BAC Information

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BAC

Clone NameB6Ng01-227E22
Chromosome7 (Build37)
Map Location 64,256,627 - 64,257,740
singlet/doubletsinglet
Overlap geneGabrg3
Upstream geneNipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E22.bB6Ng01-227E22.g
ACCGA041010GA041011
length1,2301,110
definitionB6Ng01-227E22.b B6Ng01-227E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgtcaggttgttttaacttgtgtttacttctaaaactaataca
tgcagaattaactacaggaaatgaaaattttaagatgtaatttaagccat
cttatacagaagaataacaagaaaccaggtgagatacattcaccaagtta
cagtgacacaatacaaaaggaatgtagacatcaaaagaaggtgggggcta
ctaagaagggagccaggtataaagctagtctattgttaagcccaccacca
ggggttctgctctagcagaccttctcatgagtactgcaataccacaaccc
ccctatttcctgggccctgataatttcttgagtgagtgtaagttttaagt
atctgtggagaatctccatttgtcagaagaatttaccaacttgcttctaa
tatgcaatgtagcctgtactgaagatttctatctcagtgggattcccagg
ctctttcatggcattcccctatttgggtgagactggctactgtccttagt
aaacactctgcagaccagccctgagctgctggctccgtcttttgtaatgc
ttaattagttactgaataggtaacttccttattgcactcctaccagattc
caagctcctcggcttctggaacattggaacactggtgggaggctttagct
atgtcagaatccaatcttaaaagacacttataataaagtaatactaaaag
agagcacatggatccatacactagactaatttcgggggatagagtgtgag
tataccggttaatgagaacgccaaagctccaggaggtgagttccttttga
aactctatgcatcgtgagtgctcccaggctttctcagcctatcaagcaga
cttcactggagtgtgcatgacacccatctgaccagtatcaaatgttctag
caaagcaaagatttcactttagggattctggtctcttgctaccatggaca
ttcttcaccctcagctgatcagtactactgtaactttcattctgtaaatg
taacttttattcttcttgatgtattgtcatctggaggttttcagcctccg
tttgctaacttagacctcatttttttttaatgcttttagcctccaataca
tctatctagggcctaaatgtttttccagcaaggtttctggagaactgatt
cgattaggccttaacccgttcaggtctttttgactctgacgaactcctcc
ttcgaaacttaagtgattcaatattgggtc
gaattctctctcctccatgccacagagcccggaaagcaggatgagatcac
ctacttccaaaatcaaagactaggaactcggtatctggtgccagctttag
cctatagcactatgtcaactgccctagtcaacctccacacagcagacagg
cccattagaaaactccgaagctaaatgctctagagaaaagggaaaggacg
tgacaaaagcaaatttcaaacctgaccaaagctttgtgacatttatgctc
aagagccgtgtctgtagttcaggtttttttattttaaaattcacctgttc
ttatgctgagccttgcaatgcctaaacactcactctagtagttcatgaat
gtcttcctgtcacgtacactgccagaggcatgcctggtctgtgaacgtta
gtgcatacacgcactataatgatcacttcagacttgggtgattaagtaaa
ggtatgttgtaaccccgcggtagctgttattaaaatactcataacatttt
ctatattttgccttggcctttattaatccctcccactggctttgctcaca
ggaattaattacaactatgagataaatcaacatgtgcagttacatgaccc
tatgttgagctgtaagaggcagcctatggagctggtgaatgcagtagctg
aagagttctacatccgggtttgtagacggcaggaagagagagagagacat
tgggcctgctgaaggattttgaaacctcaaagcccaccaccagtgacaca
tttcttccgacaaagccacatctcctaatcctttcaataccgtcactccc
taaacattcaaaatgttagggatatgaacctaaggagatcactcttattc
accatcatagataccgtgaccaagtcaactcgtttaaaagaaagctttta
attggtaagctagattacactttttagggttagtacattattatggtggg
gaagcatggcagcaggtaaggcaggcatggtgctaagaagcagttgggag
ctttgcatcccaatctcagagagaaggcagacagaagaagaaactgggac
ctgtgagcgctttgaatctcaaccacaccaatggaatatactttctccat
cagataccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64256627_64257740
seq2: B6Ng01-227E22.g_69_1178

seq1  GAATTCTCTCTCCTCCATGCCACAGAGCCCGGAAAGCAGGATGAGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCTCCATGCCACAGAGCCCGGAAAGCAGGATGAGATCAC  50

seq1  CTACTTCCAAAATCAAAGACTAGGAACTCGGTATCTGGTGCCAGCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAAAATCAAAGACTAGGAACTCGGTATCTGGTGCCAGCTTTAG  100

seq1  CCTATAGCACTATGTCAACTGCCCTAGTCAACCTCCACACAGCAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCACTATGTCAACTGCCCTAGTCAACCTCCACACAGCAGACAGG  150

seq1  CCCATTAGAAAACTCCGAAGCTAAATGCTCTAGAGAAAAGGGAAAGGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGAAAACTCCGAAGCTAAATGCTCTAGAGAAAAGGGAAAGGACG  200

seq1  TGACAAAAGCAAATTTCAAACCTGACCAAAGCTTTGTGACATTTATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGCAAATTTCAAACCTGACCAAAGCTTTGTGACATTTATGCTC  250

seq1  AAGAGCCGTGTCTGTAGTTCAGGTTTTTTTATTTTAAAATTCACCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCGTGTCTGTAGTTCAGGTTTTTTTATTTTAAAATTCACCTGTTC  300

seq1  TTATGCTGAGCCTTGCAATGCCTAAACACTCACTCTAGTAGTTCATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGAGCCTTGCAATGCCTAAACACTCACTCTAGTAGTTCATGAAT  350

seq1  GTCTTCCTGTCACGTACACTGCCAGAGGCATGCCTGGTCTGTGAACGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTGTCACGTACACTGCCAGAGGCATGCCTGGTCTGTGAACGTTA  400

seq1  GTGCATACACGCACTATAATGATCACTTCAGACTTGGGTGATTAAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACACGCACTATAATGATCACTTCAGACTTGGGTGATTAAGTAAA  450

seq1  GGTATGTTGTAACCCCGCGGTAGCTGTTATTAAAATACTCATAACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTGTAACCCCGCGGTAGCTGTTATTAAAATACTCATAACATTTT  500

seq1  CTATATTTTGCCTTGGCCTTTATTAATCCCTCCCACTGGCTTTGCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTGCCTTGGCCTTTATTAATCCCTCCCACTGGCTTTGCTCACA  550

seq1  GGAATTAATTACAACTATGAGATAAATCAACATGTGCAGTTACATGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAATTACAACTATGAGATAAATCAACATGTGCAGTTACATGACCC  600

seq1  TATGTTGAGCTGTAAGAGGCAGCCTATGGAGCTGGTGAATGCAGTAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAGCTGTAAGAGGCAGCCTATGGAGCTGGTGAATGCAGTAGCTG  650

seq1  AAGAGTTCTACATCCGGGTTTGTAGACGGCAGGAAGAGAGAGAGAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCTACATCCGGGTTTGTAGACGGCAGGAAGAGAGAGAGAGACAT  700

seq1  TGGGCCTGCTGAAGGATTTTGAAACCTCAAAGCCCACCACCAGTGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGCTGAAGGATTTTGAAACCTCAAAGCCCACCACCAGTGACACA  750

seq1  TTTCTTCCGACAAAGCCACATCTCCTAATCCTTTCAAATACCGTCACTCC  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCTTCCGACAAAGCCACATCTCCTAATCCTTTC-AATACCGTCACTCC  799

seq1  CTAAACATTCAAAATGTTAGGGATATGAACCTAAGGAGATCACTCTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTCAAAATGTTAGGGATATGAACCTAAGGAGATCACTCTTATT  849

seq1  CACCATCATAGATACCGTGACCAAGTCAACTCGTTTAAAAGAAAGCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATAGATACCGTGACCAAGTCAACTCGTTTAAAAGAAAGCTTTT  899

seq1  AATTGGTAAGCTAGATTACAC-TTTTAGGGTTAGTACATTATTATGGT-G  948
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AATTGGTAAGCTAGATTACACTTTTTAGGGTTAGTACATTATTATGGTGG  949

seq1  GGAAGCATGGCAGCAGGTAAGGCAGGCATGGTGCTAAGAAGCAGTTGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGGCAGCAGGTAAGGCAGGCATGGTGCTAAGAAGCAGTTGGGA  999

seq1  GCTTTGCATCCCAATCCTCAGAGAGAAGGCAGACAGA--GAGAAACT-GG  1045
      ||||||||||||||| |||||||||||||||||||||   ||||||| ||
seq2  GCTTTGCATCCCAAT-CTCAGAGAGAAGGCAGACAGAAGAAGAAACTGGG  1048

seq1  ACCTGTTGAAGCGCTTTTGAAATCTCAAACCACACCAAATGGATATACTT  1095
      ||||||   ||||||||   |||||| |||||||||||  | ||||||||
seq2  ACCTGT--GAGCGCTTT--GAATCTC-AACCACACCAATGGAATATACTT  1093

seq1  CCTCCATCAAGGATACCCT  1114
       ||||||||  ||||||||
seq2  TCTCCATCA--GATACCCT  1110