BAC Information

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BAC

Clone NameB6Ng01-227A08
Chromosome7 (Build37)
Map Location 29,885,842 - 30,025,049
singlet/doubletdoublet
Overlap geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b
Upstream geneLOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1
Downstream geneSpint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227A08.bB6Ng01-227A08.g
ACCGA040799GA040800
length1,0941,122
definitionB6Ng01-227A08.b B6Ng01-227A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,885,842 - 29,886,943)(30,023,934 - 30,025,049)
sequence
gaattctgtccttcatcgttttatgaagagggtgatatgaatctgactaa
gagttctacacacactgtgagactggaacccagaacttcgtacacatcag
gcaattgccatatgctactgagccatgccctgagcccttcactgggggat
tctaggcaggggctctactattgagccacacccccagtccctcactgggg
ggattctaggcaggggctctaccactgagccacgcccccagcccctcact
gggggattctaggcaggggctctaccactgagccacgcccccagcccctc
actggaggattctaggcaggggctctaccactgggccacgcccccagccc
ctcactggaggattctaggcaggggctctactactgagccacgcccccag
tccctcactggaggattctaggcaggggctctaatactgagccatgcccc
cagcccctcaatgggagattctaggcagggcctctaccactgagccacgc
cccccagcccctcactgggggattctaggcaggggctctaccactgagcc
acgcccccagcccctcactggaggattctaggcaggggctctaccaccaa
gccacacccccagtctctcactggggaattctaggcaggggctctaatac
tgagccacgcccccagcccctcaatgggagattctaggcagggcctctac
cactgagccacgcccccagtctctaaattccttgcttgaagtcctgcgct
gacttcccttactgatggactctgatgtagaaatacaagctgcaataaag
ccttttctccccaagctgctttcagtcagtgttttatcatagcaatagaa
gccaagacaatttttctttaaatgtttagaggaaagaaaacccttgcaga
gctggtggtacctggatggtgtccacaggacagggtacaaagtccagatg
tgagaggcagcgactgggcccaccaggtgggggcccccgaggccccttcc
tgcgatactcttgatggttggaagatgagcgctccgagggagcacagctc
atgccatgagcatagcaagttgggggcagaccttaattcaccat
gaattccaagtgccccccaggtgcatcacctgcatggtcccttttcatcc
tctgcccaagatcaagggccaccatgctgagaatcgaattctaacacctc
ctcagccctgtcagcacccctggccccaaggtctctcaggtcccaacgta
gacaaaccccttgccttaacacacagtactatcaacctagaaccatcctc
ctccaggagcctgctgcgccacactagggactctgctcaaatgttctccc
tcactgtcgcttctcataatggccaggctcctgatttccctcctcagcat
caactcaattgtgtatcttgttggcacagcctttctctccaggaatccct
taggtctttcatcattaggcatgccctcttcaaggactcaaggatacttc
cagtcaacaactgagttccacatctccatcccagccccaacctatctgcc
tgtgcactctacatcatctgtccagcactctattaaaaggaactaactca
tctttgtgtgtgtgtgtgtgtccgtccaccatagatccatctcaggtagt
caggcttggtggcaagtgcccttactggagccatctctgggaatccaccc
ctgacttctcacactgtttactttaaacacatgttgcccaggcaggcatt
caaagtcgactcccaagtgctagggttacaggtgtgcaccatgaaccctc
ccccatgcttctatcacagcagttccattgctctgtactggcagctttat
gacaggaataaatgctagctggtcacatatcacaggccggccagacacta
aggagtgaaggggtaaatggagcctccctcaaaccctagtcacaatcagg
actacacacacacacacacacacacacacacacacaccacacacactggg
ttcttactactctagttgaccgacaagtttccttccttggaaagtgtcta
tcttcctcctgaactctaggctgtaagaaaagcaaggaccagggctttgg
tggttactagtgtgtacccaaattccagcccagggcctggcaacagggtt
cacagagcaagttatgttagatgaataaatgaaaccaaacaggacataga
tatgagagaaccaagaaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29885842_29886943
seq2: B6Ng01-227A08.b_46_1139

seq1  GAATTCTGTCCTTCATCGTTTTATGAAGAGGGTGATATGAATCTGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTTCATCGTTTTATGAAGAGGGTGATATGAATCTGACTAA  50

seq1  GAGTTCTACACACACTGTGAGACTGGAACCCAGAACTTCGTACACATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTACACACACTGTGAGACTGGAACCCAGAACTTCGTACACATCAG  100

seq1  GCAATTGCCATATGCTACTGAGCCATGCCCTGAGCCCTTCACTGGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCCATATGCTACTGAGCCATGCCCTGAGCCCTTCACTGGGGGAT  150

seq1  TCTAGGCAGGGGCTCTACTATTGAGCCACACCCCCAGTCCCTCACTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAGGGGCTCTACTATTGAGCCACACCCCCAGTCCCTCACTGGGG  200

seq1  GGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTCACT  250

seq1  GGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTC  300

seq1  ACTGGAGGATTCTAGGCAGGGGCTCTACCACTGGGCCACGCCCCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGATTCTAGGCAGGGGCTCTACCACTGGGCCACGCCCCCAGCCC  350

seq1  CTCACTGGAGGATTCTAGGCAGGGGCTCTACTACTGAGCCACGCCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGAGGATTCTAGGCAGGGGCTCTACTACTGAGCCACGCCCCCAG  400

seq1  TCCCTCACTGGAGGATTCTAGGCAGGGGCTCTAATACTGAGCCATGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACTGGAGGATTCTAGGCAGGGGCTCTAATACTGAGCCATGCCCC  450

seq1  CAGCCCCTCAATGGGAGATTCTAGGCAGGGCCTCTACCACTGAGCCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTCAATGGGAGATTCTAGGCAGGGCCTCTACCACTGAGCCACGC  500

seq1  CCCCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCC  550

seq1  ACGCCCCCAGCCCCTCACTGGAGGATTCTAGGCAGGGGCTCTACCACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCCAGCCCCTCACTGGAGGATTCTAGGCAGGGGCTCTACCACCAA  600

seq1  GCCACACCCCCAGTCTCTCACTGGGGAATTCTAGGCAGGGGCTCTAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCCCAGTCTCTCACTGGGGAATTCTAGGCAGGGGCTCTAATAC  650

seq1  TGAGCCACGCCCCCAGCCCCTCAATGGGAGATTCTAGGCAGGGCCTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACGCCCCCAGCCCCTCAATGGGAGATTCTAGGCAGGGCCTCTAC  700

seq1  CACTGAGCCACGCCCCCAGTCTCTAAATTCCTTGCTTGAAGTCCTGCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCACGCCCCCAGTCTCTAAATTCCTTGCTTGAAGTCCTGCGCT  750

seq1  GACTTCCCTTACTGATGGACTCTGATGTAGAAATACAAGCTGCAATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCTTACTGATGGACTCTGATGTAGAAATACAAGCTGCAATAAAG  800

seq1  CCTTTTCTCCCCAAGCTGCTTTCAGTCAGTGTTTTATCATAGCAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCCCCAAGCTGCTTTCAGTCAGTGTTTTATCATAGCAATAGAA  850

seq1  GCCAAGACAATTTTTCTTTAAATGTTTAGAGGAAAGAAAACCCTTGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACAATTTTTCTTTAAATGTTTAGAGGAAAGAAAACCCTTGCAGA  900

seq1  GCTGGTGGTACCTGGATGGTGTCCACAGGACAGGGTACAAAGTCCAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGTACCTGGATGGTGTCCACAGGACAGGGTACAAAGTCCAGATG  950

seq1  TGAGAGGCAGCGACTGGGGCCCACCAGGT-GGGGCCCCCGAGGCCCCTCC  999
      ||||||||||||||| ||||||||||||| |||||||||||||||||| |
seq2  TGAGAGGCAGCGACT-GGGCCCACCAGGTGGGGGCCCCCGAGGCCCCTTC  999

seq1  CTGCGATACTCTTTGATGGGTTGGAGATGGAGCCGCTCCCGAGGGAGCAC  1049
      ||||||||||| ||||||| | | |||| ||| |||| ||||||||||||
seq2  CTGCGATACTC-TTGATGGTTGGAAGAT-GAG-CGCT-CCGAGGGAGCAC  1045

seq1  AGCTTCATGGCATGGAGCATAGCCAGGTGGGGGCAGGAACTTAAATTCAC  1099
      ||| ||||| ||| ||||||||| || |||||||||  || | |||||||
seq2  AGC-TCATGCCAT-GAGCATAGCAAGTTGGGGGCAG--ACCTTAATTCAC  1091

seq1  CAT  1102
      |||
seq2  CAT  1094

seq1: chr7_30023934_30025049
seq2: B6Ng01-227A08.g_67_1188 (reverse)

seq1  ATTCC-TCTTGG-TCTCTCAATATCTATGTCCTGTTT-GTTTCATTTATT  47
      ||||| |||||| |||||| ||||||||||||||||| ||||||||||||
seq2  ATTCCTTCTTGGTTCTCTC-ATATCTATGTCCTGTTTGGTTTCATTTATT  49

seq1  CATCTAACATAACTTGCTCCTGTGAACCCTG-TGCCAGGCCCTGGGCTGG  96
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CATCTAACATAACTTGCT-CTGTGAACCCTGTTGCCAGGCCCTGGGCTGG  98

seq1  AATTTGGGTACACACTAGTAACCACCAAAGCCCTGGTCCTTGC-TTTCTT  145
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTGGGTACACACTAGTAACCACCAAAGCCCTGGTCCTTGCTTTTCTT  148

seq1  ACAG-CTAGAGTTCAGGAGGAAGATAGACACTTTCCAAGGAAGGAAACTT  194
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGAGTTCAGGAGGAAGATAGACACTTTCCAAGGAAGGAAACTT  198

seq1  GTCGGTCAACTAGAGTAGTAAGAA-CCAGTGTGTGTGGTGTGTGTGTGTG  243
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCGGTCAACTAGAGTAGTAAGAACCCAGTGTGTGTGGTGTGTGTGTGTG  248

seq1  TGTGTGTGTGTGTGTGTGTGTAGTCCTGATTGTGACTAGGGTTTGA-GGA  292
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGTGTGTGTGTGTGTGTGTAGTCCTGATTGTGACTAGGGTTTGAGGGA  298

seq1  GGCTCCATTTACCCCTTCACTCCTTAGTGTCTGGCCGGCCTGTGATATGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATTTACCCCTTCACTCCTTAGTGTCTGGCCGGCCTGTGATATGT  348

seq1  GACCAGCTAGCATTTATTCCTGTCATAAAGCTGCCAGTACAGAGCAATGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTAGCATTTATTCCTGTCATAAAGCTGCCAGTACAGAGCAATGG  398

seq1  AACTGCTGTGATAGAAGCATGGGGGAGGGTTCATGGTGCACACCTGTAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTGATAGAAGCATGGGGGAGGGTTCATGGTGCACACCTGTAAC  448

seq1  CCTAGCACTTGGGAGTCGACTTTGAATGCCTGCCTGGGCAACATGTGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTTGGGAGTCGACTTTGAATGCCTGCCTGGGCAACATGTGTTT  498

seq1  AAAGTAAACAGTGTGAGAAGTCAGGGGTGGATTCCCAGAGATGGCTCCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACAGTGTGAGAAGTCAGGGGTGGATTCCCAGAGATGGCTCCAG  548

seq1  TAAGGGCACTTGCCACCAAGCCTGACTACCTGAGATGGATCTATGGTGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCACTTGCCACCAAGCCTGACTACCTGAGATGGATCTATGGTGGA  598

seq1  CGGACACACACACACACACAAAGATGAGTTAGTTCCTTTTAATAGAGTGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACACACACACACACAAAGATGAGTTAGTTCCTTTTAATAGAGTGC  648

seq1  TGGACAGATGATGTAGAGTGCACAGGCAGATAGGTTGGGGCTGGGATGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGATGATGTAGAGTGCACAGGCAGATAGGTTGGGGCTGGGATGGA  698

seq1  GATGTGGAACTCAGTTGTTGACTGGAAGTATCCTTGAGTCCTTGAAGAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAACTCAGTTGTTGACTGGAAGTATCCTTGAGTCCTTGAAGAGG  748

seq1  GCATGCCTAATGATGAAAGACCTAAGGGATTCCTGGAGAGAAAGGCTGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTAATGATGAAAGACCTAAGGGATTCCTGGAGAGAAAGGCTGTG  798

seq1  CCAACAAGATACACAATTGAGTTGATGCTGAGGAGGGAAATCAGGAGCCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGATACACAATTGAGTTGATGCTGAGGAGGGAAATCAGGAGCCT  848

seq1  GGCCATTATGAGAAGCGACAGTGAGGGAGAACATTTGAGCAGAGTCCCTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTATGAGAAGCGACAGTGAGGGAGAACATTTGAGCAGAGTCCCTA  898

seq1  GTGTGGCGCAGCAGGCTCCTGGAGGAGGATGGTTCTAGGTTGATAGTACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCGCAGCAGGCTCCTGGAGGAGGATGGTTCTAGGTTGATAGTACT  948

seq1  GTGTGTTAAGGCAAGGGGTTTGTCTACGTTGGGACCTGAGAGACCTTGGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTAAGGCAAGGGGTTTGTCTACGTTGGGACCTGAGAGACCTTGGG  998

seq1  GCCAGGGGTGCTGACAGGGCTGAGGAGGTGTTAGAATTCGATTCTCAGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGTGCTGACAGGGCTGAGGAGGTGTTAGAATTCGATTCTCAGCA  1048

seq1  TGGTGGCCCTTGATCTTGGGCAGAGGATGAAAAGGGACCATGCAGGTGAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCCTTGATCTTGGGCAGAGGATGAAAAGGGACCATGCAGGTGAT  1098

seq1  GCACCTGGGGGGCACTTGGAATTC  1116
      ||||||||||||||||||||||||
seq2  GCACCTGGGGGGCACTTGGAATTC  1122