BAC Information

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BAC

Clone NameB6Ng01-227B07
Chromosome3 (Build37)7 (Build37)
Map Location 153,675,058 - 153,675,28720,155,102 - 20,155,869
singlet/doubletsingletsinglet
Overlap geneSlc44a5
Upstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm
Downstream geneLOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227B07.bB6Ng01-227B07.g
ACCGA040843GA040844
length947768
definitionB6Ng01-227B07.b B6Ng01-227B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,675,058 - 153,675,287)(20,155,102 - 20,155,869)
sequence
gaattccagaccagcctggtctacagagtgagttccaggacagccaggat
agagaaaccctgtctcaaaaaacaaaacaacaacaaaaaaattgtaggga
aactgctaattaaggctgaagtccaccataacaggatagcctagcctgtg
ggcttggacacagtatgggagaccctcttccttagccaatctccttctct
gaccttgcctggggaatttttttttttttttttttttttatgtaaaagca
tgaggtagtttaatgaagagctccaggcctacacatatctcccgcaggag
acagaggtgttgaccacatggtggagccataatggcggagctcccgttca
aatcttatctcacacaggagacagtggtttcgaccacgaggcttggaagc
taagggtttttatagaaaaggggtggggctgggggaggaattggcgcggt
ttcacatgattggtccatttaaacatcaacagactgtcagaagggctgga
gatagggaggcactaggccagtcaggacatgtaacaatgggcctgcccct
tgcctggggaattctaagcccccatagtctcctccacctgaagaatgtca
catggccccaattagattacaggatcaatttcctttttccggaccaaacc
tgttcagactgcactgagattcctgaaatgcttccccatgctaatgaggc
attttagaatcctaagccccaagccagtgatctctgcccatcctggatgt
ccctgccctcagtcccccaaaacttttaagcccttcagtcaccctaagga
aagttattctgcccactgacagcagggtctgggtgtggtctttcacctta
caactcacaggggttttgaaacccaccccacccccaagcccactcacatc
tctacttcctttgcccttgtgcattgcatcacaatttcacaggggtg
gaattccaagaaagctctgaaattccatggaagttccacctcatctagct
ttgtctttatccttgctctgccatcccaaacacaggcacctgcacagcag
acctgctggacgaccttgacattacagcccctagggaatacaggagcagt
tatccagacaggtctggagagaaagaggcgagaggagagtcgaagtcttg
gaagagggagcagtaacataggacagtggtttccagaagggcttgggaac
agttccaggtcagtcacaccacagtgcagtcctggatgaaataaactgag
ccatggcagagaacacacctacagggaggtttaggcatgaagactggagc
ttgaggcctgtctgggtagacttccaggcatggcaataggttagagtgag
gaggctgatcagctaacatggagcctcatcacccaggacttgagttgtct
ccactctgagagatgttggtgcccacacactgctcatgagctatccatcc
ccaggaaccccgtgcttgctgtccagagcatagacttgtgggaatgaggg
agggaccgggagtcagaggtccctgcatcccctgcatatgctggcccctg
tgagaggattagtgctgtgtggggcatgcagagcactcaacaagctgtac
aggtcgaataagaagtcttcaaggcaggctccaaggccctgcaacagatg
gggaagcctaagcctatggggactaaaggctgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153675058_153675287
seq2: B6Ng01-227B07.b_55_377 (reverse)

seq1  CATTATGGATGGTTGTGAGCCACCATGTGGT----------------TGC  34
      |||||||| |         ||||||||||||                |||
seq2  CATTATGGCT---------CCACCATGTGGTCAACACCTCTGTCTCCTGC  41

seq1  ------------TATGACTTGAACTC------------------------  48
                  || | || || |||                        
seq2  GGGAGATATGTGTAGGCCTGGAGCTCTTCATTAAACTACCTCATGCTTTT  91

seq1  ------------------------------------------------AG  50
                                                      ||
seq2  ACATAAAAAAAAAAAAAAAAAAAAAAATTCCCCAGGCAAGGTCAGAGAAG  141

seq1  GA-----CCTTCGGAAGAG-------CATTCAGTTCTCTCTCTCTCACTC  88
      ||      ||  |||||||       ||| | ||   |   | | ||  |
seq2  GAGATTGGCTAAGGAAGAGGGTCTCCCATACTGTGTCCAAGCCCACAGGC  191

seq1  T---CT---CTCTTTTGGT----TTTTGGTTTTTTGAGACAGGGTTTCTC  128
      |   ||   || || ||||    ||  |  ||  | || ||  ||||| |
seq2  TAGGCTATCCTGTTATGGTGGACTTCAGCCTTAATTAG-CA--GTTTCCC  238

seq1  TAGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCTTGTTTTTTGAGACAGG  178
      ||   || |||  |||         |||||   |||||||||||||||||
seq2  TACAATTTTTTTGTTG---------TTGTT---TTGTTTTTTGAGACAGG  276

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGC  228
      |||||||| |     |||||||||| ||||||||||||||||||||||||
seq2  GTTTCTCTAT-----CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  321

seq1  TG  230
      ||
seq2  TG  323

seq1: chr7_20155102_20155869
seq2: B6Ng01-227B07.g_67_834

seq1  GAATTCCAAGAAAGCTCTGAAATTCCATGGAAGTTCCACCTCATCTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAAGCTCTGAAATTCCATGGAAGTTCCACCTCATCTAGCT  50

seq1  TTGTCTTTATCCTTGCTCTGCCATCCCAAACACAGGCACCTGCACAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTATCCTTGCTCTGCCATCCCAAACACAGGCACCTGCACAGCAG  100

seq1  ACCTGCTGGACGACCTTGACATTACAGCCCCTAGGGAATACAGGAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGACGACCTTGACATTACAGCCCCTAGGGAATACAGGAGCAGT  150

seq1  TATCCAGACAGGTCTGGAGAGAAAGAGGCGAGAGGAGAGTCGAAGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGACAGGTCTGGAGAGAAAGAGGCGAGAGGAGAGTCGAAGTCTTG  200

seq1  GAAGAGGGAGCAGTAACATAGGACAGTGGTTTCCAGAAGGGCTTGGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGAGCAGTAACATAGGACAGTGGTTTCCAGAAGGGCTTGGGAAC  250

seq1  AGTTCCAGGTCAGTCACACCACAGTGCAGTCCTGGATGAAATAAACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGTCAGTCACACCACAGTGCAGTCCTGGATGAAATAAACTGAG  300

seq1  CCATGGCAGAGAACACACCTACAGGGAGGTTTAGGCATGAAGACTGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAGAGAACACACCTACAGGGAGGTTTAGGCATGAAGACTGGAGC  350

seq1  TTGAGGCCTGTCTGGGTAGACTTCCAGGCATGGCAATAGGTTAGAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCTGTCTGGGTAGACTTCCAGGCATGGCAATAGGTTAGAGTGAG  400

seq1  GAGGCTGATCAGCTAACATGGAGCCTCATCACCCAGGACTTGAGTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGATCAGCTAACATGGAGCCTCATCACCCAGGACTTGAGTTGTCT  450

seq1  CCACTCTGAGAGATGTTGGTGCCCACACACTGCTCATGAGCTATCCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGAGAGATGTTGGTGCCCACACACTGCTCATGAGCTATCCATCC  500

seq1  CCAGGAACCCCGTGCTTGCTGTCCAGAGCATAGACTTGTGGGAATGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACCCCGTGCTTGCTGTCCAGAGCATAGACTTGTGGGAATGAGGG  550

seq1  AGGGACCGGGAGTCAGAGGTCCCTGCATCCCCTGCATATGCTGGCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCGGGAGTCAGAGGTCCCTGCATCCCCTGCATATGCTGGCCCCTG  600

seq1  TGAGAGGATTAGTGCTGTGTGGGGCATGCAGAGCACTCAACAAGCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGATTAGTGCTGTGTGGGGCATGCAGAGCACTCAACAAGCTGTAC  650

seq1  AGGTCGAATAAGAAGTCTTCAAGGCAGGCTCCAAGGCCCTGCAACAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGAATAAGAAGTCTTCAAGGCAGGCTCCAAGGCCCTGCAACAGATG  700

seq1  GGGAAGCCTAAGCCTATGGGGACTAAAGGCTGTGTGTGTGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCTAAGCCTATGGGGACTAAAGGCTGTGTGTGTGTGTGTGTGTG  750

seq1  TGTGTGTGTGTGTGAGTG  768
      ||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGTG  768