BAC Information

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BAC

Clone NameB6Ng01-233B13
Chromosome7 (Build37)
Map Location 123,573,188 - 123,574,375
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a
Downstream geneLOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233B13.bB6Ng01-233B13.g
ACCGA045253GA045254
length1,1821,168
definitionB6Ng01-233B13.b B6Ng01-233B13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaggtaggagcatggatagttattactcaatgggcagtctca
ttttgcagtagttaagttttttgaaatagacagtggtatagataacataa
taactgatgccactaaattataaatgagcaaatgttcatctctgtgtgtg
tatgtgtgagaggagagagagacagagagacagagaactgagggtatagc
tcaatggcaaagttcttatctaatagatacaagaccctgggttgaagtca
tgtacccactggagtccagagttgcatgcttttaatcctagctctcagga
ggctaaggcaggaggatcaagagttcaaagccagcttgatctacaaaact
agactgtaacgcaaaacaaaaacaaaaaacccaaaacaatctttttgaag
tgatgaaaatattgtctgtctcttccttccgccctccctcctctttttgc
tgacagcatccttgtagagctcaggttgccccagactcactacactaagg
agcaaaggataaccatcaactcctgatcttcttgcctctcgtctaacact
atgacctcaggtgtaggccatcaagcttgatcacagaactccataaattc
taggcaatcactctagcaatggagccacatccccagtcccacattctttg
tcctaactgctgttgtgccagttctgtgactgctattttccataatcaaa
agaagtgttcagtttggatgcccagatgtctagataaatagatttatgga
tttttatatgtaaaacatcttcagaaactatgtggggcaaaaagagcaac
tgcagttagtggggcatatgtagtggttcacaccctgtaatccttgcact
tacaaagctggaagcaggatgccataaatttaaggccaacctaagctaca
gagagagagtgcgcaactaaaaaaacaaaacaaacaaacaaaaaaaacct
caagcactgtcataccaagcattttagctcagcacgcacaaatctagtct
gaaaactccatgacagaatactcatctaacatgtaaaagaggaagggagg
agtcttattctgacaaagagggccatttcaagaacagatatgggaataca
cacattgtaattcagcatggcgagacttacgccagaggaattggaagggt
tcagtgccaggaatctgtctcccaattccctc
gaattctctggtggaagctttggaggctaaaaagctaaagcttacagtca
gcaggttaagctttttctgaggcttcccaacctcctaggcagatggctcc
ctcttcactatgttctcccatggcctttctctgtacttgctctttctgga
atctcatgtaggccctaagcccctcttcttataagcacatgagccagatt
gggtgaggaatccctaacagtgttatcctaatcacagtcttcaaggcctt
gtttccaaagacagatacctggggaaagggcttcagcatgtgaacttgga
ggatgctccagcactctgtccacagccaacaagctaagtctggcttgatc
tgtccttttctctgaaagggcccagagtaaccagagccaggaagacagac
ttagtctgcccaaatgcacaatctagggctacagagatggtggcagttgt
ctgggagtgcagaaggtacttctatgggagatttagcttcagttcggtag
gctaagaccttttccacagtctccgtgtggtggtagatggaaagagatat
ttcatggttctaaattgtttattgactgttcatggtgggaaatggatgca
tacctccttcttaaggtctgactcaatattaaataccttttgcagggagg
aaagtctaggaagggaagcttattggctaagcacttggtgcctctaggtc
cctcattatcatggagaactctgttctgggctgaggtgaccacaggtcag
tttcctgatgtggggagtgtggcatgtgttccaggctgacagggagcggg
gagttgccaaagtctcagtgtgcccacagagtctctgagtctcaaactgc
tctacccaccaagattcctggcatggttctaccatcccacaactggacca
ggaggaaagccaggagaagttcttggctatgcctctcccaaggagatgca
agacccataagcagtgtacagctagctgtaccagcaagccaagctctgtt
ctctgtcactgtcatcagtcctatttatgccttgaacatcactcctcctc
catgggtctggctcagcacagcatgcctgaacatccactctggccaacca
gccagtctggagatggcagactgtagcaatccacagaaggttttttgaga
tcatcccttcctaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123573188_123574375
seq2: B6Ng01-233B13.b_44_1225

seq1  GAATTCAGGAGGTAGGAGCATGGATAGTTATTACTCAATGGGCAGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGTAGGAGCATGGATAGTTATTACTCAATGGGCAGTCTCA  50

seq1  TTTTGCAGTAGTTAAGTTTTTTGAAATAGACAGTGGTATAGATAACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTAGTTAAGTTTTTTGAAATAGACAGTGGTATAGATAACATAA  100

seq1  TAACTGATGCCACTAAATTATAAATGAGCAAATGTTCATCTCTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATGCCACTAAATTATAAATGAGCAAATGTTCATCTCTGTGTGTG  150

seq1  TATGTGTGAGAGGAGAGAGAGACAGAGAGACAGAGAACTGAGGGTATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGAGAGGAGAGAGAGACAGAGAGACAGAGAACTGAGGGTATAGC  200

seq1  TCAATGGCAAAGTTCTTATCTAATAGATACAAGACCCTGGGTTGAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCAAAGTTCTTATCTAATAGATACAAGACCCTGGGTTGAAGTCA  250

seq1  TGTACCCACTGGAGTCCAGAGTTGCATGCTTTTAATCCTAGCTCTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCACTGGAGTCCAGAGTTGCATGCTTTTAATCCTAGCTCTCAGGA  300

seq1  GGCTAAGGCAGGAGGATCAAGAGTTCAAAGCCAGCTTGATCTACAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGCAGGAGGATCAAGAGTTCAAAGCCAGCTTGATCTACAAAACT  350

seq1  AGACTGTAACGCAAAACAAAAACAAAAAACCCAAAACAATCTTTTTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAACGCAAAACAAAAACAAAAAACCCAAAACAATCTTTTTGAAG  400

seq1  TGATGAAAATATTGTCTGTCTCTTCCTTCCGCCCTCCCTCCTCTTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAATATTGTCTGTCTCTTCCTTCCGCCCTCCCTCCTCTTTTTGC  450

seq1  TGACAGCATCCTTGTAGAGCTCAGGTTGCCCCAGACTCACTACACTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCATCCTTGTAGAGCTCAGGTTGCCCCAGACTCACTACACTAAGG  500

seq1  AGCAAAGGATAACCATCAACTCCTGATCTTCTTGCCTCTCGTCTAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGATAACCATCAACTCCTGATCTTCTTGCCTCTCGTCTAACACT  550

seq1  ATGACCTCAGGTGTAGGCCATCAAGCTTGATCACAGAACTCCATAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCAGGTGTAGGCCATCAAGCTTGATCACAGAACTCCATAAATTC  600

seq1  TAGGCAATCACTCTAGCAATGGAGCCACATCCCCAGTCCCACATTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATCACTCTAGCAATGGAGCCACATCCCCAGTCCCACATTCTTTG  650

seq1  TCCTAACTGCTGTTGTGCCAGTTCTGTGACTGCTATTTTCCATAATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTGCTGTTGTGCCAGTTCTGTGACTGCTATTTTCCATAATCAAA  700

seq1  AGAAGTGTTCAGTTTGGATGCCCAGATGTCTAGATAAATAGATTTATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTCAGTTTGGATGCCCAGATGTCTAGATAAATAGATTTATGGA  750

seq1  TTTTTATATGTAAAACATCTTCAGAAACTATGTGGGGCAAAAAGAGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGTAAAACATCTTCAGAAACTATGTGGGGCAAAAAGAGCAAC  800

seq1  TGCAGTTAGTGGGGCATATGTAGTGGTTCACACCCTGTAATCCTTGCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAGTGGGGCATATGTAGTGGTTCACACCCTGTAATCCTTGCACT  850

seq1  TACAAAGCTGGAAGCAGGGATGCCATAAATTTAAGGCCAACCTAAGCTAC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACAAAGCTGGAAGCA-GGATGCCATAAATTTAAGGCCAACCTAAGCTAC  899

seq1  AGAGAGAGAGTGCGCAACTAAAAAAACAAAACAAACAAACAAAAAAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGTGCGCAACTAAAAAAACAAAACAAACAAACAAAAAAAACC  949

seq1  TCAAGCACTGTCATACCAAGCATTTTAGCTCAGCACGCACAAAATCTAGT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAAGCACTGTCATACCAAGCATTTTAGCTCAGCACGCAC-AAATCTAGT  998

seq1  CTGAAAACTCCATGACAGAATACTCATCTAACATGTAAAAGGAGGAAGGG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGAAAACTCCATGACAGAATACTCATCTAACATGTAAAA-GAGGAAGGG  1047

seq1  AGGAGGTCTATTCTGACAAAAGAGGGCCATTCCAAG-ACAGATATGGG-A  1098
      |||||   ||||||||| ||||||||||||| |||| ||||||||||| |
seq2  AGGAGTCTTATTCTGAC-AAAGAGGGCCATTTCAAGAACAGATATGGGAA  1096

seq1  TACACACA-TGTAATTTCAGCATGCCGAGAC-TAAGGCAGAAGGATTGGA  1146
      |||||||| ||||| ||||||||| |||||| || | |||| | ||||||
seq2  TACACACATTGTAA-TTCAGCATGGCGAGACTTACGCCAGAGGAATTGGA  1145

seq1  GGGTGTTCAAGTTGCCAGTGAAAATCTGTCTCCCAA-TCCCTC  1188
       || |||||   ||||||    |||||||||||||| ||||||
seq2  AGG-GTTCA--GTGCCAG---GAATCTGTCTCCCAATTCCCTC  1182