgaagtgtggacaccatgcccctccttagaattgggaacaaaacaccc
atggaaggtgttacagagacaaagtttggagctgtgatgaaagggtggac
catctagagactgccatatccagggatccaccctataatcaccttccaaa
cgctgacaccattgcatacactagcaagtgtttgctgaaatgacccagat
atagctgtctcttgtaagactatgcaggggcctagcaaacacagaagtgg
atgctcacagtcagctattggatggatcacagggctcccaatggaggagc
tattgacagtacccaaggagctaaagggatctgcaaccctataggtggaa
cacattatgactaccagtaccccagagctctgactctagctgcatatatg
catatgatagtcgcatcactgaaagaggaggcccattgactgccacttta
tatggcccagtacaggggacggctagtcaaaaaaaaaaagattgggaatg
tgtgtgggtagggaagt
gaattctgttgagattctgagatttcctccatgtgattaatctgtgtggt
tccttacagttgggtcagcgttgggcagtctggagggctgctgaaggagc
aggctgtgtattggagccttgtctagtttagaaccttggattgggaccat
cctatccaaaacaagttacccataagtcatggaggagacagcagcagcca
tgactcaagcactgcagaaatctgagaaatctaaggtatcactcacattt
ttttttctgtgacctttcttttcctactacactcatagtggcctttttgc
ctacactttccaggttttgggaaagcagaagcagttataaattctagcca
aggacagtataatggttagagacatggacttcctgaaaatagtgaatggg
tccatgatgttatattatcagtcctacctaattgtacccagcagggtaaa
ttgccatacagagtcgttggctgactcccattgtgtgggactgaactttc
cacactgggatcttgaatcaacatttctggcttcagaatgtcactttcgg
gctagctatatttgccaaaggggcatacatagtcttcctaataatgttac
tatagaccacgagatatacttcatgaaaggacacagagtaaagtattata
ttttcactgaccaagtgcattacaaccttgaagccctgtaagggaaggca
gatgataattatggaaactcaggcctctacccaccaactggacatttagg
ggtacagaatggagacaatcagtgattttttttttctcctcagtgctttg
tgaagaatgtggtctacctggtctgtgctcatgagaacatcattttctgc
aacagtgagggtgtggagatcctgttctccttgttaggcatgctgtgtct
tctcttcattgtatttcccccaaaacccttggcctatgaaaaggcagcct
ctgtcacaagcctattatttctgatgaagagggagactttactatcagga
gtcttctttgggggaaaggtatgagttacagaaccaccaggtctgttatc
aggtgtgatgttgcatcatccatccatccaggccatgcttgcctgatgga
agcctccttcaacaagtatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89377548_89377961
seq2: B6Ng01-226N14.b_809_1213 (reverse)

seq1  ACTTCCCTACC--CACTCATTCCCA----TTTTTTTTGGCCCTGGAGTTC  44
      |||||||||||  ||| ||||||||    ||||||||    || |   ||
seq2  ACTTCCCTACCCACACACATTCCCAATCTTTTTTTTTTTGACTAGCCGTC  50

seq1  CCCTGTACTGGGGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTTC  94
      |||||||||||| |||||| |||    ||   |||||||||||   ||||
seq2  CCCTGTACTGGGCCATATAAAGTGGCAGT---CAATGGGCCTCCTCTTTC  97

seq1  AGTGATGGCCGAGTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  144
      |||||||  |||     | ||| | ||  | |||||||||||||||| ||
seq2  AGTGATG--CGA-----CTATCATATG-CATATATGCAGCTAGAGTC-AG  138

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC  194
      ||||| |||||||||| ||| |||||||| ||||||||||||||||||||
seq2  AGCTCTGGGGTACTGG-TAG-TCATAATG-TGTTCCACCTATAGGGTTGC  185

seq1  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  244
      ||||||||||||||||||||||||| ||  ||||||||||||||||||||
seq2  AGATCCCTTTAGCTCCTTGGGTACTGTCAATAGCTCCTCCATTGGGAGCC  235

seq1  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  294
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  285

seq1  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATA  344
      |||||| ||||||||| |||||||||||||| ||||||||| ||||   |
seq2  GGCCCCTGCATAGTCTTACAAGAGACAGCTATATCTGGGTCATTTCAGCA  335

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGG  394
      ||  |||||||||||||||||||||||||||||||||||| ||||||| |
seq2  AACACTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGGTGATTATAG  385

seq1  GGTGGATCCCTGGATATGGC  414
      ||||||||||||||||||||
seq2  GGTGGATCCCTGGATATGGC  405

seq1: chr7_34565896_34567023
seq2: B6Ng01-226N14.g_69_1190 (reverse)

seq1  GAGATACTTGTTGAA-GAAGCTTTCATCAGGC-AGCATGGCCTGGATGTG  48
      ||||||||||||||| || |||| |||||||| ||||||||||||||| |
seq2  GAGATACTTGTTGAAGGAGGCTTCCATCAGGCAAGCATGGCCTGGATG-G  49

seq1  ATGAGATTGATGCAACATCACACCCTGATAACAGAACTTGGTGATCCTGT  98
      ||| || ||||||||||||||| ||||||||||| || ||||| | ||||
seq2  ATG-GA-TGATGCAACATCACA-CCTGATAACAG-ACCTGGTGGTTCTGT  95

seq1  AAACCTCCAATACCTTTCCCCCAAAGAAGGCTCTTGAATAGTAAAAGTCT  148
      ||  |||  |||||||||||||||||||| ||| || ||||| |||||||
seq2  AA--CTC--ATACCTTTCCCCCAAAGAAGACTCCTG-ATAGT-AAAGTCT  139

seq1  CCCTCTTCATCAGAAAT-ATAGGCTTGTGACAGAGGCTGCC-TTTCATAG  196
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CCCTCTTCATCAGAAATAATAGGCTTGTGACAGAGGCTGCCTTTTCATAG  189

seq1  GCCAAGGGTTTTGGGGGAAATACAATGAAGAGAAGACACAGCATGCCTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGTTTTGGGGGAAATACAATGAAGAGAAGACACAGCATGCCTAA  239

seq1  CAAGGAGAACAGGATCTCCACACCCTCACTGTTGCAGAAAATGATGTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAACAGGATCTCCACACCCTCACTGTTGCAGAAAATGATGTTCT  289

seq1  CATGAGCACAGACCAGGTAGACCACATTCTTCACAAAGCACTGAGGAG-A  345
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGAGCACAGACCAGGTAGACCACATTCTTCACAAAGCACTGAGGAGAA  339

seq1  AAAAAAAATCACTGATTGTCTCCATTCTGTACCCCTAAATGTCCAGTTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCACTGATTGTCTCCATTCTGTACCCCTAAATGTCCAGTTGG  389

seq1  TGGGTAGAGGCCTGAGTTTCCATAATTATCATCTGCCTTCCCTTACAGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGGCCTGAGTTTCCATAATTATCATCTGCCTTCCCTTACAGGG  439

seq1  CTTCAAGGTTGTAATGCACTTGGTCAGTGAAAATATAATACTTTACTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGTTGTAATGCACTTGGTCAGTGAAAATATAATACTTTACTCTG  489

seq1  TGTCCTTTCATGAAGTATATCTCGTGGTCTATAGTAACATTATTAGGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCATGAAGTATATCTCGTGGTCTATAGTAACATTATTAGGAAG  539

seq1  ACTATGTATGCCCCTTTGGCAAATATAGCTAGCCCGAAAGTGACATTCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTATGCCCCTTTGGCAAATATAGCTAGCCCGAAAGTGACATTCTG  589

seq1  AAGCCAGAAATGTTGATTCAAGATCCCAGTGTGGAAAGTTCAGTCCCACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAATGTTGATTCAAGATCCCAGTGTGGAAAGTTCAGTCCCACA  639

seq1  CAATGGGAGTCAGCCAACGACTCTGTATGGCAATTTACCCTGCTGGGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAGTCAGCCAACGACTCTGTATGGCAATTTACCCTGCTGGGTAC  689

seq1  AATTAGGTAGGACTGATAATATAACATCATGGACCCATTCACTATTTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTAGGACTGATAATATAACATCATGGACCCATTCACTATTTTCA  739

seq1  GGAAGTCCATGTCTCTAACCATTATACTGTCCTTGGCTAGAATTTATAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCATGTCTCTAACCATTATACTGTCCTTGGCTAGAATTTATAAC  789

seq1  TGCTTCTGCTTTCCCAAAACCTGGAAAGTGTAGGCAAAAAGGCCACTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCTTTCCCAAAACCTGGAAAGTGTAGGCAAAAAGGCCACTATG  839

seq1  AGTGTAGTAGGAAAAGAAAGGTCACAGAAAAAAAAATGTGAGTGATACCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTAGGAAAAGAAAGGTCACAGAAAAAAAAATGTGAGTGATACCT  889

seq1  TAGATTTCTCAGATTTCTGCAGTGCTTGAGTCATGGCTGCTGCTGTCTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTCAGATTTCTGCAGTGCTTGAGTCATGGCTGCTGCTGTCTCC  939

seq1  TCCATGACTTATGGGTAACTTGTTTTGGATAGGATGGTCCCAATCCAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTTATGGGTAACTTGTTTTGGATAGGATGGTCCCAATCCAAGG  989

seq1  TTCTAAACTAGACAAGGCTCCAATACACAGCCTGCTCCTTCAGCAGCCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTAGACAAGGCTCCAATACACAGCCTGCTCCTTCAGCAGCCCT  1039

seq1  CCAGACTGCCCAACGCTGACCCAACTGTAAGGAACCACACAGATTAATCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGCCCAACGCTGACCCAACTGTAAGGAACCACACAGATTAATCA  1089

seq1  CATGGAGGAAATCTCAGAATCTCAACAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  CATGGAGGAAATCTCAGAATCTCAACAGAATTC  1122