BAC Information

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BAC

Clone NameB6Ng01-231L04
Chromosome7 (Build37)
Map Location 49,199,691 - 49,200,559
singlet/doubletsinglet
Overlap geneGprc2a-rs1
Upstream gene4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422
Downstream geneEG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231L04.bB6Ng01-231L04.g
ACCGA044229GA044230
length1,1061,084
definitionB6Ng01-231L04.b B6Ng01-231L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatataatttttggtcaaagggaccccatgagaacccaaacagc
ccaggttactatcaaggttattggttactctatacaatagttgagcacag
cacctcataatgcactgagcacagagaactcaaacctagagcctttacca
ccatttaataattttcacagtactcatagttattcagcagaatgctagag
ggaaatgaaaacacatagatttgaacactgcagtctatgatggtgattgc
ctgcagaatccactggtacagcactggagcaaaatttgtagaataacaag
ccactatcaaattctatttagagtcccacttcatgatatgaaacctgtgc
ctgacaatgcattgttagccaacttacctgagattagataggcaatagac
ttaggaaaaaagtaaatactactgttctataaaagaaacacagcaatgta
atctatttataatgacattcttctatacacatagatatgtatttttctca
gctttcatcatagaactgtctttctatgctagataacaataatagaggca
cacaactgaacaatgatcagagaattacagactgaaacattcagttccaa
aattaggatctctataaagatgcctggctgcagggcttatggaaaacagc
aggaaagcattcaagaagattgtaagaaagagtgatgagggaggacactg
atgaaagaaagccttctctataccccaggatttataattcaggaaatcac
atagagactgggagcatgcaaatgtgtggtacatgtgtaatccagacagg
gtctttgtgcagtaaaggcaagtatgcgcaagccccatcactaccaaaaa
aagctattccaaaatagtaactgctagcaataaaattatattgtttcaat
agatttcagcagagtaatcaaatacaatttaaggtcagcccaaacagcta
atgagtaatacaaaatcaattctctgggatgttggaaggtgttttatgtc
tcaaaatccttttcttcttggcattttttaaaccttataagtctttgatt
atatgtgcagtttctgattttgtttttgtagaatatctaggtagggaagg
tgtggt
gaattcatggaactgaaaaaattttaggacaaaggacacagttatttaga
caaagcacttgatgttgcacttctccattgttggtggaagtgaataattt
atcaatttattactgtggaaagtaataatttatctccttactacattagg
aattgatctaccaaaaatctatctatacagccttttggaaaacaaccaaa
taatcaacccatcctaacataaaaacactagctcaaacatgttcagtgta
tttttgttattcataataaccaggaactagaaataagctacatgccactc
aatggaaaatggataaaaattatggtagagttacagattggagtattatt
caattgtaaaacaatgatatcatgaaatttgtaggaaaatggattgaaca
ataaaaaatacgagtgagataacacatagaaagaaaaacatgctatgtaa
cacttacaagggatattagactctaagtaaacgataacaaatatacaaaa
aattgacccagagacattacgtcattagttctcaatctttctgctgctgt
gatcttttaattcatgttctcatgttgttgttacatccagctattagtta
ctttttgctatttcataactaattttgttattgctatgaagcatagtgta
aatatattttccccaatacctttaactgctacttgttaaagagtatttca
attcttacagattgagaaataatggacaaagtatagaggcattatgaatt
aggaaataatgtacctcttaggtagggtgatagaataattattacaggtg
ggacagaaggtaggtgcaggaaggagtaggagacatcatttgggcatgga
gaagtaatgaagggagaaagtgtcagaagagatggttggaattgggaagg
gcatttaaatctatttagagatgttttgaatctctgaatgtgatcctatt
tgtggacttcctagtaatagaggataaagaaaatctcttgtagccaggtt
tacaaggtggtgggacttgattgcttttcaattaatgtcattgccaagga
aatctatcggaaatacacagtatatgtaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49199691_49200559
seq2: B6Ng01-231L04.g_275_1151

seq1  CCCATCCTAACATAAAAACACTAGCTCAAACATGTTCAGTGTATTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTAACATAAAAACACTAGCTCAAACATGTTCAGTGTATTTTTGT  50

seq1  TATTCATAATAACCAGGAACTAGAAATAAGCTACATGCCACTCAATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAATAACCAGGAACTAGAAATAAGCTACATGCCACTCAATGGAA  100

seq1  AATGGATAAAAATTATGGTAGAGTTACAGATTGGAGTATTATTCAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAAAATTATGGTAGAGTTACAGATTGGAGTATTATTCAATTGT  150

seq1  AAAACAATGATATCATGAAATTTGTAGGAAAATGGATTGAACAATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGATATCATGAAATTTGTAGGAAAATGGATTGAACAATAAAAA  200

seq1  ATACGAGTGAGATAACACATAGAAAGAAAAACATGCTATGTAACACTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAGTGAGATAACACATAGAAAGAAAAACATGCTATGTAACACTTAC  250

seq1  AAGGGATATTAGACTCTAAGTAAACGATAACAAATATACAAAAAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATTAGACTCTAAGTAAACGATAACAAATATACAAAAAATTGAC  300

seq1  CCAGAGACATTACGTCATTAGTTCTCAATCTTTCTGCTGCTGTGATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACATTACGTCATTAGTTCTCAATCTTTCTGCTGCTGTGATCTTT  350

seq1  TAATTCATGTTCTCATGTTGTTGTTACATCCAGCTATTAGTTACTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATGTTCTCATGTTGTTGTTACATCCAGCTATTAGTTACTTTTTG  400

seq1  CTATTTCATAACTAATTTTGTTATTGCTATGAAGCATAGTGTAAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATAACTAATTTTGTTATTGCTATGAAGCATAGTGTAAATATAT  450

seq1  TTTCCCCAATACCTTTAACTGCTACTTGTTAAAGAGTATTTCAATTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAATACCTTTAACTGCTACTTGTTAAAGAGTATTTCAATTCTTA  500

seq1  CAGATTGAGAAATAATGGACAAAGTATAGAGGCATTATGAATTAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAGAAATAATGGACAAAGTATAGAGGCATTATGAATTAGGAAAT  550

seq1  AATGTACCTCTTAGGTAGGGTGATAGAATAATTATTACAGGT-GGACAGA  599
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGTACCTCTTAGGTAGGGTGATAGAATAATTATTACAGGTGGGACAGA  600

seq1  AGGTAGGTGCAGGAAGGAGTAGGAGACATCATTTGGGCATGGAGAAGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTGCAGGAAGGAGTAGGAGACATCATTTGGGCATGGAGAAGTAA  650

seq1  TGAAGGGAGAAAGTGTCAGAAGAGATGGTTGGAATTGGGAAGGGCATTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAGAAAGTGTCAGAAGAGATGGTTGGAATTGGGAAGGGCATTTA  700

seq1  AATCTATTTAGAGATGTTTTGAATCTCTGAATGTGATCCTA-TTGTGGAC  748
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCTATTTAGAGATGTTTTGAATCTCTGAATGTGATCCTATTTGTGGAC  750

seq1  -TCCTAGTAATAGAGGATAA--GAAATCTCTTGTAGCCAGG-TTACAA-G  793
       |||||||||||||||||||   |||||||||||||||||| |||||| |
seq2  TTCCTAGTAATAGAGGATAAAGAAAATCTCTTGTAGCCAGGTTTACAAGG  800

seq1  TGGTGGGACTTGATTG-TTTTCAATTAAGTTTATTGCCAAGGAAATCTTA  842
      |||||||||||||||| |||||||||||  | ||||||||||||||||  
seq2  TGGTGGGACTTGATTGCTTTTCAATTAATGTCATTGCCAAGGAAATCTAT  850

seq1  TGGAAATCACCAAATA-ATGTAGGCTGA  869
       |||||| ||  | || |||||||||||
seq2  CGGAAAT-ACACAGTATATGTAGGCTGA  877