BAC Information

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BAC

Clone NameB6Ng01-231C13
Chromosome7 (Build37)7 (Build37)
Map Location 7,805,494 - 7,806,66510,131,284 - 10,132,407
singlet/doubletsingletsinglet
Overlap geneVmn2r-ps40
Upstream geneUsp29, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
Downstream geneVmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231C13.bB6Ng01-231C13.g
ACCGA043833GA043834
length1,1731,128
definitionB6Ng01-231C13.b B6Ng01-231C13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,805,494 - 7,806,665)(10,131,284 - 10,132,407)
sequence
gaattctttttccattcacattcataacaatctctagactgcctttcttt
aaggaaaaatgttcagaaacttattattttggaaaacatttcctatttct
ttaagtctgggcatctgaaagactctaaacagctatgcaattgaagacat
caaaccttgtccaatagaagaaactttaccttcaagcagtgagaactggc
tcctttcccattgtctattgcctgattatcaacctgctgcaaattcatct
catggagtgcatgggctatggcatgcacagcattgtatatgttatgacta
ctctcactaaaggccatgtcaaacttctgttccattagccaatcaaatga
ggcatcagatgaattgttcttcagtattttacacttagatgctgaggatt
catatttaaagtatttccactctggcattactagatataaatctttgctt
ctgagatggaaccatgtctgtacaaaatctttaaagccagaaatcccacc
atggtggggtagaaaagtaagtgatccatagattgtgccatgagttatgt
ctctcttactggtagggaaattccattgttttgtggtgatccatattctc
tgtaaacctggaggttcccacattctgaagatcaaatcaacgaaatcgat
tgtttcctcataaatgatgataacatttgaggatgacatcacaatttgtt
tgtagtacatttcagttttgtgttcaaatgaaatgtcatcaacagagatc
attttcacaaaggcaaagcaaatttccttgttttccttctgttttttcaa
ctctaaaagaaattggtttccttgatcgtcatctgggatgacaaggccaa
tccagttccagttgaagtaaagtatgaaggagaccattgccaatgctaga
gatgtgtcctttggggccatctgatagagatagggatatgttcatcatca
ctgaagatggaactgaaaggcccataggtaagctgaagatctacaacaac
agagagcagcatgaggtgtagtgtccttgaaaacacttgtaatcatactt
acctgcaactgttgatacctgtgacttatactctcatcctcctaattcaa
tgtgcaaatatggaattcttggccagatcactcctaatgggaaccagcaa
ggcaatagctgtttgacagaagt
gaattcatttttcattttactccattagagcttgcaaaaggttttcatca
attgtataatgtccccactggaacattgcagcaaaaatttaatattttcc
gggcctcagcccgaactgttgtattgcaatgcccacaattcgtgcacttt
catcaccctccccatgttgggattaaccctcttggattgataccactaaa
aatacggcaaatggatgttacacgtgttccagcctttggaaattttaaat
atgtccatgtttctattgacacctgttcaggtatcatgtatgcctcccct
atgtctggtgaaaaaacctgcaatgttattagccattgcttagacgcatg
ggcagcttggggaaaaccatctaatttaaaaactgataatggacctgcat
atacatcaacatccttccaagtcttctgcgaaactatggaagttagtcat
accacagcccttccctataacccacaaggccaagatattgtggaaagagc
acatagcaccttgaaagaactgttacaaaaacaaaaggagggaattgcct
atggacgagcacccaaagaacaattatctttagctttatttaccttaatt
tttttaattttcttttttttcccaattcttttttttccatttttattagg
tatttagctcatttacatttccaatgctataccaaaagtcccccataccc
acccacccccactccgctaaccacccactccccctttttggccctggcgt
tcccctgtactggggcatacaaagtttgcgtttccaatgggcctctcttt
ccagtgatggcagactaggcaatcttttgatacatatgcagctagagtca
agagctccggggtactggatagttcataatgttgttccacctatagggtt
gcagatccctttagctccttgggttctttctctagctcctccattgggag
ccctgtgatccatccattagctggctgtgagcatccacgtctgttgtttg
ctaggcccgggcatagtctcacaagaagatagttacatcttgggtcttcg
ataaaatctgcctagggtaatgcaatggtatcagtgtttggatgctgatt
atgggggtggaattccttcatatggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7805494_7806665
seq2: B6Ng01-231C13.b_47_1219

seq1  GAATTCTTTTTCCATTCACATTCATAACAATCTCTAGACTGCCTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCCATTCACATTCATAACAATCTCTAGACTGCCTTTCTTT  50

seq1  AAGGAAAAATGTTCAGAAACTTATTATTTTGGAAAACATTTCCTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATGTTCAGAAACTTATTATTTTGGAAAACATTTCCTATTTCT  100

seq1  TTAAGTCTGGGCATCTGAAAGACTCTAAACAGCTATGCAATTGAAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTGGGCATCTGAAAGACTCTAAACAGCTATGCAATTGAAGACAT  150

seq1  CAAACCTTGTCCAATAGAAGAAACTTTACCTTCAAGCAGTGAGAACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTGTCCAATAGAAGAAACTTTACCTTCAAGCAGTGAGAACTGGC  200

seq1  TCCTTTCCCATTGTCTATTGCCTGATTATCAACCTGCTGCAAATTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCATTGTCTATTGCCTGATTATCAACCTGCTGCAAATTCATCT  250

seq1  CATGGAGTGCATGGGCTATGGCATGCACAGCATTGTATATGTTATGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTGCATGGGCTATGGCATGCACAGCATTGTATATGTTATGACTA  300

seq1  CTCTCACTAAAGGCCATGTCAAACTTCTGTTCCATTAGCCAATCAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTAAAGGCCATGTCAAACTTCTGTTCCATTAGCCAATCAAATGA  350

seq1  GGCATCAGATGAATTGTTCTTCAGTATTTTACACTTAGATGCTGAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATGAATTGTTCTTCAGTATTTTACACTTAGATGCTGAGGATT  400

seq1  CATATTTAAAGTATTTCCACTCTGGCATTACTAGATATAAATCTTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAAGTATTTCCACTCTGGCATTACTAGATATAAATCTTTGCTT  450

seq1  CTGAGATGGAACCATGTCTGTACAAAATCTTTAAAGCCAGAAATCCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGGAACCATGTCTGTACAAAATCTTTAAAGCCAGAAATCCCACC  500

seq1  ATGGTGGGGTAGAAAAGTAAGTGATCCATAGATTGTGCCATGAGTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGGTAGAAAAGTAAGTGATCCATAGATTGTGCCATGAGTTATGT  550

seq1  CTCTCTTACTGGTAGGGAAATTCCATTGTTTTGTGGTGATCCATATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTACTGGTAGGGAAATTCCATTGTTTTGTGGTGATCCATATTCTC  600

seq1  TGTAAACCTGGAGGTTCCCACATTCTGAAGATCAAATCAACGAAATCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCTGGAGGTTCCCACATTCTGAAGATCAAATCAACGAAATCGAT  650

seq1  TGTTTCCTCATAAATGATGATAACATTTGAGGATGACATCACAATTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTCATAAATGATGATAACATTTGAGGATGACATCACAATTTGTT  700

seq1  TGTAGTACATTTCAGTTTTGTGTTCAAATGAAATGTCATCAACAGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACATTTCAGTTTTGTGTTCAAATGAAATGTCATCAACAGAGATC  750

seq1  ATTTTCACAAAGGCAAAGCAAATTTCCTTGTTTTCCTTCTGTTTTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAAAGGCAAAGCAAATTTCCTTGTTTTCCTTCTGTTTTTTCAA  800

seq1  CTCTAAAAGAAATTGGTTTCCTTGATCGTCATCTGGGATGACAAGGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAAGAAATTGGTTTCCTTGATCGTCATCTGGGATGACAAGGCCAA  850

seq1  TCCAGTTCCAGTTGAAGTAAAGTATGAAGGAGACCATTGCCAATGCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCCAGTTGAAGTAAAGTATGAAGGAGACCATTGCCAATGCTAGA  900

seq1  GATGTGTCCTTTGGGGCCATCTGATAGAGATAGGGATATTGTTCATCATC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGTGTCCTTTGGGGCCATCTGATAGAGATAGGGATA-TGTTCATCATC  949

seq1  ACTGAAGATGGAACTGAAAGGCCCATAGGTAAGCTGAAGGATCTACAAC-  999
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  ACTGAAGATGGAACTGAAAGGCCCATAGGTAAGCTGAA-GATCTACAACA  998

seq1  ACAGAGAGCAGCATGAGGTGTAGTGTCCTTGAAAACACTTGTAATCATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCAGCATGAGGTGTAGTGTCCTTGAAAACACTTGTAATCATAC  1048

seq1  TTACCTGCAAACTGTTGATTACCTGTGACTTATACTCTCATC--TCTAAT  1097
      |||||||| ||||||||| |||||||||||||||||||||||   |||||
seq2  TTACCTGC-AACTGTTGA-TACCTGTGACTTATACTCTCATCCTCCTAAT  1096

seq1  TCAAATGTGCAAATATGGAATCCT--GGCAGATCCACTTCTAATGGGAA-  1144
      || |||||||||||||||||| ||  | ||||| |||| |||||||||| 
seq2  TC-AATGTGCAAATATGGAATTCTTGGCCAGAT-CACTCCTAATGGGAAC  1144

seq1  CAGCAAG--CATAGCTGTTTGACAAGAAGT  1172
      |||||||   ||||||||||||| ||||||
seq2  CAGCAAGGCAATAGCTGTTTGAC-AGAAGT  1173

seq1: chr7_10131284_10132407
seq2: B6Ng01-231C13.g_68_1195

seq1  GAATTCATTTTTCATTTTACTCCATTAGAGCTTGCAAAAGGTTTTCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCATTTTACTCCATTAGAGCTTGCAAAAGGTTTTCATCA  50

seq1  ATTGTATAATGTCCCCACTGGAACATTGCAGCAAAAATTTAATATTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAATGTCCCCACTGGAACATTGCAGCAAAAATTTAATATTTTCC  100

seq1  GGGCCTCAGCCCGAACTGTTGTATTGCAATGCCCACAATTCGTGCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAGCCCGAACTGTTGTATTGCAATGCCCACAATTCGTGCACTTT  150

seq1  CATCACCCTCCCCATGTTGGGATTAACCCTCTTGGATTGATACCACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCTCCCCATGTTGGGATTAACCCTCTTGGATTGATACCACTAAA  200

seq1  AATACGGCAAATGGATGTTACACGTGTTCCAGCCTTTGGAAATTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGCAAATGGATGTTACACGTGTTCCAGCCTTTGGAAATTTTAAAT  250

seq1  ATGTCCATGTTTCTATTGACACCTGTTCAGGTATCATGTATGCCTCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATGTTTCTATTGACACCTGTTCAGGTATCATGTATGCCTCCCCT  300

seq1  ATGTCTGGTGAAAAAACCTGCAATGTTATTAGCCATTGCTTAGACGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGTGAAAAAACCTGCAATGTTATTAGCCATTGCTTAGACGCATG  350

seq1  GGCAGCTTGGGGAAAACCATCTAATTTAAAAACTGATAATGGACCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTGGGGAAAACCATCTAATTTAAAAACTGATAATGGACCTGCAT  400

seq1  ATACATCAACATCCTTCCAAGTCTTCTGCGAAACTATGGAAGTTAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAACATCCTTCCAAGTCTTCTGCGAAACTATGGAAGTTAGTCAT  450

seq1  ACCACAGCCCTTCCCTATAACCCACAAGGCCAAGATATTGTGGAAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCCCTTCCCTATAACCCACAAGGCCAAGATATTGTGGAAAGAGC  500

seq1  ACATAGCACCTTGAAAGAACTGTTACAAAAACAAAAGGAGGGAATTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCACCTTGAAAGAACTGTTACAAAAACAAAAGGAGGGAATTGCCT  550

seq1  ATGGACGAGCACCCAAAGAACAATTATCTTTAGCTTTATTTACCTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGAGCACCCAAAGAACAATTATCTTTAGCTTTATTTACCTTAATT  600

seq1  TTTTTAATTTTCTTTTTTTTCCCAATTCTTTTTTTTCCATTTTTATTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTCTTTTTTTTCCCAATTCTTTTTTTTCCATTTTTATTAGG  650

seq1  TATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCC  700

seq1  ACCCACCCCCACTCCGCTAACCACCCACTCCCCCTTTTTGGCCCTGGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCCACTCCGCTAACCACCCACTCCCCCTTTTTGGCCCTGGCGT  750

seq1  TCCCCTGTACTGGGGCATACAAAGTTTGCGTTTCCAATGGGCCTCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGGGGCATACAAAGTTTGCGTTTCCAATGGGCCTCTCTTT  800

seq1  CCAGTGATGGCAGACTAGGCAATCTTTTGATACATATGCAGCTAGAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGGCAGACTAGGCAATCTTTTGATACATATGCAGCTAGAGTCA  850

seq1  AGAGCTCCGGGGTACTGGATAGTTCATAATGTTGTTCCACCTATAGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCGGGGTACTGGATAGTTCATAATGTTGTTCCACCTATAGGGTT  900

seq1  GCAGATCCCTTTAGCTCCTTGGGTTCTTTCTCTAGCTCCTCCATTGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCCTTTAGCTCCTTGGGTTCTTTCTCTAGCTCCTCCATTGGGAG  950

seq1  CCCTGTGATCCATCCATTAGCTGGCTGTGAGCATCCACGTCTG-TGTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGTGATCCATCCATTAGCTGGCTGTGAGCATCCACGTCTGTTGTTTG  1000

seq1  CTAGGCCCCGGCATAGTCTCACAAG-AGATAGTTACATC-TGGGTCCTTT  1047
      |||||||| |||||||||||||||| ||||||||||||| ||||||  ||
seq2  CTAGGCCCGGGCATAGTCTCACAAGAAGATAGTTACATCTTGGGTC--TT  1048

seq1  CGATAAAATCTTGCTAGGGT-ATGCAATGGTATCAGTGTTTGGATGCTGA  1096
      |||||||||||  ||||||| |||||||||||||||||||||||||||||
seq2  CGATAAAATCTGCCTAGGGTAATGCAATGGTATCAGTGTTTGGATGCTGA  1098

seq1  TTAT-GGGGTGG-ATCCCTGGATATGGCAG  1124
      |||| ||||||| || |||  |||||||||
seq2  TTATGGGGGTGGAATTCCTTCATATGGCAG  1128