BAC Information

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BAC

Clone NameB6Ng01-227P15
Chromosome7 (Build37)
Map Location 15,642,599 - 15,643,767
singlet/doubletsinglet
Overlap geneEG666381
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685
Downstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227P15.bB6Ng01-227P15.g
ACCGA041508GA041509
length1,149980
definitionB6Ng01-227P15.b B6Ng01-227P15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggcatgtgattagtctgttggtgtcagttgccaggtgtgagc
acaatgcctgggattactacaggctgtgtttgttcaggggtgggttgcag
acaagctggttatcagttgttttgtgtgcagttgaacttctgagatgtct
ttaggctgtggtgtcttcagtagagcagacaagatggtgagcagttacct
tgcatgcacaggaactcttgggatgccttcaggctgtgttttttcacgga
aggggcagactagctggtggtctgccttagtagaagttgccaggcagaag
ggcaggatctaggacatttaaacatagggggagaacatccaattgccagc
ccatctggactgaatatctcttattaatactggtgctaaatgcatattta
ttgtaatactgaaaatacttttaagattgggaaacagaggcagttgttca
gaaagaatgagggtcctgatggattcctgctctaaaatgtccacaacaaa
tgctggataggtgtgatgggtaaatgggtgctctctggagcttttctatt
gtgtttccttttaccaggttctccagtacagggacatactccaataagtt
cagaacacacacacatggccgaaggcccctctttgcatccaaaactccaa
gtggctttgaatatacccatagaactcacttcccaaatacctcaagaccc
tgcaaggaacttagcttttcaaatgtgtcagagtcccctagtgactccag
gaagtacaatgcaatcaagtctttcggtccctgaaaggaacctacttcag
caagagtctcaaggaccaacaagacaatcaggtatccaaatgcaaccagg
tgctttaatgggccttggtttaccaactctgagaagactcttggggcatc
caagtcattagatacctttcaagaccctcagtgaattcttgtttccatgt
tcccatagtgtatgccactgtcagataaatatgttaacaaacaactggct
ctatgttcttcaagaaagtttcgaaaagaacacacgtgtactcaaagaac
agcagcttctgcaaaacatttcgatggagtgcagtactcacagaggaatt
tatggagctggactatcagttggttacagaagaatcaaggtagttctct
gaattccactaaaatcgggaacaagtcaaggctgccactctctccatatc
tgttcaatgcattacttgaagttcttagcttgagcaagaagacacttgta
ggaggtaaaggagatacatatgggaaaggagttcgtcaaagtacctttat
ttaaatgatatgacaatgttcagaagtgacttgaaaaattgtgtgctcgc
tttggcagcaatatactaaaattggaaggatacggagaaaattagcatgg
cccctgcacaagaatgacaagcaaattcaaaaaacgttccatatttttaa
gaaactggctacacaaacaagacccaacattttgctgcttacaggaaact
catctcagagaaaaagatagacactacctaagaatgaaaggctggaaaac
aattttccaagcaaatgttatgaagaaacaagctggagtagccattctaa
tatctaacaaaatcgacttcaaacccaaaataatcaaaaaagacaaggag
aggcacttcatactcatcaaattaaaatcctcaaagaggaactctcaatc
ctgaatatctatgctccaaacacaagggcagccacattcattaaagaaac
tttagtaaacctcaaagcacacattgcacctcacacaataatagtgggag
actacaacacaccactttcaccaatggacagatcatggaaacagaaacta
aacagggacacagtgaaactaacagaagtgatgaaacaaatggacttaac
agatatctacagaacattttatcctaaaacaaaaggatataccttcttct
cagcaccccattgtaccttccccaaaattgaccatataattgctcacaaa
acaagcctcaacatatacaaaaatgttgaaattgtcccatgcatgctatc
agatcaccatggactagggctgatcttcaataacaacataaatatgaaaa
gccaacatttaagtgaaactgaacaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15642599_15643767
seq2: B6Ng01-227P15.b_45_1193 (reverse)

seq1  AGAGAAACTAACCTTGATCTCCCTCTT-TGTAACACCAACTGATAGTGCC  49
      |||| |||| ||||||||     |||| ||||  ||||||||||||| ||
seq2  AGAG-AACT-ACCTTGAT-----TCTTCTGTA--ACCAACTGATAGT-CC  40

seq1  AGCTCCATAATTTTCTTCTTGTTTGGGTACTGGCACT-CATCGAAATGTT  98
      ||||||||||     ||| | | || ||||| ||||| |||||||||| |
seq2  AGCTCCATAA----ATTCCTCTGTGAGTACT-GCACTCCATCGAAATG-T  84

seq1  TTTGCAGAAGGCCCTGCTGTTCTTTGGAGTACACCGTGTGTTCTTTTCGA  148
      ||||||||||   |||||||||||| ||||||| ||||||||||||||||
seq2  TTTGCAGAAG---CTGCTGTTCTTT-GAGTACA-CGTGTGTTCTTTTCGA  129

seq1  AACTTTCTTGAAG-ACATAGGGCCAGTTTGTTTGTTAACATATTTATCTG  197
      ||||||||||||| |||||| ||||| |||||||||||||||||||||||
seq2  AACTTTCTTGAAGAACATAGAGCCAG-TTGTTTGTTAACATATTTATCTG  178

seq1  ACAGTGGCATACAACCTATGGGAACATGGAAACAAGAATTCACTGAGGGT  247
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCATACA--CTATGGGAACATGGAAACAAGAATTCACTGAGGGT  226

seq1  CTTG-AAGGTATCTAATGACTTGGATGCCCCAAGAGTCTTCTCAGAGTTG  296
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGGTATCTAATGACTTGGATGCCCCAAGAGTCTTCTCAGAGTTG  276

seq1  GTAAACCAAGGCCCATTAAAGCACCTGGTTGCATTTGGATACCTGATTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAGGCCCATTAAAGCACCTGGTTGCATTTGGATACCTGATTGT  326

seq1  CTTGTTGGTCCTTGAGACTCTTGCTGAAGTAGGTTCCTTTCAGGGACCGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTCCTTGAGACTCTTGCTGAAGTAGGTTCCTTTCAGGGACCGA  376

seq1  AAGACTTGATTGCATTGTACTTCCTGGAGTCACTAGGGGACTCTGACACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGATTGCATTGTACTTCCTGGAGTCACTAGGGGACTCTGACACA  426

seq1  TTTGAAAAGCTAAGTTCCTTGCAGGGTCTTGAGGTATTTGGGAAGTGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGCTAAGTTCCTTGCAGGGTCTTGAGGTATTTGGGAAGTGAGT  476

seq1  TCTATGGGTATATTCAAAGCCACTTGGAGTTTTGGATGCAAAGAGGGGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGTATATTCAAAGCCACTTGGAGTTTTGGATGCAAAGAGGGGCC  526

seq1  TTCGGCCATGTGTGTGTGTTCTGAACTTATTGGAGTATGTCCCTGTACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCCATGTGTGTGTGTTCTGAACTTATTGGAGTATGTCCCTGTACTG  576

seq1  GAGAACCTGGTAAAAGGAAACACAATAGAAAAGCTCCAGAGAGCACCCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGGTAAAAGGAAACACAATAGAAAAGCTCCAGAGAGCACCCAT  626

seq1  TTACCCATCACACCTATCCAGCATTTGTTGTGGACATTTTAGAGCAGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATCACACCTATCCAGCATTTGTTGTGGACATTTTAGAGCAGGAA  676

seq1  TCCATCAGGACCCTCATTCTTTCTGAACAACTGCCTCTGTTTCCCAATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGGACCCTCATTCTTTCTGAACAACTGCCTCTGTTTCCCAATCT  726

seq1  TAAAAGTATTTTCAGTATTACAATAAATATGCATTTAGCACCAGTATTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATTTTCAGTATTACAATAAATATGCATTTAGCACCAGTATTAA  776

seq1  TAAGAGATATTCAGTCCAGATGGGCTGGCAATTGGATGTTCTCCCCCTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATATTCAGTCCAGATGGGCTGGCAATTGGATGTTCTCCCCCTAT  826

seq1  GTTTAAATGTCCTAGATCCTGCCCTTCTGCCTGGCAACTTCTACTAAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATGTCCTAGATCCTGCCCTTCTGCCTGGCAACTTCTACTAAGGC  876

seq1  AGACCACCAGCTAGTCTGCCCCTTCCGTGAAAAAACACAGCCTGAAGGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCAGCTAGTCTGCCCCTTCCGTGAAAAAACACAGCCTGAAGGCA  926

seq1  TCCCAAGAGTTCCTGTGCATGCAAGGTAACTGCTCACCATCTTGTCTGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAGTTCCTGTGCATGCAAGGTAACTGCTCACCATCTTGTCTGCT  976

seq1  CTACTGAAGACACCACAGCCTAAAGACATCTCAGAAGTTCAACTGCACAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAGACACCACAGCCTAAAGACATCTCAGAAGTTCAACTGCACAC  1026

seq1  AAAACAACTGATAACCAGCTTGTCTGCAACCCACCCCTGAACAAACACAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTGATAACCAGCTTGTCTGCAACCCACCCCTGAACAAACACAG  1076

seq1  CCTGTAGTAATCCCAGGCATTGTGCTCACACCTGGCAACTGACACCAACA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTAATCCCAGGCATTGTGCTCACACCTGGCAACTGACACCAACA  1126

seq1  GACTAATCACATGCCAGGAATTC  1169
      |||||||||||||||||||||||
seq2  GACTAATCACATGCCAGGAATTC  1149