BAC Information

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BAC

Clone NameB6Ng01-231M11
Chromosome7 (Build37)
Map Location 96,296,691 - 96,407,661
singlet/doubletdoublet
Overlap geneTmem135
Upstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneLOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231M11.bB6Ng01-231M11.g
ACCGA044283GA044284
length9851,141
definitionB6Ng01-231M11.b B6Ng01-231M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,296,691 - 96,297,206)(96,406,509 - 96,407,661)
sequence
gaattcacatttttctcttttttttcattttttattaggtatttagctca
tttacatttccaatgctataccaaaagtcccccatacccacccccccaat
cccctacccacccactccccctttttggccctggcgttcccctgtactgg
ggcatataaagtttgcaagtccaatgggcctctctttgcagtgatggccg
actaggccatcttttgatacatatgcagctagagacaagagctccggggt
actgcttagttcatattgttgtgccacctatagggttgcagttcccttta
gttccttgggtgctttctctagttcctccattgggggccctgtggtccat
tcaatagctgactgtgagcatccacttctgtgtttgctaggccctggcat
agtctcacaagagacagctacatctgggtcctttcgataaaatcttgcta
gtgtatgcaatggtgtcagcatttggaagctgatcatgggatggatctct
ggatatggcaatcactagaaggtccatcctttcgtcacacttccaaattc
tgtctctgtaactgattccatgggtgttttgtttcctattctaagaaggg
gcaaagtgtccacactttggtcttcgttctcttgaatttaatgtgtttag
caaattgtatcttatatcttgggtatcctaagtttctgggctaatatcca
cttatcagtgagtacatattgtgagagttcctttgtgattgggttacctc
actcaggatgatgccctccaggtccatccatttgcctaggaatttcataa
attcattctttttaatagctgagtagtactccattgtgttaatgtaccac
attttctgtatccattcctctgttgagggtcatctggattctttccagct
tctgactattataaataaggctgctatgaacatagtggagcatgtgtcct
tcttacccggttggggcatcttctggatgtatgcc
gaattcatgtgggtgattgttggccgttacagctttattatgtttaaaat
aagaaaacagtgacattgaaacctcccttctctattacatgtggcttcaa
tttgcattttaatcagagtatggaagtcattactctgacatctgaaactt
tggtagccgtaaaagttatcactcacaggacagcagacatagtttatttt
gtgtttattactgggtggccctcttgaaactttcctgaacctaattgaat
ccagatattagaaaattaaattaattatttaaatactattaaatcatgac
atttattttggatgtatttagttgaattgtgttaactggtttgatacatg
tgaatgtttaagattacaaagacttccggcatgtatgctcagacatctac
ttggttgtatttccagaagatttcaagtggatattttctgcctaatttgt
acacaataaaagaaatcattagttttattctttccattatacatagttcc
ttcataactcttgactgatgtcatataaatttatttcttaaacccatcag
actattattgataatttctttgtgttttactatgctttctgtaaatcttg
ctctatttcaaaactttaagccatttctcatgataaaagtctctagttcc
ttgttgtctgttcacttacttttttttggtcagcactacttgggcatata
tttccttggtatccagcaagtctaagaagctgatcattcctgccctagat
atttgagctcaggcctaggaaaggacagcctttgtttttagattgagatg
gttggttttgcttgtgatgtaggtcatgtgatctctatgtcaatgtcagc
tttggcagcataggacagaacacccctagaatatatataaatgaacgaac
atggatgcattccaataaaactttgtttacggacactgaaacttgaaatt
ttataattttcacatgtcaagagaaatagcatcctttgtttttgattttt
agaagtattttgtgttatcgtccagggctgtcatagcaaatacacacaca
taatgctcattagaagaggatttattttttctggtttggagctggagcta
actctgtgtgtgttgcagaaccttgcgtcctgagtctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_96296691_96297206
seq2: B6Ng01-231M11.b_45_560

seq1  GAATTCACATTTTTCTCTTTTTTTTCATTTTTTATTAGGTATTTAGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTTCTCTTTTTTTTCATTTTTTATTAGGTATTTAGCTCA  50

seq1  TTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCCCCCAAT  100

seq1  CCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGG  150

seq1  GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCG  200

seq1  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGT  250

seq1  ACTGCTTAGTTCATATTGTTGTGCCACCTATAGGGTTGCAGTTCCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAGTTCATATTGTTGTGCCACCTATAGGGTTGCAGTTCCCTTTA  300

seq1  GTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCCTGTGGTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCCTGTGGTCCAT  350

seq1  TCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCAT  400

seq1  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTA  450

seq1  GTGTATGCAATGGTGTCAGCATTTGGAAGCTGATCATGGGATGGATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCAATGGTGTCAGCATTTGGAAGCTGATCATGGGATGGATCTCT  500

seq1  GGATATGGCAATCACT  516
      ||||||||||||||||
seq2  GGATATGGCAATCACT  516

seq1: chr7_96406509_96407661
seq2: B6Ng01-231M11.g_65_1205 (reverse)

seq1  ACTGAGACCTCAGAGACAGCAAGGTCCTGCAACACACAGAG-TTTAGCTT  49
      ||||||| ||||| ||| ||||||| |||||||||||| ||  ||||| |
seq2  ACTGAGA-CTCAG-GAC-GCAAGGTTCTGCAACACACACAGAGTTAGC-T  46

seq1  CCAGCCTCCAAAACCAAGAAAAAATAAATTCCTCTTCTAATGAGCCATTT  99
      |||| |||||||  | |||||||||||| ||||||||||||||| |||| 
seq2  CCAG-CTCCAAA--CCAGAAAAAATAAA-TCCTCTTCTAATGAG-CATT-  90

seq1  AATGTGTGTGGTTATTTGCTATGACAGCCCTGGACGATAACAC-AAATAC  148
       |||||||||  ||||||||||||||||||||||||||||||| ||||||
seq2  -ATGTGTGTG--TATTTGCTATGACAGCCCTGGACGATAACACAAAATAC  137

seq1  TTCTAAAAATCAAAAACAAAAGGATGCTATTTCTCTTGACATGTGAAAAT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTAAAAATCAAAAAC-AAAGGATGCTATTTCTCTTGACATGTGAAAAT  186

seq1  TATAAAATTTCAAGTTTCAGTGTCCGTAAACAAAGTTTTATTGGAATGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTTCAAGTTTCAGTGTCCGTAAACAAAGTTTTATTGGAATGCA  236

seq1  TCCATGTTCGTTCATTTATATATATTCTAGGGGTGTTCTGTCCTATGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTCGTTCATTTATATATATTCTAGGGGTGTTCTGTCCTATGCTG  286

seq1  CCAAAGCTGACATTGACATAGAGATCACATGACCTACATCACAAGCAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGACATTGACATAGAGATCACATGACCTACATCACAAGCAAAA  336

seq1  CCAACCATCTCAATCTAAAAACAAAGGCTGTCCTTTCCTAGGCCTGAGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATCTCAATCTAAAAACAAAGGCTGTCCTTTCCTAGGCCTGAGCT  386

seq1  CAAATATCTAGGGCAGGAATGATCAGCTTCTTAGACTTGCTGGATACCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTAGGGCAGGAATGATCAGCTTCTTAGACTTGCTGGATACCAA  436

seq1  GGAAATATATGCCCAAGTAGTGCTGACCAAAAAAAAGTAAGTGAACAGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATATGCCCAAGTAGTGCTGACCAAAAAAAAGTAAGTGAACAGAC  486

seq1  AACAAGGAACTAGAGACTTTTATCATGAGAAATGGCTTAAAGTTTTGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAACTAGAGACTTTTATCATGAGAAATGGCTTAAAGTTTTGAAA  536

seq1  TAGAGCAAGATTTACAGAAAGCATAGTAAAACACAAAGAAATTATCAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAGATTTACAGAAAGCATAGTAAAACACAAAGAAATTATCAATA  586

seq1  ATAGTCTGATGGGTTTAAGAAATAAATTTATATGACATCAGTCAAGAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGATGGGTTTAAGAAATAAATTTATATGACATCAGTCAAGAGTT  636

seq1  ATGAAGGAACTATGTATAATGGAAAGAATAAAACTAATGATTTCTTTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAACTATGTATAATGGAAAGAATAAAACTAATGATTTCTTTTAT  686

seq1  TGTGTACAAATTAGGCAGAAAATATCCACTTGAAATCTTCTGGAAATACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAAATTAGGCAGAAAATATCCACTTGAAATCTTCTGGAAATACA  736

seq1  ACCAAGTAGATGTCTGAGCATACATGCCGGAAGTCTTTGTAATCTTAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGATGTCTGAGCATACATGCCGGAAGTCTTTGTAATCTTAAAC  786

seq1  ATTCACATGTATCAAACCAGTTAACACAATTCAACTAAATACATCCAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGTATCAAACCAGTTAACACAATTCAACTAAATACATCCAAAA  836

seq1  TAAATGTCATGATTTAATAGTATTTAAATAATTAATTTAATTTTCTAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCATGATTTAATAGTATTTAAATAATTAATTTAATTTTCTAATA  886

seq1  TCTGGATTCAATTAGGTTCAGGAAAGTTTCAAGAGGGCCACCCAGTAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTCAATTAGGTTCAGGAAAGTTTCAAGAGGGCCACCCAGTAATA  936

seq1  AACACAAAATAAACTATGTCTGCTGTCCTGTGAGTGATAACTTTTACGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAATAAACTATGTCTGCTGTCCTGTGAGTGATAACTTTTACGGC  986

seq1  TACCAAAGTTTCAGATGTCAGAGTAATGACTTCCATACTCTGATTAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTTTCAGATGTCAGAGTAATGACTTCCATACTCTGATTAAAAT  1036

seq1  GCAAATTGAAGCCACATGTAATAGAGAAGGGAGGTTTCAATGTCACTGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGAAGCCACATGTAATAGAGAAGGGAGGTTTCAATGTCACTGTT  1086

seq1  TTCTTATTTTAAACATAATAAAGCTGTAACGGCCAACAATCACCCACATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTAAACATAATAAAGCTGTAACGGCCAACAATCACCCACATG  1136

seq1  AATTC  1153
      |||||
seq2  AATTC  1141