BAC Information

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BAC

Clone NameB6Ng01-227E04
Chromosome7 (Build37)
Map Location 53,657,887 - 53,832,580
singlet/doubletdoublet
Overlap geneKcnc1, Sergef
Upstream geneKcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1
Downstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E04.bB6Ng01-227E04.g
ACCGA040976GA040977
length9911,107
definitionB6Ng01-227E04.b B6Ng01-227E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,831,607 - 53,832,580)(53,657,887 - 53,658,993)
sequence
gaattcctaggtggtgtgctggtgctgatagtgacaagcaagcccacacg
tgctgggtgaccgaccaggtactagacttcccagagatcaaaatgaagaa
gagtgagagaggggagcagagatggcgaaatgcacagacctgggtgggaa
ggaagatggatgatgctctgtgtagcttgtccaacctttttcctgaaatg
acttaaaaatctaaaaagggggctggagagttggctcagtggtgaagact
gcttcctactctgctcttcatctcccacactgggtagtcctgaccttctg
taactccaactctagggctctgatgccctctgccagtctctgtgggtggc
ccatacacacacacacacacacatacacacacacaaatcttttgaaatct
ttacaaaataattaatttcccttgaagggcatggtggcacatacctgtaa
ccccagcactcaggagcctgaatcaggaggatgtctgagttcaaggtcat
cttgatctatagagtaagtcccaggacagctaaggctgcatagaaaaacc
aataacaacaacaataaatttttataaagaactctttattgttccactga
taaatttgatgaaatatttaaggaaacagatagcaccaatttgatatcaa
tcttttcagaaaatagaggacactttctataatacttaatggaattagtg
taattctgatatgaagccccaatgaagatattaccaaaaagagaaaatta
caatatccctcataagcataaacagaaagtctttaacaaaatactaaaaa
tagagctgagggagggatagctcggtggtattccatttccacagacagtc
acctgccccctctcacacacagacacacagacacacagacacacacacac
agatacacatacacatagacacatgcagacacacatagacatatacagac
acatagggacacacacactcagactcggaccttataccctg
gaattctttaccaagagtcctccaatggtgttttgttttgttttgttttg
ttttgttttgttttgttttgttttgttttgattgtaccctcaagcccccg
aggctcttttggtaaagaaaaccacagaccaagtatctggtaggtaagag
gtcttcagtcccatcactgaggaagagttggctgggaggactgaccatag
agttcacagagagaatgtctgagatgatcgctggtagtcacaacacacag
gaaacaggaaacgcaggttaccattgtggcttgtcttattgttttgctgg
tatttctgctgtggtggctttcttattgtcctacttcacaaccagctctg
aacttcaccctcccctctatcatcatgcctgccattgtgcttcaaagcac
catggtcccttcaggcccgcctctccagcactctgactgtttccagctct
actcccaggtccttccagtccatctttttttttttttctatttggcaagc
acaagggccttttcaactgaaaaactggtcaggtcagcaaagcctgtggg
acttcccaggttcatgttggggcctcttgggtccagccggattccagtgt
gtgattgtctggctttagtcaatgctcgcttaaatgatcactggcctggc
ttagttgcctatagttgctaggtcatggccagttccctctggagggctct
ttctgcctagctcactgcccctcctttattctttacatcaacccagaaaa
cagatctgatctgtagcagtcttcttcctggcccggacagacagcatcaa
ggtttcaggcccagtgttctcctcctcagcacagcaagctgctcagtgac
cagctgctcgttagaagtttttgctcagtttagtttcatctctgtcaggt
tctaagcttcccctgcactcaatgtagtctgaggttttgtgaagggggag
gttgaggccccagcgaggacagatttctcaaggtcacaggtgagcaggtt
gttctgttctcttctaacctcaagctcagcatggtcttgagttccacttt
ggggtagcttgggagtctggcgcctgaagcacttcagtgtctgggagttt
ggccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53831607_53832580
seq2: B6Ng01-227E04.b_44_1017 (reverse)

seq1  GTCTGTGTGTGTGTGTCCCTATGTGTCTGTATATGTCTATGTGTGTCTGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTGTGTGTGTCCCTATGTGTCTGTATATGTCTATGTGTGTCTGC  50

seq1  ATGTGTCTATGTGTATGTGTATCTGTGTGTGTGTGTCTGTGTGTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTATGTGTATGTGTATCTGTGTGTGTGTGTCTGTGTGTCTGTGT  100

seq1  GTCTGTGTGTGAGAGGGGGCAGGTGACTGTCTGTGGAAATGGAATACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGTGAGAGGGGGCAGGTGACTGTCTGTGGAAATGGAATACCAC  150

seq1  CGAGCTATCCCTCCCTCAGCTCTATTTTTAGTATTTTGTTAAAGACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTATCCCTCCCTCAGCTCTATTTTTAGTATTTTGTTAAAGACTTTC  200

seq1  TGTTTATGCTTATGAGGGATATTGTAATTTTCTCTTTTTGGTAATATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGCTTATGAGGGATATTGTAATTTTCTCTTTTTGGTAATATCTT  250

seq1  CATTGGGGCTTCATATCAGAATTACACTAATTCCATTAAGTATTATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGCTTCATATCAGAATTACACTAATTCCATTAAGTATTATAGAA  300

seq1  AGTGTCCTCTATTTTCTGAAAAGATTGATATCAAATTGGTGCTATCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCTATTTTCTGAAAAGATTGATATCAAATTGGTGCTATCTGTT  350

seq1  TCCTTAAATATTTCATCAAATTTATCAGTGGAACAATAAAGAGTTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATATTTCATCAAATTTATCAGTGGAACAATAAAGAGTTCTTTA  400

seq1  TAAAAATTTATTGTTGTTGTTATTGGTTTTTCTATGCAGCCTTAGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTATTGTTGTTGTTATTGGTTTTTCTATGCAGCCTTAGCTGTC  450

seq1  CTGGGACTTACTCTATAGATCAAGATGACCTTGAACTCAGACATCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTTACTCTATAGATCAAGATGACCTTGAACTCAGACATCCTCCT  500

seq1  GATTCAGGCTCCTGAGTGCTGGGGTTACAGGTATGTGCCACCATGCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGCTCCTGAGTGCTGGGGTTACAGGTATGTGCCACCATGCCCTT  550

seq1  CAAGGGAAATTAATTATTTTGTAAAGATTTCAAAAGATTTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAATTAATTATTTTGTAAAGATTTCAAAAGATTTGTGTGTGTGT  600

seq1  ATGTGTGTGTGTGTGTGTGTATGGGCCACCCACAGAGACTGGCAGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTATGGGCCACCCACAGAGACTGGCAGAGGGC  650

seq1  ATCAGAGCCCTAGAGTTGGAGTTACAGAAGGTCAGGACTACCCAGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCCCTAGAGTTGGAGTTACAGAAGGTCAGGACTACCCAGTGTGG  700

seq1  GAGATGAAGAGCAGAGTAGGAAGCAGTCTTCACCACTGAGCCAACTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAGAGCAGAGTAGGAAGCAGTCTTCACCACTGAGCCAACTCTCC  750

seq1  AGCCCCCTTTTTAGATTTTTAAGTCATTTCAGGAAAAAGGTTGGACAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTTTTTAGATTTTTAAGTCATTTCAGGAAAAAGGTTGGACAAGC  800

seq1  TACACAGAGCATCATCCATCTTCCTTCCCACCCAGGTCTGTGCATTTCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGCATCATCCATCTTCCTTCCCACCCAGGTCTGTGCATTTCGC  850

seq1  CATCTCTGCTCCCCTCTCTCACTCTTCTTCATTTTGATCTCTGGGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGCTCCCCTCTCTCACTCTTCTTCATTTTGATCTCTGGGAAGTC  900

seq1  TAGTACCTGGTCGGTCACCCAGCACGTGTGGGCTTGCTTGTCACTATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTGGTCGGTCACCCAGCACGTGTGGGCTTGCTTGTCACTATCAG  950

seq1  CACCAGCACACCACCTAGGAATTC  974
      ||||||||||||||||||||||||
seq2  CACCAGCACACCACCTAGGAATTC  974

seq1: chr7_53657887_53658993
seq2: B6Ng01-227E04.g_64_1170

seq1  GAATTCTTTACCAAGAGTCCTCCAATGGTGTTTTGTTTTGTTTTGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCAAGAGTCCTCCAATGGTGTTTTGTTTTGTTTTGTTTTG  50

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGATTGTACCCTCAAGCCCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGATTGTACCCTCAAGCCCCCG  100

seq1  AGGCTCTTTTGGTAAAGAAAACCACAGACCAAGTATCTGGTAGGTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTTGGTAAAGAAAACCACAGACCAAGTATCTGGTAGGTAAGAG  150

seq1  GTCTTCAGTCCCATCACTGAGGAAGAGTTGGCTGGGAGGACTGACCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGTCCCATCACTGAGGAAGAGTTGGCTGGGAGGACTGACCATAG  200

seq1  AGTTCACAGAGAGAATGTCTGAGATGATCGCTGGTAGTCACAACACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAGAGAGAATGTCTGAGATGATCGCTGGTAGTCACAACACACAG  250

seq1  GAAACAGGAAACGCAGGTTACCATTGTGGCTTGTCTTATTGTTTTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGAAACGCAGGTTACCATTGTGGCTTGTCTTATTGTTTTGCTGG  300

seq1  TATTTCTGCTGTGGTGGCTTTCTTATTGTCCTACTTCACAACCAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGCTGTGGTGGCTTTCTTATTGTCCTACTTCACAACCAGCTCTG  350

seq1  AACTTCACCCTCCCCTCTATCATCATGCCTGCCATTGTGCTTCAAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACCCTCCCCTCTATCATCATGCCTGCCATTGTGCTTCAAAGCAC  400

seq1  CATGGTCCCTTCAGGCCCGCCTCTCCAGCACTCTGACTGTTTCCAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCCTTCAGGCCCGCCTCTCCAGCACTCTGACTGTTTCCAGCTCT  450

seq1  ACTCCCAGGTCCTTCCAGTCCATCTTTTTTTTTTTTTCTATTTGGCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGGTCCTTCCAGTCCATCTTTTTTTTTTTTTCTATTTGGCAAGC  500

seq1  ACAAGGGCCTTTTCAACTGAAAAACTGGTCAGGTCAGCAAAGCCTGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCCTTTTCAACTGAAAAACTGGTCAGGTCAGCAAAGCCTGTGGG  550

seq1  ACTTCCCAGGTTCATGTTGGGGCCTCTTGGGTCCAGCCGGATTCCAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAGGTTCATGTTGGGGCCTCTTGGGTCCAGCCGGATTCCAGTGT  600

seq1  GTGATTGTCTGGCTTTAGTCAATGCTCGCTTAAATGATCACTGGCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTCTGGCTTTAGTCAATGCTCGCTTAAATGATCACTGGCCTGGC  650

seq1  TTAGTTGCCTATAGTTGCTAGGTCATGGCCAGTTCCCTCTGGAGGGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCCTATAGTTGCTAGGTCATGGCCAGTTCCCTCTGGAGGGCTCT  700

seq1  TTCTGCCTAGCTCACTGCCCCTCCTTTATTCTTTACATCAACCCAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTAGCTCACTGCCCCTCCTTTATTCTTTACATCAACCCAGAAAA  750

seq1  CAGATCTGATCTGTAGCAGTCTTCTTCCTGGCCCGGACAGACAGCATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGATCTGTAGCAGTCTTCTTCCTGGCCCGGACAGACAGCATCAA  800

seq1  GG-TTCAGGCCCAGTGTTCTCCTCCTCAGCACAGCAAGCTGCTCAGTGAC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGGCCCAGTGTTCTCCTCCTCAGCACAGCAAGCTGCTCAGTGAC  850

seq1  CAGCTGCTCGTTAGAAG-TTTTGCTCAGTTTAGTTTCATCTCTGTCAGGT  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCGTTAGAAGTTTTTGCTCAGTTTAGTTTCATCTCTGTCAGGT  900

seq1  TCTAAGCTTCCCCTGCACTCAATGTAGTCTGAGGTTTTGTGAAGGGGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTTCCCCTGCACTCAATGTAGTCTGAGGTTTTGTGAAGGGGGAG  950

seq1  GTTGAGG-CCCAGCGAGGACAGATTTCTCAAGGTCACAGGTGAGCAGGTT  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGCCCCAGCGAGGACAGATTTCTCAAGGTCACAGGTGAGCAGGTT  1000

seq1  G-TCTGTCCTCTCCTAACTCCAAGCTCAGCAGGTCCTTGAGGTCCCACCT  1046
      | ||||| |||| |||||  ||||||||||| |  ||||| || |||| |
seq2  GTTCTGTTCTCTTCTAACCTCAAGCTCAGCATGGTCTTGA-GTTCCACTT  1049

seq1  TGGGGAAGCTTTGGAGTCTGGCGCCCTGAGGGCAACTTCAGTGTCTGGAG  1096
      ||||| ||||| ||||||||||| ||||| |   ||||||||||||||  
seq2  TGGGGTAGCTTGGGAGTCTGGCG-CCTGAAG--CACTTCAGTGTCTGGGA  1096

seq1  GTTTGGCCTTG  1107
      |||||||||||
seq2  GTTTGGCCTTG  1107