BAC Information

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BAC

Clone NameB6Ng01-229J11
Chromosome7 (Build37)
Map Location 4,215,002 - 4,215,551
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
Downstream geneNcr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229J11.bB6Ng01-229J11.g
ACCGA042689GA042690
length1,0241,196
definitionB6Ng01-229J11.b B6Ng01-229J11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcacatggagctcatcaaccagaaggggacagcatgtattcat
attaaaaatgtttcccattgcttctagtcgccatctgcatccggagcttg
ggctgctccacagccctctgtgcacagggcccaccaagagaaagctggtc
tcccaggagtgctctcactcctaggctcagatgtgagaaagccactttct
ctccaataactgtccagggctagacaagcaaggagcatacaggacacagg
aacagtggagtggctgggacaggatccttctggtcaccatctccatccag
agcttgagctgttccagggaactctgtatacaagttcgaccaggagatag
ctggtctcccaaaagtactcacaggcttacaggccgacaggagggacaag
atctagccagagacagcaagaccaactaacaccagagataaacagatgga
caaaggcaagtacaggaaccataccaacagaaaacaaggctacttggcat
catcagaacccagttctgccaccacagcaagtcctggataacccaacact
ctagaaaaaagaaatctggatttaaaatcacatcgcatgatgttgataga
ttttaagaaggacataaataactcccttaaagaaatacgggggttggatg
tggagtcagcggacactccatgcgatctaaggacctctggtgagtggaac
acaacttctgccaggaggcaggtctgaacgccagatatctggacaccttc
cctgcaagaggtgagcttgcctgcagagagtgctctgaccattaaaactc
agagagagctagtctcctaggtctgctgacagaggctaacagaatcagga
gaggaacaagtcgtaaccagagaaaactataacaactaactccagagaat
accagatgggtgaaaggcaaacgtgagaatcttactaacagaaatcaaga
ccactcaccatcatcagaacgcagaactccccacctcacccagtcctggg
caccccaatacacccggaaaagct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccaatcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgttccactat
gttcatagcagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcagctaaaggatggatcacagggcctcc
caatggaggagctagaagaaagtaccaaggagctaaagggaatctgcaac
ctataggtggatcacatatggactacccagtatccggagctctgactcta
gcctgcattatgtattcaaagattgcctagtcgcattccacttggaaagg
agagtccaatgaacctccaacttatattgccccttgatcaggaacgccca
ggtccaaaacggtggactgccggcctaagggcatagctgtgatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4215002_4215551
seq2: B6Ng01-229J11.b_46_595

seq1  ATTCATCACATGGAGCTCATCAACCAGAAGGGGACAGCATGTATTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCACATGGAGCTCATCAACCAGAAGGGGACAGCATGTATTCATAT  50

seq1  TTAAAATGTTTCCTGTTGCTTCTAGTCGCCATCTGCATCCGGAGCTTGGG  100
      | |||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTTTCCCATTGCTTCTAGTCGCCATCTGCATCCGGAGCTTGGG  100

seq1  CTGTTCCACAGCCCTCTGTGCACAGGGCCCACCAAGAGAAAGCTGGTCTC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCACAGCCCTCTGTGCACAGGGCCCACCAAGAGAAAGCTGGTCTC  150

seq1  CCAGGAGTGCTCTCACTCCTAGGCTCAGATGTGAGAAAGCCACTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTGCTCTCACTCCTAGGCTCAGATGTGAGAAAGCCACTTTCTCT  200

seq1  CCAATAACTGTCCAGGGCTAGACAAGCAAGGAGCATACAGGACACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACTGTCCAGGGCTAGACAAGCAAGGAGCATACAGGACACAGGAA  250

seq1  CAGTGAAGTGGCTGGGACAGGATCCTTCTGGTCACAATCTTCACCCAGCT  300
      ||||| ||||||||||||||||||||||||||||| |||| || ||||  
seq2  CAGTGGAGTGGCTGGGACAGGATCCTTCTGGTCACCATCTCCATCCAGAG  300

seq1  CTTGAGCTGTTCCAGGGACCTCTGTATACAAGTTCGACCAGGAGATAGCT  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGAGCTGTTCCAGGGAACTCTGTATACAAGTTCGACCAGGAGATAGCT  350

seq1  GGTCTCCCAAAAGTGCTTACAGGCATATAGGCCGAAATGAGGGACAAGAT  400
      |||||||||||||| || |||||| || ||||||| | ||||||||||||
seq2  GGTCTCCCAAAAGTACTCACAGGCTTACAGGCCGACAGGAGGGACAAGAT  400

seq1  CGAGCCAGAGACAGCAAGACCAACTAACACCAGAGATAAACAGATGGACA  450
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGAGACAGCAAGACCAACTAACACCAGAGATAAACAGATGGACA  450

seq1  AAGGCAAGTACAGGAACCATACCAACAGAAAATAAAACTACTTGGCATCA  500
      |||||||||||||||||||||||||||||||| ||  |||||||||||||
seq2  AAGGCAAGTACAGGAACCATACCAACAGAAAACAAGGCTACTTGGCATCA  500

seq1  TCAGAACCCAGTTCTGCCACCACAGCAAGTCCTGGATAACCCAACACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAGTTCTGCCACCACAGCAAGTCCTGGATAACCCAACACTCT  550